FFCP PHASE1:Hg19::chr7:128577972..128578047,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3663 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6120 | |||
|TSSclassifier=strong | |||
|UniProt=Q13568,E9PC81,C9JYP7,F8WDH6,E7EW54,C9J7M2,Q64GA9 | |||
|association_with_transcript=0bp_to_ENST00000357234,ENST00000402030,ENST00000430204,ENST00000461416,ENST00000464557,ENST00000473787,ENST00000477535,ENST00000479582,ENST00000488569,NM_001098629,NM_001098630,NM_001242452,uc003vog.2,uc003voh.2,uc010lls.1,uc010llt.2,uc011kot.1,uc011kou.1_5end | |||
|cluster_id=chr7:128577972..128578047,+ | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_1_at_IRF5_5end | |||
|id=chr7:128577972..128578047,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.02e-45!140;CL:0000037!2.98e-45!172;CL:0000566!2.98e-45!172;CL:0000988!2.18e-44!182;CL:0002032!5.00e-43!165;CL:0000837!5.00e-43!165;CL:0002087!4.96e-40!119;CL:0002031!8.85e-38!124;CL:0000766!5.13e-35!76;CL:0000763!1.21e-33!112;CL:0000049!1.21e-33!112;CL:0000557!3.80e-33!71;CL:0002009!2.25e-32!65;CL:0002194!6.26e-32!63;CL:0000576!6.26e-32!63;CL:0000040!6.26e-32!63;CL:0000559!6.26e-32!63;CL:0000839!1.56e-30!70;CL:0002057!1.36e-27!42;CL:0000860!9.07e-25!45;CL:0000945!6.15e-10!24;CL:0000826!6.15e-10!24;CL:0000542!9.36e-09!53;CL:0000051!9.36e-09!53;CL:0000838!2.21e-08!52;CL:0002393!3.09e-07!9;CL:0002397!3.09e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000576;2.46e-23;48!CL:0000473;4.33e-23;39!CL:0000234;4.33e-23;39!CL:0000860;5.62e-23;33!CL:0002057;5.62e-23;33!CL:0000766;8.33e-19;69!CL:0002087;7.29e-14;104!CL:0000763;9.37e-14;100!CL:0000738;1.09e-12;136!CL:0000945;1.30e-11;24!CL:0000988;1.48e-09;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,8.19e-56,168;CL:0000738,4.52e-55,136;CL:0000988,1.31e-54,177;CL:0002032,5.52e-53,161;CL:0000837,5.52e-53,161;CL:0002087,4.74e-48,115;CL:0002031,2.04e-45,120;CL:0000766,6.81e-45,72;CL:0000763,7.99e-44,108;CL:0000049,7.99e-44,108;CL:0000557,9.08e-43,67;CL:0002009,8.21e-42,61;CL:0002194,2.32e-41,59;CL:0000576,2.32e-41,59;CL:0000040,2.32e-41,59;CL:0000559,2.32e-41,59;CL:0000839,2.11e-39,66;CL:0000473,1.16e-36,48;CL:0000234,1.16e-36,48;CL:0000860,7.05e-32,42;CL:0002057,7.05e-32,42;CL:0000945,1.54e-11,24;CL:0000826,1.54e-11,24;CL:0000542,4.66e-09,53;CL:0000051,4.66e-09,53;CL:0000838,1.22e-08,52;CL:0002393,3.60e-08,9;CL:0002397,3.60e-08,9 | |||
|ontology_enrichment_development_v019=CL:0002057;3.80e-23;42!CL:0000049;1.42e-12;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.54e-35!102;UBERON:0003061!1.54e-35!102;UBERON:0002193!3.51e-30!112;UBERON:0002371!2.32e-27!80;UBERON:0001474!2.97e-24!86;UBERON:0002405!2.05e-18!115;UBERON:0004765!2.23e-17!101;UBERON:0001434!2.23e-17!101;UBERON:0007023!8.51e-16!115;UBERON:0000178!5.38e-08!15;UBERON:0000179!5.38e-08!15;UBERON:0000463!5.38e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.16e-09;15!UBERON:0000179;4.16e-09;15!UBERON:0000463;4.16e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.24e-46,98;UBERON:0003061,1.24e-46,98;UBERON:0002193,7.34e-41,108;UBERON:0002371,8.37e-37,76;UBERON:0002405,1.58e-32,93;UBERON:0001474,1.40e-31,82;UBERON:0004765,7.99e-26,90;UBERON:0001434,1.03e-20,100;UBERON:0007023,8.63e-16,114;UBERON:0003081,1.30e-09,203;UBERON:0000178,4.73e-09,15;UBERON:0000179,4.73e-09,15;UBERON:0000463,4.73e-09,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0.410623275218653,0.125542639594803,18.0335637565165,16.8306208372389,15.9782886066769,14.5544782434094,4.98978217526377,17.3394058114005,0,2.71085326900425,1.84877005083394,3.09