FF:10262-104D1: Difference between revisions

Latest revision as of 13:57, 3 June 2020

Name:	Follicle Associated Epithelium, pool2
Species:	Mouse (Mus musculus)
Library ID:	CNhs13211
Sample type:	tissues
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	Balb/c
tissue	Peyer's patch
dev stage	NA
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Shinji Fukuda (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	FAE_b
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005121

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13211		CAGE		DRX008921		DRR009795

Accession ID Mm9

Library id		BAM		CTSS
CNhs13211		DRZ001220		DRZ002603

Accession ID Mm10

Library id		BAM		CTSS
CNhs13211		DRZ012570		DRZ013953

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13211

0	0
1	0
10	0
100	0
1000	-0.00325
1001	-0.0346
1002	-0.116
1003	-0.125
1004	0
1005	1.03
1006	-0.326
1007	-0.141
1008	2.03
1009	-0.19
101	-0.0559
1010	0
1011	-0.217
1012	0
1013	0.294
1014	-0.0874
1015	-0.184
1016	-0.484
1017	0
1018	0.589
1019	0
102	0
1020	0
1021	0.244
1022	-0.0956
1023	0
1024	-0.305
1025	0
1026	0
1027	-0.048
1028	0
1029	-0.0623
103	-0.0887
1030	0.0645
1031	-0.911
1032	0.758
1033	-0.00204
1034	0.0344
1035	0
1036	-0.167
1037	0
1038	-0.178
1039	0.0463
104	0.0645
1040	-0.678
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13211

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00228
MA0003.1	MA0003.1	0.222
MA0004.1	MA0004.1	0.988
MA0006.1	MA0006.1	0.116
MA0007.1	MA0007.1	0.619
MA0009.1	MA0009.1	0.549
MA0014.1	MA0014.1	0.262
MA0017.1	MA0017.1	8.17881e-19
MA0018.2	MA0018.2	0.121
MA0019.1	MA0019.1	0.109
MA0024.1	MA0024.1	0.0843
MA0025.1	MA0025.1	0.823
MA0027.1	MA0027.1	0.942
MA0028.1	MA0028.1	0.0635
MA0029.1	MA0029.1	0.909
MA0030.1	MA0030.1	0.514
MA0031.1	MA0031.1	0.817
MA0035.2	MA0035.2	6.83603e-4
MA0038.1	MA0038.1	0.287
MA0039.2	MA0039.2	0.00104
MA0040.1	MA0040.1	0.253
MA0041.1	MA0041.1	0.33
MA0042.1	MA0042.1	0.514
MA0043.1	MA0043.1	0.0333
MA0046.1	MA0046.1	4.82555e-36
MA0047.2	MA0047.2	0.0626
MA0048.1	MA0048.1	0.599
MA0050.1	MA0050.1	3.08958e-4
MA0051.1	MA0051.1	0.00108
MA0052.1	MA0052.1	2.54624e-4
MA0055.1	MA0055.1	0.722
MA0057.1	MA0057.1	0.12
MA0058.1	MA0058.1	0.925
MA0059.1	MA0059.1	0.491
MA0060.1	MA0060.1	0.00455
MA0061.1	MA0061.1	0.00443
MA0062.2	MA0062.2	1.06509e-4
MA0065.2	MA0065.2	9.03496e-11
MA0066.1	MA0066.1	0.0779
MA0067.1	MA0067.1	0.389
MA0068.1	MA0068.1	0.147
MA0069.1	MA0069.1	0.836
MA0070.1	MA0070.1	0.0641
MA0071.1	MA0071.1	0.21
MA0072.1	MA0072.1	0.82
MA0073.1	MA0073.1	0.764
MA0074.1	MA0074.1	0.355
MA0076.1	MA0076.1	0.134
MA0077.1	MA0077.1	0.894
MA0078.1	MA0078.1	0.547
MA0079.2	MA0079.2	0.424
MA0080.2	MA0080.2	5.36858e-10
MA0081.1	MA0081.1	0.251
MA0083.1	MA0083.1	0.00391
MA0084.1	MA0084.1	0.551
MA0087.1	MA0087.1	0.678
MA0088.1	MA0088.1	0.177
MA0090.1	MA0090.1	0.67
MA0091.1	MA0091.1	0.536
MA0092.1	MA0092.1	0.419
MA0093.1	MA0093.1	0.956
MA0099.2	MA0099.2	1.54722e-6
MA0100.1	MA0100.1	0.673
MA0101.1	MA0101.1	0.00206
MA0102.2	MA0102.2	0.339
MA0103.1	MA0103.1	2.00811e-6
MA0104.2	MA0104.2	0.49
MA0105.1	MA0105.1	0.00331
MA0106.1	MA0106.1	0.199
MA0107.1	MA0107.1	0.00295
MA0108.2	MA0108.2	0.778
MA0111.1	MA0111.1	0.915
MA0112.2	MA0112.2	3.38454e-4
MA0113.1	MA0113.1	0.481
MA0114.1	MA0114.1	1.22626e-19
MA0115.1	MA0115.1	2.93576e-12
MA0116.1	MA0116.1	0.0503
MA0117.1	MA0117.1	0.869
MA0119.1	MA0119.1	0.182
MA0122.1	MA0122.1	0.533
MA0124.1	MA0124.1	0.251
MA0125.1	MA0125.1	0.281
MA0131.1	MA0131.1	0.794
MA0135.1	MA0135.1	0.413
MA0136.1	MA0136.1	1.10831e-16
MA0137.2	MA0137.2	0.0982
MA0138.2	MA0138.2	0.78
MA0139.1	MA0139.1	0.0483
MA0140.1	MA0140.1	0.104
MA0141.1	MA0141.1	1.08004e-4
MA0142.1	MA0142.1	0.111
MA0143.1	MA0143.1	0.114
MA0144.1	MA0144.1	0.0298
MA0145.1	MA0145.1	0.0288
MA0146.1	MA0146.1	0.216
MA0147.1	MA0147.1	0.73
MA0148.1	MA0148.1	0.0226
MA0149.1	MA0149.1	0.0216
MA0150.1	MA0150.1	0.0273
MA0152.1	MA0152.1	0.113
MA0153.1	MA0153.1	1.13201e-33
MA0154.1	MA0154.1	0.0103
MA0155.1	MA0155.1	0.743
MA0156.1	MA0156.1	7.232e-9
MA0157.1	MA0157.1	0.725
MA0159.1	MA0159.1	2.21594e-4
MA0160.1	MA0160.1	0.00442
MA0162.1	MA0162.1	0.287
MA0163.1	MA0163.1	0.00605
MA0164.1	MA0164.1	0.464
MA0258.1	MA0258.1	0.0172
MA0259.1	MA0259.1	0.584

