FFCP PHASE1:Mm9::chr8:55162490..55162506,+: Difference between revisions
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{{FFCP|EntrezGene=22341|HGNC=|MCL_coexpression_id=333|UniProt=P97953,C6F5S9|association_with_transcript=-379bp_to_ENSMUST00000033919,NM_009506,uc009lsc.1,uc012gdw.1,uc012gdx.1_5end|description=CAGE_peak_2_at_Vegfc_5end|id=chr8:55162490..55162506,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004535!3.26e-10!23;UBERON:0001009!3.26e-10!23;UBERON:0000468!1.60e-09!333;UBERON:0007100!3.76e-09!18;UBERON:0000948!3.76e-09!18;UBERON:0005498!3.76e-09!18;UBERON:0004140!3.76e-09!18;UBERON:0009881!3.76e-09!18;UBERON:0004141!3.76e-09!18;UBERON:0003084!3.76e-09!18;UBERON:0007005!3.76e-09!18;UBERON:0004139!3.76e-09!18;UBERON:0004291!3.76e-09!18;UBERON:0004872!7.80e-08!33;UBERON:0002048!9.67e-08!14;UBERON:0000117!9.67e-08!14;UBERON:0000171!9.67e-08!14;UBERON:0000170!9.67e-08!14;UBERON:0005597!9.67e-08!14;UBERON:0000118!9.67e-08!14;UBERON:0000922!2.79e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.39e-11,23;UBERON:0001009,1.39e-11,23;UBERON:0007100,8.76e-11,18;UBERON:0000948,8.76e-11,18;UBERON:0005498,8.76e-11,18;UBERON:0004140,8.76e-11,18;UBERON:0009881,8.76e-11,18;UBERON:0004141,8.76e-11,18;UBERON:0003084,8.76e-11,18;UBERON:0007005,8.76e-11,18;UBERON:0004139,8.76e-11,18;UBERON:0004291,8.76e-11,18;UBERON:0002048,4.50e-09,14;UBERON:0000117,4.50e-09,14;UBERON:0000171,4.50e-09,14;UBERON:0000170,4.50e-09,14;UBERON:0005597,4.50e-09,14;UBERON:0000118,4.50e-09,14;UBERON:0004872,7.07e-08,33;UBERON:0005153,3.08e-07,17;UBERON:0005178,4.84e-07,17;UBERON:0005181,4.84e-07,17;UBERON:0002224,4.84e-07,17;UBERON:0000915,4.84e-07,17;UBERON:0008947,4.84e-07,17;UBERON:0003258,4.84e-07,17|phase1_expression=1.28119077683835,0.697950815278722,0.909998478779072,1.20985684522732,0.500895729946347,0,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.595303031057488,0,0,0.47997726838022,0.22940928106717,0,0.430761996159075,0,0.190023419456374,0.252030129759931,0,0,0,0,0.866554859253824,0.332469290716985,0.408338712524738,0,0,0,0,0,0,3.39921408534059,4.1564541800001,1.46837401729345,0,1.74420125104357,0.878744730937887,1.1665793944457,0.979904951377538,1.43752564364972,0,0,0,18.0081605225163,30.9456115133857,36.6127185516984,0.202316460859598,0.528990979272033,0,0.338844532069132,0,0,0,0,0.299600110518405,0.384218305321555,0.414758449233911,0.810035629990144,0.841299845405528,1.14260393761521,0,0.489963196859816,0.383381884072945,0.919218786610021,0,0.127687338085188,0.46081959976873,1.45074916503213,1.09785172322892,0.52091337055676,0.558365998002762,0,0.30559649555362,0.883885756421003,0.569486723196412,0.559198337475902,0.302904773332736,0.151143120213571,1.73918693221007,0.860423876981386,0,0,0,0,0.421333260395256,0,0,0,0.563373679106722,0,0,0,0.649473123033642,0,1.01104889002957,0.11418387971906,2.07150306917737,0.593768556259299,1.38788261412909,1.52232739156071,0.922461989024234,1.20578112442098,1.05829836422134,1.13099932196708,2.96633961281249,0.722996784599558,0.884610551949874,2.42650274921114,1.32504911076236,1.45462575940567,0,1.46390398505774,0.41889341362691,1.02182822083437,0.359445373517761,0,0.508280908292259,0.299581278809645,0,0,0.173824320192276,0.255715457330331,0.62336413367868,0.162241263067758,1.12023300235348,0.870848794270651,0.252722758433675,0.841767423545896,1.95180664444056,0.919608417733892,0.540186389416048,1.20563854268572,0.680364991513279,0.896796041993948,0.562210347358373,0.258703370739016,1.72454394346274,0.945530400839096,2.46331573829528,1.53437012699302,3.61461423993277,3.48252166522167,1.4404749548556,0.995171334092466,0.702213187313235,0.51469581422943,0,2.69263504296152,2.81431271977315,3.6012412292203,3.78791576936336,4.9191057936851,3.08534225774756,3.48800917125612,2.14618721119695,1.40118410840603,1.48103864922132,2.79084688934462,1.4592385718254,2.19299981137998,2.41505126820156,1.47627060636409,1.05144974282064,0.720332286654991,0.330418782983798,0.264450566663544,1.91959425481711,2.55460339046482,2.83508414908605,3.63030344322017,2.89091456998331,1.90225626112559,0.949058123089023,1.81168850196412,2.01