868802321207,1.56386155736164,13.2120197700681,17.7278530730201,29.2794893306407,32.3346197366619,45.2309257964647,36.2760905941257,48.6817822828613,65.2838092120246,61.2159028775871,39.541201973614,41.8372266430232,43.9949640183354,19.8212077372866,195.918519171384,217.736600549736,78.5121003230103,10.6871161028352,15.4916324060118,8.12558919566051,43.2957380947991,50.4876377607015,14.3823030044854,29.3840536676066,18.2929545433373,12.1474053901818,166.245055294105,186.897447191469,114.654457893295,21.7656928971438,20.425868088881,29.272645702792,153.010437141357,188.255333549693,76.2332844914959,22.3997815974346,15.4676607114777,13.607882659958,48.5887158517466,49.5368018918551,49.2697816944683,42.1232366799357,31.5371474967163,21.2157774440146,43.606949792411,38.9876687310217,41.4647629045719,7.03984977845291,12.561188059029,8.89509253863555,10.2415253415962,7.60752375368424,9.77079147922622,12.5598525829124,6.67837628174755,14.2303242277362,17.6171156811282,16.4377488093848,11.8954195721123,4.48406850385229,10.7987474757782,0.786839080455332,0.393010762749165,3.08402248499264,2.00623794468814,0.32592226663359,0.473447805734733,0,3.89936599098108,7.36514768687093,5.75988125917415,2.43723477388514,6.40456598628376,8.06367954871245,6.08420247033602,8.5668505513613,2.31842468588042,0,0,0,1.81294948316106,2.29932296161153,2.40539211837841,1.77113784413652,1.27426165729639,0.651083453856419,0.950452044448374,3.01150238155546,1.66382594500744,2.49861453104692,2.8413270245282,0,1.00803371612366,0,0.289648807765598,0,0,0.255725123687061,0,0,0,0,0,0.283604451492204,0.221729397462564,0.263504357079378,2.94702919869853,1.09288586487763,2.22470665670658,33.1038341527777,35.8707258836491,40.6851359187727,5.24679373471752,3.43196946468077,4.45749001595478,0,0,0,0,0.419499436209906,0.275118041940067,0,0,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0.22452937262617,0.337834441449967,0,0.949265659568129,0,7.9068250461638,7.75560528296651,2.18047026071267,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0.168776332241266,0,0.252433774244115,0,0,0,0,0.169560592310488,1.54608682530637,0.545492241181669,0.286804595389004,0.243947412259191,0.132529768321485,0,0,0.252320850875628,0.36497735907583,0,0.643240938192885,0,0,0,0.591534000199219,0,0.241011029883482,0.330881918197182,1.52515610864684,0.237270619111097,0.134831308160164,0.588664395376038,0,0,0,0,0,2.53510069643662,2.94848165003288,1.18157981336281,0,0.368965315629341,0.171567810298526,0.548751427043128,1.1240175325762,0.301586917234893,0.277765335475589,0,1.03993478527958,0,0.463721619900307,0,0.144366447761074,0,0,2.37061319387782,2.57545848628462,32.7468618096238,26.9104904910123,45.3325044980621,0,0.335964256397719,0.283550194484773,0.358234090811393,0.871901815541886,1.53353071666084,0,5.54705134283324,4.97587477297853,5.18831832301061,7.19581870530366,0.444485260045183,1.52795370223311,0,1.71072446022705,0.411309970813294,1.50171528921959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.602878754119172,0,1.79951384127703,45.0007988372405,54.2437658746697,71.6835394242308,0,0,0,0,0,0,0,3.74358444383662,2.15627574859517,3.7219480521127,0.508189248444927,0,0,0.167516265334349,0,4.49404214368309,2.99161459204025,2.07207756718018,0,0,0,0.831883446123229,0.535286966391485,0.946214490203608,0.234282829985426,0,2.27407504055985,0,0,0,0,0.195801157462741,0,11.1654734106359,21.3557058810431,19.3176879624234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,1.80455823272956,1.93370076765382,0,0,0,0.902399225814824,1.5403067