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13211

Novel motif	Logo	P-value
1	1	0.116
10	10	0.0981
100	100	0.85
101	101	0.797
102	102	0.894
103	103	0.0831
104	104	0.833
105	105	0.538
106	106	0.0401
107	107	0.179
108	108	0.744
109	109	0.0258
11	11	0.0966
110	110	0.188
111	111	0.0422
112	112	0.013
113	113	0.647
114	114	0.0503
115	115	0.541
116	116	0.191
117	117	0.0302
118	118	0.312
119	119	0.0666
12	12	0.576
120	120	0.387
121	121	0.377
122	122	0.915
123	123	0.115
124	124	0.626
125	125	0.53
126	126	0.118
127	127	0.173
128	128	0.12
129	129	0.104
13	13	0.00126
130	130	0.877
131	131	0.921
132	132	0.788
133	133	0.89
134	134	0.905
135	135	0.139
136	136	0.0981
137	137	0.796
138	138	0.292
139	139	0.118
14	14	0.739
140	140	0.113
141	141	0.0922
142	142	0.396
143	143	0.806
144	144	0.232
145	145	0.0756
146	146	0.427
147	147	0.991
148	148	0.379
149	149	0.907
15	15	0.145
150	150	0.434
151	151	0.504
152	152	0.0729
153	153	0.703
154	154	0.915
155	155	0.395
156	156	0.0445
157	157	0.504
158	158	0.732
159	159	0.705
160	160	0.561
161	161	0.397
162	162	0.456
163	163	0.31
164	164	0.151
165	165	0.134
166	166	0.577
167	167	0.511
168	168	0.907
169	169	0.0116
17	17	0.0621
18	18	0.711
19	19	0.233
2	2	0.735
20	20	0.683
21	21	0.495
22	22	0.348
23	23	0.625
24	24	0.712
25	25	0.425
26	26	0.00814
27	27	0.576
28	28	0.39
29	29	0.0557
3	3	0.0824
30	30	0.439
31	31	0.806
32	32	0.107
33	33	0.216
34	34	0.88
35	35	0.416
36	36	0.231
37	37	0.0387
38	38	0.401
39	39	0.395
4	4	0.344
40	40	0.173
41	41	0.463
42	42	0.442
43	43	0.188
44	44	0.0229
45	45	0.479
46	46	0.171
47	47	0.193
48	48	0.13
49	49	0.242
5	5	0.442
50	50	0.458
51	51	0.641
52	52	0.244
53	53	0.525
54	54	0.507
55	55	0.891
56	56	0.391
57	57	0.95
58	58	0.252
59	59	0.116
6	6	0.467
60	60	0.0478
61	61	0.259
62	62	0.124
63	63	0.121
64	64	0.612
65	65	0.231
66	66	0.975
67	67	0.47
68	68	0.019
69	69	0.716
7	7	0.0692
70	70	0.00519
71	71	0.0658
72	72	0.4
73	73	0.0517
74	74	0.422
75	75	0.018
76	76	0.638
77	77	0.109
78	78	0.0275
79	79	0.601
8	8	0.0988
80	80	0.679
81	81	0.743
82	82	0.045
83	83	0.113
84	84	0.217
85	85	0.0916
86	86	0.139
87	87	0.0232
88	88	0.428
89	89	0.193
9	9	0.832
90	90	0.0467
91	91	0.563
92	92	0.286
93	93	0.224
94	94	0.574
95	95	0.0283
96	96	0.735
97	97	0.864
98	98	0.322
99	99	0.267

