FFCP PHASE1:Hg19::chr8:48319394..48319421,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr8:48319394..48319421,+ | |||
|coexpression_cluster_id=C2533 | |||
|description=CAGE_peak_at_chr8:48319394..48319421,+ | |||
|id=chr8:48319394..48319421,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.48e-70!76;CL:0002057!4.55e-65!42;CL:0002194!4.44e-63!63;CL:0000576!4.44e-63!63;CL:0000040!4.44e-63!63;CL:0000559!4.44e-63!63;CL:0002009!9.53e-61!65;CL:0000860!5.86e-60!45;CL:0000763!7.61e-58!112;CL:0000049!7.61e-58!112;CL:0000839!1.71e-55!70;CL:0000557!1.57e-54!71;CL:0000738!9.01e-45!140;CL:0000037!3.71e-44!172;CL:0000566!3.71e-44!172;CL:0000988!9.51e-41!182;CL:0002032!6.57e-40!165;CL:0000837!6.57e-40!165;CL:0002087!8.56e-39!119;CL:0002031!1.78e-31!124;CL:0000094!1.34e-14!8;CL:0002393!2.43e-14!9;CL:0002397!2.43e-14!9;CL:0000134!1.55e-13!358;CL:0002320!6.03e-13!365;CL:0000219!7.03e-11!390;CL:0000081!2.99e-10!11;CL:0000048!1.90e-08!430;CL:0000775!2.52e-08!3;CL:0000034!3.70e-08!444;CL:0000723!4.15e-08!436;CL:0000842!7.53e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.58e-30;8!CL:0000860;6.86e-28;33!CL:0002057;6.86e-28;33!CL:0000576;3.54e-25;48!CL:0000473;2.61e-22;39!CL:0000234;2.61e-22;39!CL:0000081;5.77e-22;11!CL:0000766;1.85e-21;69!CL:0000775;3.97e-16;3!CL:0000763;5.43e-13;100!CL:0000771;2.38e-11;2!CL:0000738;9.35e-09;136!CL:0002393;5.15e-08;6!CL:0002397;5.15e-08;6!CL:0000226;1.19e-07;3!CL:0000767;1.19e-07;3!CL:0000842;1.19e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.94e-48,72;CL:0000763,3.21e-35,108;CL:0000049,3.21e-35,108;CL:0000860,1.02e-34,42;CL:0002057,1.02e-34,42;CL:0000473,1.55e-33,48;CL:0000234,1.55e-33,48;CL:0002194,5.26e-32,59;CL:0000576,5.26e-32,59;CL:0000040,5.26e-32,59;CL:0000559,5.26e-32,59;CL:0002009,8.06e-31,61;CL:0000094,1.74e-30,8;CL:0000839,3.64e-28,66;CL:0000557,1.11e-27,67;CL:0000738,1.13e-26,136;CL:0000037,6.89e-24,168;CL:0000988,2.42e-22,177;CL:0000081,6.18e-22,11;CL:0002032,1.33e-21,161;CL:0000837,1.33e-21,161;CL:0002087,1.23e-17,115;CL:0000775,2.78e-16,3;CL:0002031,1.69e-13,120;CL:0000771,2.57e-11,2;CL:0000134,1.25e-08,354;CL:0002320,2.49e-08,361;CL:0000226,1.29e-07,3;CL:0000842,1.29e-07,3;CL:0000767,1.53e-07,3;CL:0000219,2.81e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;5.79e-26;42!CL:0000049;9.04e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.05e-60!102;UBERON:0003061!2.05e-60!102;UBERON:0002193!1.37e-55!112;UBERON:0002371!6.05e-47!80;UBERON:0001474!9.14e-43!86;UBERON:0004765!1.73e-34!101;UBERON:0001434!1.73e-34!101;UBERON:0002405!3.87e-33!115;UBERON:0003081!3.35e-20!216;UBERON:0002204!6.99e-16!167;UBERON:0000178!7.76e-15!15;UBERON:0000179!7.76e-15!15;UBERON:0000463!7.76e-15!15;UBERON:0002384!3.83e-12!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.37e-26;15!UBERON:0000179;2.37e-26;15!UBERON:0000463;2.37e-26;15!UBERON:0002390;4.26e-11;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.10e-39,98;UBERON:0003061,1.10e-39,98;UBERON:0002193,1.85e-35,108;UBERON:0000178,1.43e-26,15;UBERON:0000179,1.43e-26,15;UBERON:0000463,1.43e-26,15;UBERON:0002371,6.85e-24,76;UBERON:0001474,8.04e-22,82;UBERON:0004765,1.73e-19,90;UBERON:0002405,1.03e-18,93;UBERON:0001434,4.30e-17,100;UBERON:0003081,5.87e-16,203;UBERON:0002204,1.88e-08,167;UBERON:0000926,4.85e-08,315;UBERON:0004120,4.85e-08,315;UBERON:0006603,4.85e-08,315;UBERON:0002384,6.38e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30297638858328,1.08371286321253,0,0,0,0,0,0,2.21598163412751,1.80490002723128,1.95309783644267,0.223915474239924,0,1.28787783817093,1.59938062657521,0.377875943688809,1.21292030593908,1.16214518452842