FFCP PHASE1:Hg19::chrX:150151752..150151762,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:150151752..150151762,+
|short_description=p4@HMGB3
|description=CAGE_peak_4_at_HMGB3_5end
|association_with_transcript=0bp_to_ENST00000325307,NM_005342,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3149 | |EntrezGene=3149 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5004 | |HGNC=5004 | ||
|TSSclassifier=strong | |||
|UniProt=O15347,Q7Z684 | |UniProt=O15347,Q7Z684 | ||
|association_with_transcript=0bp_to_ENST00000325307,NM_005342,uc004fep.2,uc004feq.2_5end | |||
|cluster_id=chrX:150151752..150151762,+ | |||
|description=CAGE_peak_4_at_HMGB3_5end | |||
|id=chrX:150151752..150151762,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.58e-09!254 | |||
|ontology_enrichment_celltype_v019=CL:0002541;4.20e-27;3!CL:0002621;1.41e-12;3!CL:0000511;4.62e-10;1!CL:0002625;4.62e-10;1!CL:0000228;4.62e-10;1!CL:0002553;4.62e-10;1!CL:0002581;4.62e-10;1!CL:0000216;4.62e-10;1!CL:0002372;4.62e-10;1!CL:0002322;6.75e-08;5!CL:0000349;1.29e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.26e-27,3;CL:0002621,1.89e-12,3;CL:0000511,2.16e-10,1;CL:0002625,2.16e-10,1;CL:0000216,2.16e-10,1;CL:0002553,2.37e-10,1;CL:0002581,3.40e-10,1;CL:0000228,3.71e-10,1;CL:0002372,3.71e-10,1;CL:0002322,7.01e-08,5;CL:0000349,1.11e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.58e-09!235;DOID:14566!1.74e-08!239;DOID:305!8.87e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:3347;4.62e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,4.44e-10,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.20e-27;3!UBERON:0000920;4.20e-27;3!UBERON:0001949;1.41e-12;3!UBERON:0001136;4.62e-10;1!UBERON:0001343;4.62e-10;1!UBERON:0004910;4.62e-10;1!UBERON:0004813;4.62e-10;1!UBERON:0005631;1.59e-08;10!UBERON:0000158;1.59e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.26e-27,3;UBERON:0001949,1.89e-12,3;UBERON:0003124,5.21e-12,7;UBERON:0001136,2.16e-10,1;UBERON:0001343,2.16e-10,1;UBERON:0004910,2.16e-10,1;UBERON:0005154,2.16e-10,1;UBERON:0005295,2.16e-10,1;UBERON:0004813,2.16e-10,1;UBERON:0005297,2.16e-10,1;UBERON:0005294,2.16e-10,1;UBERON:0010141,2.16e-10,1;UBERON:0005891,2.16e-10,1 | |||
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| ||
|short_description=p4@HMGB3 | |||
}} | }} |
Latest revision as of 22:16, 19 September 2015
Short description: | p4@HMGB3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HMGB3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000325307, NM_005342, uc004fep.2, uc004feq.2_5end |
EntrezGene: | HMGB3 |
HGNC: | 5004 |
UniProt: | O15347Q7Z684 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.26e-27 | 3 |
gingival epithelial cell | 1.89e-12 | 3 |
androgen binding protein secreting cell | 2.16e-10 | 1 |
seminiferous tubule epithelial cell | 2.16e-10 | 1 |
Sertoli cell | 2.16e-10 | 1 |
lung fibroblast | 2.37e-10 | 1 |
perirenal preadipocyte | 3.40e-10 | 1 |
multinucleate cell | 3.71e-10 | 1 |
myotube | 3.71e-10 | 1 |
embryonic stem cell | 7.01e-08 | 5 |
extraembryonic cell | 1.11e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.26e-27 | 3 |
gingival epithelium | 1.89e-12 | 3 |
chorion | 5.21e-12 | 7 |
mesothelium | 2.16e-10 | 1 |
seminiferous tubule of testis | 2.16e-10 | 1 |
epithelium of male gonad | 2.16e-10 | 1 |
epithelial cord | 2.16e-10 | 1 |
sex cord | 2.16e-10 | 1 |
seminiferous tubule epithelium | 2.16e-10 | 1 |
testis sex cord | 2.16e-10 | 1 |
genital ridge | 2.16e-10 | 1 |
primitive sex cord of indifferent gonad | 2.16e-10 | 1 |
coelomic epithelium | 2.16e-10 | 1 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 4.44e-10 | 1 |