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13211

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011473 mouse Follicle Associated Epithelium sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001962 (gut-associated lymphoid tissue)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001961 (mucosa-associated lymphoid tissue)
0001744 (lymphoid tissue)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002465 (lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011473 (mouse Follicle Associated Epithelium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008784
+|DRA_sample_Accession=CAGE@SAMD00005121
+|accession_numbers=CAGE;DRX008921;DRR009795;DRZ001220;DRZ002603;DRZ012570;DRZ013953
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001962,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001961,UBERON:0001744,UBERON:0010317,UBERON:0001555,UBERON:0002465,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:51787434..51787448,-!p1@Spib!2.61!573.73!Spib;;chr10:80555320..80555378,-!p1@Creb3l3!2.61!464.30!Creb3l3;;chr3:3634145..3634161,+!p1@Hnf4g!2.49!306.71!Hnf4g;;chr5:148118639..148118715,-!p1@Cdx2!1.93!84.96!Cdx2;;chr2:163332558..163332596,+!p2@Hnf4a!1.91!79.52!Hnf4a;;chr2:163372884..163372904,+!p1@Hnf4a!1.86!71.84!Hnf4a;;chr8:77396591..77396639,+!p1@Isx!1.82!64.64!Isx;;chr6:86619104..86619119,-!p1@Mxd1!1.78!453.42!Mxd1;;chr1:137155026..137155042,-!p1@Elf3!1.75!305.91!Elf3;;chr16:38294860..38294924,-!p1@Nr1i2!1.67!46.24!Nr1i2;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.61!50.24!Zbtb11;;chr9:51021788..51021802,+!p1@Pou2af1!1.59!44.96!Pou2af1;;chr3:3508024..3508069,+!p2@Hnf4g!1.59!38.08!Hnf4g;;chr10:88969376..88969395,-!p1@Nr1h4!1.52!31.84!Nr1h4;;chr1:173144100..173144138,+!p2@Nr1i3!1.51!31.20!Nr1i3;;chr14:63864056..63864102,-!p1@Gata4!1.45!46.08!Gata4;;chr6:64679112..64679126,+!p1@Atoh1!1.43!25.92!Atoh1;;chr5:135582751..135582788,+!p1@Mlxipl!1.42!99.20!Mlxipl;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.42!25.28!Sp140;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.12!Spdef;;chr18:61195865..61195880,-!p1@Cdx1!1.40!24.16!Cdx1;;chr2:180069370..180069409,-!p1@Gata5!1.38!27.04!Gata5;;chr18:61195843..61195864,-!p2@Cdx1!1.38!22.72!Cdx1;;chr18:64499674..64499696,+!p1@Onecut2!1.37!38.72!Onecut2;;chr15:97738692..97738747,-!p1@Vdr!1.35!114.39!Vdr;;chr13:30841099..30841116,+!p1@Irf4!1.35!33.28!Irf4;;chr18:64499706..64499721,+!p2@Onecut2!1.35!30.08!Onecut2;;chr2:103123925..103123959,-!p3@Ehf!1.31!19.52!Ehf;;chr14:99697871..99697934,+!p1@Klf5!1.30!363.18!Klf5;;chr8:77397095..77397127,+!p2@Isx!1.28!18.08!Isx;;chr10:80555398..80555409,-!p2@Creb3l3!1.28!17.92!Creb3l3;;chr19:46380235..46380277,+!p3@Nfkb2!1.27!37.76!Nfkb2;;chr4:124805061..124805087,-!p1@Zc3h12a!1.26!52.80!Zc3h12a;;chr8:77397492..77397514,+!p3@Isx!1.25!16.80!Isx;;chr1:194979315..194979359,+!p1@Irf6!1.24!98.56!Irf6;;chr8:77396650..77396662,+!p4@Isx!1.23!16