FFCP PHASE1:Hg19::chr3:65888333..65888352,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:65888333..65888352,- | |||
|description=CAGE_peak_at_chr3:65888333..65888352,- | |||
|id=chr3:65888333..65888352,- | |||
|ontology_enrichment_celltype=CL:0002076!2.20e-09!43;CL:0000622!5.00e-09!5;CL:0002251!2.43e-08!21;CL:0000154!2.09e-07!6;CL:0002159!4.56e-07!13;CL:0000150!9.01e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000622;3.76e-13;5!CL:0000150;6.93e-13;9!CL:0000154;4.74e-11;6!CL:0002623;2.87e-10;3!CL:0000167;6.03e-09;1!CL:0000164;6.03e-09;1!CL:0000502;6.03e-09;1!CL:0000172;6.03e-09;1!CL:0000173;6.03e-09;1!CL:0002336;2.55e-08;1!CL:0002261;2.55e-08;1!CL:0002170;2.55e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,4.18e-13,5;CL:0000150,7.50e-13,9;CL:0000154,5.18e-11,6;CL:0002623,2.74e-10,3;CL:0000167,6.03e-09,1;CL:0000164,6.03e-09,1;CL:0000502,6.03e-09,1;CL:0000172,6.03e-09,1;CL:0000173,6.03e-09,1;CL:0002351,6.03e-09,1;CL:0002336,3.06e-08,1;CL:0002261,3.06e-08,1;CL:0002170,3.06e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0007297;4.78e-16;2!CL:0002351;6.03e-09;1!UBERON:0005754;7.55e-09;1!UBERON:0009143;2.55e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4430;6.03e-09;1!DOID:3371;1.14e-08;1!DOID:4549;1.14e-08;1!DOID:5861;1.14e-08;1!DOID:6496;1.14e-08;1!DOID:3151;2.55e-08;1!DOID:3149;2.55e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,6.03e-09,1;DOID:3371,1.48e-08,1;DOID:4549,1.48e-08,1;DOID:5861,1.48e-08,1;DOID:6496,1.48e-08,1;DOID:3151,2.46e-08,1;DOID:3149,2.46e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.93e-25!115;UBERON:0000153!2.43e-19!129;UBERON:0007811!2.43e-19!129;UBERON:0000033!1.23e-17!123;UBERON:0000924!2.18e-15!173;UBERON:0006601!2.18e-15!173;UBERON:0004121!3.22e-15!169;UBERON:0000166!1.86e-14!21;UBERON:0001049!2.32e-14!57;UBERON:0005068!2.32e-14!57;UBERON:0006241!2.32e-14!57;UBERON:0007135!2.32e-14!57;UBERON:0000161!3.84e-12!35;UBERON:0002020!1.02e-11!34;UBERON:0003528!1.02e-11!34;UBERON:0002616!1.87e-11!59;UBERON:0001869!1.92e-11!32;UBERON:0000165!2.13e-11!28;UBERON:0000930!2.13e-11!28;UBERON:0002619!2.33e-11!22;UBERON:0001950!6.99e-11!20;UBERON:0001893!1.69e-10!34;UBERON:0002780!1.80e-10!41;UBERON:0001890!1.80e-10!41;UBERON:0006240!1.80e-10!41;UBERON:0003080!4.28e-10!42;UBERON:0001017!9.65e-10!82;UBERON:0002791!1.16e-09!33;UBERON:0005743!1.33e-09!86;UBERON:0000956!1.37e-09!25;UBERON:0000203!1.37e-09!25;UBERON:0000955!2.04e-09!69;UBERON:0006238!2.04e-09!69;UBERON:0002346!3.57e-09!90;UBERON:0003075!4.51e-09!86;UBERON:0007284!4.51e-09!86;UBERON:0001004!3.07e-08!72;UBERON:0000475!4.63e-08!365;UBERON:0003408!4.80e-08!10;UBERON:0000062!6.12e-08!511;UBERON:0000073!6.12e-08!94;UBERON:0001016!6.12e-08!94;UBERON:0000922!9.21e-08!612;UBERON:0003729!9.97e-08!5;UBERON:0004111!1.40e-07!241;UBERON:0001044!1.54e-07!6;UBERON:0003293!1.54e-07!6;UBERON:0003294!1.54e-07!6;UBERON:0010047!1.54e-07!6;UBERON:0000167!1.54e-07!6;UBERON:0000481!4.68e-07!347;UBERON:0000974!4.68e-07!10;UBERON:0003056!8.06e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.31e-22;3!UBERON:0004054;1.31e-22;3!UBERON:0005904;4.13e-17;4!UBERON:0000007;1.86e-15;2!UBERON:0000165;1.43e-11;28!UBERON:0001044;4.74e-11;6!UBERON:0003293;4.74e-11;6!UBERON:0003294