,0,0.619412741790207,0.863077176966451,2.0492856522328,0.47296445977717,2.06847408441971,0,1.35426486594342,1.31769637679823,0.818718450173537,0.449446968890169,0,2.24650318953266,0.639337125799041,0.659702600373432,0.398927315243264,1.27867425159808,0.580418477257168,0.56738522469114,0.622822248995575,0,2.60741459210101,0.434377689410233,0.605399502633369,1.47311054395026,1.58231193720442,0.422510572623884,0.212604299965044,0.419317291016752,7.86300418025466,4.35512989240368,6.91120022797445,0,0.19891667719909,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451725357233318,0,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0.238490624305342,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,2.10833939483032,0,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0,0,2.24702107184155,5.9832291840805,1.65766205374414,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,2.06768026122887,1.50999940573032,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,3.04468565539302,5.35246044999663,2.84823593587081,2.38231775457789,1.64544909234478,2.59389324477087,0,2.37937552888281,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0.456469358066384,0.313359791546046,0,0,0.481764225311099,0,0.425846237690326,1.37402137902306,0,1.11838053946208,0.667396566847634,2.73543333562856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.215166616178029,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr8:48319394..48319421,+ | |||
}} |
Latest revision as of 18:40, 31 July 2015
Short description: | p@chr8:48319394..48319421, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:48319394..48319421, + |
Coexpression cluster: | C2533_CD14_Neutrophils_Whole_Eosinophils_blood_Peripheral_CD14CD16 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.94e-48 | 72 |
myeloid cell | 3.21e-35 | 108 |
common myeloid progenitor | 3.21e-35 | 108 |
classical monocyte | 1.02e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.02e-34 | 42 |
defensive cell | 1.55e-33 | 48 |
phagocyte | 1.55e-33 | 48 |
monopoietic cell | 5.26e-32 | 59 |
monocyte | 5.26e-32 | 59 |
monoblast | 5.26e-32 | 59 |
promonocyte | 5.26e-32 | 59 |
macrophage dendritic cell progenitor | 8.06e-31 | 61 |
granulocyte | 1.74e-30 | 8 |
myeloid lineage restricted progenitor cell | 3.64e-28 | 66 |
granulocyte monocyte progenitor cell | 1.11e-27 | 67 |
leukocyte | 1.13e-26 | 136 |
hematopoietic stem cell | 6.89e-24 | 168 |
hematopoietic cell | 2.42e-22 | 177 |
blood cell | 6.18e-22 | 11 |
hematopoietic oligopotent progenitor cell | 1.33e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.33e-21 | 161 |
nongranular leukocyte | 1.23e-17 | 115 |
neutrophil | 2.78e-16 | 3 |
hematopoietic lineage restricted progenitor cell | 1.69e-13 | 120 |
eosinophil | 2.57e-11 | 2 |
mesenchymal cell | 1.25e-08 | 354 |
connective tissue cell | 2.49e-08 | 361 |
single nucleate cell | 1.29e-07 | 3 |
mononuclear cell | 1.29e-07 | 3 |
basophil | 1.53e-07 | 3 |
motile cell | 2.81e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.10e-39 | 98 |
blood island | 1.10e-39 | 98 |
hemolymphoid system | 1.85e-35 | 108 |
blood | 1.43e-26 | 15 |
haemolymphatic fluid | 1.43e-26 | 15 |
organism substance | 1.43e-26 | 15 |
bone marrow | 6.85e-24 | 76 |
bone element | 8.04e-22 | 82 |
skeletal element | 1.73e-19 | 90 |
immune system | 1.03e-18 | 93 |
skeletal system | 4.30e-17 | 100 |
lateral plate mesoderm | 5.87e-16 | 203 |
musculoskeletal system | 1.88e-08 | 167 |
mesoderm | 4.85e-08 | 315 |
mesoderm-derived structure | 4.85e-08 | 315 |
presumptive mesoderm | 4.85e-08 | 315 |
connective tissue | 6.38e-08 | 371 |