068167040216,2.38747766449381,1.75467678407208,0,0.864552199498777,0.796565093017469,1.89667900953082,1.94222471436539,1.1270773567308,1.62921062276251,0.387904974335251,0.631222379012867,1.20149420536089,0.147610147979602,0.31399745568275,0.370191491765402,0.592905254174298,1.33476084572875,0.982794975566015,0.674586337154561,0.405720242777006,0.241177159752417,1.2731292589071,2.30156909960649,1.13494658742525,0.823684239564244,7.18841032636773,0.372140947668503,1.5601883655728,0.252578877947112,1.25578189465339,0.482443521363367,3.8798169934987,2.4633883530163,3.58522948172457,2.8856664581782,2.58159273117352,1.67506257441816,2.85652369063216,4.48807390072937,4.72905432318573,4.65075848262427,2.39182152986231,2.29408640602033,1.55416483679306,1.73578870297814,0,0,0,1.37968373152366,0.321101179975584,0.234423373184406,0.655739781506702,0.757412781613119,0,2.34263246577983,0.4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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22341 | |||
|HGNC= | |||
|MCL_coexpression_id=333 | |||
|TSSclassifier=NA | |||
|UniProt=P97953,C6F5S9 | |||
|association_with_transcript=-379bp_to_ENSMUST00000033919,NM_009506,uc009lsc.1,uc012gdw.1,uc012gdx.1_5end | |||
|cluster_id=chr8:55162490..55162506,+ | |||
|description=CAGE_peak_2_at_Vegfc_5end | |||
|id=chr8:55162490..55162506,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!3.26e-10!23;UBERON:0001009!3.26e-10!23;UBERON:0000468!1.60e-09!333;UBERON:0007100!3.76e-09!18;UBERON:0000948!3.76e-09!18;UBERON:0005498!3.76e-09!18;UBERON:0004140!3.76e-09!18;UBERON:0009881!3.76e-09!18;UBERON:0004141!3.76e-09!18;UBERON:0003084!3.76e-09!18;UBERON:0007005!3.76e-09!18;UBERON:0004139!3.76e-09!18;UBERON:0004291!3.76e-09!18;UBERON:0004872!7.80e-08!33;UBERON:0002048!9.67e-08!14;UBERON:0000117!9.67e-08!14;UBERON:0000171!9.67e-08!14;UBERON:0000170!9.67e-08!14;UBERON:0005597!9.67e-08!14;UBERON:0000118!9.67e-08!14;UBERON:0000922!2.79e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004535,1.39e-11,23;UBERON:0001009,1.39e-11,23;UBERON:0007100,8.76e-11,18;UBERON:0000948,8.76e-11,18;UBERON:0005498,8.76e-11,18;UBERON:0004140,8.76e-11,18;UBERON:0009881,8.76e-11,18;UBERON:0004141,8.76e-11,18;UBERON:0003084,8.76e-11,18;UBERON:0007005,8.76e-11,18;UBERON:0004139,8.76e-11,18;UBERON:0004291,8.76e-11,18;UBERON:0002048,4.50e-09,14;UBERON:0000117,4.50e-09,14;UBERON:0000171,4.50e-09,14;UBERON:0000170,4.50e-09,14;UBERON:0005597,4.50e-09,14;UBERON:0000118,4.50e-09,14;UBERON:0004872,7.07e-08,33;UBERON:0005153,3.08e-07,17;UBERON:0005178,4.84e-07,17;UBERON:0005181,4.84e-07,17;UBERON:0002224,4.84e-07,17;UBERON:0000915,4.84e-07,17;UBERON:0008947,4.84e-07,17;UBERON:0003258,4.84e-07,17 | |||
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| |||
|short_description=p2@Vegfc | |||
}} |
Latest revision as of 15:16, 25 September 2015
Short description: | p2@Vegfc |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Vegfc_5end |
Coexpression cluster: | MCL_coexpression_mm9:333 |
Association with transcript: | -379bp_to_ENSMUST00000033919, NM_009506, uc009lsc.1, uc012gdw.1, uc012gdx.1_5end |
EntrezGene: | Vegfc |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiovascular system | 1.39e-11 | 23 |
circulatory system | 1.39e-11 | 23 |
primary circulatory organ | 8.76e-11 | 18 |
heart | 8.76e-11 | 18 |
primitive heart tube | 8.76e-11 | 18 |
primary heart field | 8.76e-11 | 18 |
anterior lateral plate mesoderm | 8.76e-11 | 18 |
heart tube | 8.76e-11 | 18 |
heart primordium | 8.76e-11 | 18 |
cardiac mesoderm | 8.76e-11 | 18 |
cardiogenic plate | 8.76e-11 | 18 |
heart rudiment | 8.76e-11 | 18 |
lung | 4.50e-09 | 14 |
respiratory tube | 4.50e-09 | 14 |
respiration organ | 4.50e-09 | 14 |
pair of lungs | 4.50e-09 | 14 |
lung primordium | 4.50e-09 | 14 |
lung bud | 4.50e-09 | 14 |
splanchnic layer of lateral plate mesoderm | 7.07e-08 | 33 |
epithelial bud | 3.08e-07 | 17 |
thoracic cavity element | 4.84e-07 | 17 |
thoracic segment organ | 4.84e-07 | 17 |
thoracic cavity | 4.84e-07 | 17 |
thoracic segment of trunk | 4.84e-07 | 17 |
respiratory primordium | 4.84e-07 | 17 |
endoderm of foregut | 4.84e-07 | 17 |