;4.74e-11;6!UBERON:0010047;4.74e-11;6!UBERON:0003408;4.74e-11;6!UBERON:0000167;4.74e-11;6!UBERON:0000161;4.03e-09;19!UBERON:0000166;4.03e-09;19!UBERON:0001301;6.50e-09;1!UBERON:0007029;7.55e-09;1!UBERON:0000998;7.55e-09;1!UBERON:0006868;7.55e-09;1!UBERON:0002372;1.14e-08;1!UBERON:0001961;1.14e-08;1!UBERON:0001744;1.14e-08;1!UBERON:0001042;1.14e-08;1!UBERON:0001735;1.14e-08;1!UBERON:0001000;2.55e-08;1!UBERON:0005352;2.55e-08;1!UBERON:0001041;3.58e-08;14!UBERON:0000014;3.60e-08;4!UBERON:0003296;3.60e-08;4!UBERON:0010133;3.60e-08;4!UBERON:0000153;1.28e-07;54!UBERON:0000058;3.89e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,8.13e-23,3;UBERON:0004054,8.13e-23,3;UBERON:0005904,2.90e-17,4;UBERON:0000007,1.45e-15,2;UBERON:0003408,1.31e-11,10;UBERON:0000165,3.78e-11,29;UBERON:0000930,3.78e-11,29;UBERON:0000166,3.84e-11,22;UBERON:0001044,4.06e-11,6;UBERON:0003293,4.06e-11,6;UBERON:0003294,4.06e-11,6;UBERON:0010047,4.06e-11,6;UBERON:0000167,4.06e-11,6;UBERON:0001301,6.50e-09,1;UBERON:0007029,7.01e-09,1;UBERON:0000998,7.56e-09,1;UBERON:0006868,7.56e-09,1;UBERON:0000161,7.75e-09,36;UBERON:0002372,9.46e-09,1;UBERON:0001961,9.46e-09,1;UBERON:0001744,9.46e-09,1;UBERON:0001735,9.46e-09,1;UBERON:0001000,1.59e-08,1;UBERON:0005352,1.59e-08,1;UBERON:0002530,2.07e-08,59;UBERON:0003296,3.18e-08,4;UBERON:0010133,3.18e-08,4;UBERON:0000014,3.41e-08,4;UBERON:0001004,5.84e-08,74;UBERON:0000153,7.47e-08,62;UBERON:0007811,7.47e-08,62;UBERON:0001042,3.54e-07,10;UBERON:0009145,3.54e-07,10;UBERON:0000974,7.48e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0.272746120590835,0.573609190778008,0,0.132529768321485,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0.301586917234893,1.20364978706088,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.839910640994298,0.992425680696705,0.447792613514241,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0,0,0,0.495854746082934,0,2.16941611240793,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.563391205064483,0,0,0,0,0,0,0,0,0,0,1.08890984861323,0.0941438007767792,0.43050537267123,0,0,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.986434056369336,0,0,0,0.463840490809256,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0,0,2.50962739701486,0.307801034015188,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,1.97292201424695,0,0.91821828489147,0.126373159256976,0.150323419414493,0.311064574191741,0,0,0,0,0.569219092059585,0,0.173559738335131,0,0,4.54289337429278,0,0,0,0,1.35784623083787,2.02989091390451,0.225980740780532,0,0,0.253243183823515,0,0,0.640358984218058,0,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.817220436669454,0,0.412618309791701,0,0.674921674654501,2.32140586367385,0.607495566580247,1.34173875039706,0.551639951094387,0.944182586429966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.39669780522807,0,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0.488105059607853,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0.385375350578757,0,0.478901577171454,0,0.504143392443436,0,0.484426936895553,0,0.294443155503077,0.353909170043221,1.10057159113007,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,0,0.405225507710368,0,0.413373593002368,0.253663240775627,0.546974809018219,0,0,1.93