420883,7.0591479225917,1.46139224653261,1.47772280450026,0,0.680374821106063,0.647747748306418,0,0.812839312631559,5.01689773854853,1.52925763827023,8.31076008928724,1.56712328305525,0.219259876645935,0,1.53870075069834,1.31205858279882,0.325378394664303,3.09123034943167,0.640986253728404,0.990113999047056,0,0.650060246036521,0,0,0,0.15350367472613,0.275673144969061,0,0.145016693914229,0.681813019328807,0,0.661139661443912,0.768760269460425,0.893288987462089,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.92947049429925,0,0,0,0,0,0.211107635297664,0.658589785919804,0,0.349934720244983,0.962221127255121,2.68120910214315,3.26672954583968,3.29503302718727,0.86101074534246,6.73885902670502,2.66058092122005,1.60806380144872,5.07447609232169,4.58782324285425,16.5197684280507,5.71756261098694,9.46133228098247,4.53931317834902,9.18053443304795,19.8281294073568,0,0,2.45040215981032,11.5197968577946,0,0,0,12.1743416574018,9.95827924688307,5.29183956809707,9.08941432768755,16.8478306868075,0,0.4700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.51027718874367,3.99192427855216,0.569822880276821,0.213454691755431,0,1.07790242527904,4.69281884806909,0.855690109280065,2.44137706989443,1.33151354837103,7.44713036286797,53.2143697223367 | |||
|short_description=p1@IRF5 | |||
}} |
Latest revision as of 04:53, 16 September 2015
Short description: | p1@IRF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_IRF5_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000357234, ENST00000402030, ENST00000430204, ENST00000461416, ENST00000464557, ENST00000473787, ENST00000477535, ENST00000479582, ENST00000488569, NM_001098629, NM_001098630, NM_001242452, uc003vog.2, uc003voh.2, uc010lls.1, uc010llt.2, uc011kot.1, uc011kou.1_5end |
EntrezGene: | IRF5 |
HGNC: | 6120 |
UniProt: | Q13568E9PC81C9JYP7F8WDH6E7EW54C9J7M2Q64GA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 8.19e-56 | 168 |
leukocyte | 4.52e-55 | 136 |
hematopoietic cell | 1.31e-54 | 177 |
hematopoietic oligopotent progenitor cell | 5.52e-53 | 161 |
hematopoietic multipotent progenitor cell | 5.52e-53 | 161 |
nongranular leukocyte | 4.74e-48 | 115 |
hematopoietic lineage restricted progenitor cell | 2.04e-45 | 120 |
myeloid leukocyte | 6.81e-45 | 72 |
myeloid cell | 7.99e-44 | 108 |
common myeloid progenitor | 7.99e-44 | 108 |
granulocyte monocyte progenitor cell | 9.08e-43 | 67 |
macrophage dendritic cell progenitor | 8.21e-42 | 61 |
monopoietic cell | 2.32e-41 | 59 |
monocyte | 2.32e-41 | 59 |
monoblast | 2.32e-41 | 59 |
promonocyte | 2.32e-41 | 59 |
myeloid lineage restricted progenitor cell | 2.11e-39 | 66 |
defensive cell | 1.16e-36 | 48 |
phagocyte | 1.16e-36 | 48 |
classical monocyte | 7.05e-32 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.05e-32 | 42 |
lymphocyte of B lineage | 1.54e-11 | 24 |
pro-B cell | 1.54e-11 | 24 |
lymphocyte | 4.66e-09 | 53 |
common lymphoid progenitor | 4.66e-09 | 53 |
lymphoid lineage restricted progenitor cell | 1.22e-08 | 52 |
intermediate monocyte | 3.60e-08 | 9 |
CD14-positive, CD16-positive monocyte | 3.60e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.24e-46 | 98 |
blood island | 1.24e-46 | 98 |
hemolymphoid system | 7.34e-41 | 108 |
bone marrow | 8.37e-37 | 76 |
immune system | 1.58e-32 | 93 |
bone element | 1.40e-31 | 82 |
skeletal element | 7.99e-26 | 90 |
skeletal system | 1.03e-20 | 100 |
adult organism | 8.63e-16 | 114 |
lateral plate mesoderm | 1.30e-09 | 203 |
blood | 4.73e-09 | 15 |
haemolymphatic fluid | 4.73e-09 | 15 |
organism substance | 4.73e-09 | 15 |