458368795583,0.255524855279191,0,0,1.82089681270989,3.41493287026946,0.532214220975833,0,0,0.135939465953663,0.526182188502793,0,0,1.33438257845874,0,0,0,0,0,0.0714765441766563,0,0.348724276104376,0,0,1.24329698497822,0.6828739083758,1.38251932362818,1.72090943528111,0,0,3.81048345171836,0,0,0,0,0,0.731507549893617,0,0,0,3.88568794447312,0,0.198950775161368,0,0,0,2.11347980993343,0,0.655678681511872,7.99539403814589,0.245148321753905,6.83461986594715,0.196308467114945,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0.611923411718232,0,0.5290268405154,0,0,0,0.126166424835079,0,0.886889507080059,0.305966489225945,0,0,0,0.0757786982182394,0,0,0,1.0661699095049,0,0.581300188524055,2.60713800042603,0,0.12729431655633,0.606351566874658,0.653150243690884,2.39563310759697,2.55937801455433,0.573777643141411,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0.201273793591026,0 | |||
|short_description=p@chr3:65888333..65888352,- | |||
}} |
Latest revision as of 23:14, 29 July 2015
Short description: | p@chr3:65888333..65888352, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:65888333..65888352, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 4.18e-13 | 5 |
glandular epithelial cell | 7.50e-13 | 9 |
protein secreting cell | 5.18e-11 | 6 |
acinar cell of salivary gland | 2.74e-10 | 3 |
peptide hormone secreting cell | 6.03e-09 | 1 |
enteroendocrine cell | 6.03e-09 | 1 |
type D enteroendocrine cell | 6.03e-09 | 1 |
somatostatin secreting cell | 6.03e-09 | 1 |
pancreatic D cell | 6.03e-09 | 1 |
progenitor cell of endocrine pancreas | 6.03e-09 | 1 |
buccal mucosa cell | 3.06e-08 | 1 |
endothelial cell of viscerocranial mucosa | 3.06e-08 | 1 |
keratinized cell of the oral mucosa | 3.06e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 8.13e-23 | 3 |
internal male genitalia | 8.13e-23 | 3 |
duct of male reproductive system | 2.90e-17 | 4 |
pituitary gland | 1.45e-15 | 2 |
gland of gut | 1.31e-11 | 10 |
mouth | 3.78e-11 | 29 |
stomodeum | 3.78e-11 | 29 |
oral opening | 3.84e-11 | 22 |
saliva-secreting gland | 4.06e-11 | 6 |
gland of oral region | 4.06e-11 | 6 |
gland of foregut | 4.06e-11 | 6 |
oral gland | 4.06e-11 | 6 |
oral cavity | 4.06e-11 | 6 |
epididymis | 6.50e-09 | 1 |
surface | 7.01e-09 | 1 |
seminal vesicle | 7.56e-09 | 1 |
seminal fluid secreting gland | 7.56e-09 | 1 |
orifice | 7.75e-09 | 36 |
tonsil | 9.46e-09 | 1 |
mucosa-associated lymphoid tissue | 9.46e-09 | 1 |
lymphoid tissue | 9.46e-09 | 1 |
tonsillar ring | 9.46e-09 | 1 |
vas deferens | 1.59e-08 | 1 |
spermatic cord | 1.59e-08 | 1 |
gland | 2.07e-08 | 59 |
gland of diencephalon | 3.18e-08 | 4 |
neuroendocrine gland | 3.18e-08 | 4 |
zone of skin | 3.41e-08 | 4 |
respiratory system | 5.84e-08 | 74 |
anterior region of body | 7.47e-08 | 62 |
craniocervical region | 7.47e-08 | 62 |
chordate pharynx | 3.54e-07 | 10 |
pharyngeal region of foregut | 3.54e-07 | 10 |
neck | 7.48e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 6.03e-09 | 1 |
chondrosarcoma | 1.48e-08 | 1 |
extraosseous chondrosarcoma | 1.48e-08 | 1 |
myxoid chondrosarcoma | 1.48e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 1.48e-08 | 1 |
skin squamous cell carcinoma | 2.46e-08 | 1 |
keratoacanthoma | 2.46e-08 | 1 |