.16!Isx;;chr5:148118840..148118857,-!p2@Cdx2!1.18!14.24!Cdx2;;chr7:19608891..19608895,-!p1@Foxa3!1.17!18.08!Foxa3;;chr5:148118792..148118806,-!p3@Cdx2!1.17!13.76!Cdx2;;chr5:120121169..120121171,+!p4@Tbx3!1.14!23.04!Tbx3;;chr5:115421065..115421088,-!p1@Hnf1a!1.11!12.00!Hnf1a;;chr7:20213752..20213778,-!p2@Relb!1.10!11.68!Relb;;chr1:87497247..87497279,+!p2@Gm2427,p2@Sp140!1.09!11.20!Sp140;;chr17:25707623..25707639,-!p1@Sox8!1.08!47.20!Sox8;;chr4:122673187..122673201,+!p2@Mycl1!1.08!19.84!Mycl1;;chr2:103143336..103143367,-!p1@Ehf!1.07!17.44!Ehf;;chr2:163372869..163372882,+!p3@Hnf4a!1.04!10.08!Hnf4a;;chr10:80555285..80555291,-!p4@Creb3l3!1.04!10.08!Creb3l3;;chr10:80555299..80555306,-!p3@Creb3l3!1.03!9.60!Creb3l3;;chr1:173144144..173144176,+!p1@Nr1i3!1.03!9.60!Nr1i3;;chr2:28477452..28477483,-!p1@Gfi1b!1.02!11.84!Gfi1b;;chr19:5560600..5560617,-!p1@Ovol1!1.00!11.04!Ovol1;;chr8:77397190..77397202,+!p5@Isx!1.00!8.96!Isx;;chr7:20408047..20408125,-!p1@Bcl3!0.98!99.52!Bcl3;;chr14:76887526..76887555,+!p10@Tsc22d1!0.98!8.48!Tsc22d1;;chr1:38721792..38721845,-!p1@Aff3!0.95!9.92!Aff3;;chr11:70500401..70500460,-!p3@Camta2!0.95!7.84!Camta2;;chr2:133377954..133377973,+!p1@Bmp2!0.93!24.64!Bmp2;;chr11:53583544..53583559,+!p1@Irf1!0.92!127.67!Irf1;;chr7:148452314..148452329,-!p1@Irf7!0.92!53.28!Irf7;;chr5:144951153..144951203,+!p1@Bhlha15!0.92!10.72!Bhlha15;;chr1:194979361..194979373,+!p2@Irf6!0.92!10.08!Irf6;;chr5:148081686..148081715,+!p1@Pdx1!0.92!7.36!Pdx1;;chr12:56593574..56593592,-!p1@Nfkbia!0.91!378.86!Nfkbia;;chr4:134676555..134676575,+!p2@Runx3!0.91!7.20!Runx3;;chr3:3508005..3508021,+!p3@Hnf4g!0.91!7.20!Hnf4g;;chr19:46379199..46379301,+!p1@Nfkb2!0.89!40.16!Nfkb2;;chr11:98636400..98636418,-!p4@Nr1d1!0.89!9.12!Nr1d1;;chr4:44723559..44723593,-!p1@Pax5!0.89!6.72!Pax5;;chr8:123260252..123260264,+!p1@Irf8!0.88!49.28!Irf8;;chr4:148178559..148178603,+!p1@Casz1!0.88!19.52!Casz1;;chr4:133109285..133109308,+!p1@Nr0b2!0.88!6.56!Nr0b2;;chr1:39250584..39250643,+!p1@Npas2!0.87!34.40!Npas2;;chr10:20880629..20880683,-!p1@Myb!0.87!19.52!Myb;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.87!19.20!Tfcp2l1;;chr12:58646974..58647003,-!p1@Foxa1!0.86!8.64!Foxa1;;chr14:79915425..79915501,+!p1@Elf1!0.85!57.28!Elf1;;chr2:79296783..79296801,-!p1@Neurod1!0.85!6.08!Neurod1;;chr14:63890519..63890539,-!p3@Gata4!0.84!5.92!Gata4;;chr5:148081722..148081744,+!p2@Pdx1!0.84!5.92!Pdx1;;chr3:89197057..89197114,-!p1@Zbtb7b!0.82!20.32!Zbtb7b;;chr7:52960555..52960662,+!p1@Dbp!0.81!50.08!Dbp;;chr11:98636531..98636559,-!p1@Nr1d1!0.81!33.60!Nr1d1;;chr1:87497443..87497454,+!p3@Gm2427,p3@Sp140!0.81!5.44!Sp140;;chr11:96690797..96690813,-!p1@Nfe2l1!0.80!109.27!Nfe2l1;;chr8:87643578..87643593,-!p1@Zfp791!0.80!11.52!Zfp791;;chr17:28409136..28409150,+!p3@Ppard!0.79!5.12!Ppard;;chr7:20214704..20214800,-!p1@Relb!0.78!17.92!Relb;;chr19:55816546..55816556,+!p3@Tcf7l2!0.77!20.16!Tcf7l2;;chr3:135354384..135354443,-!p1@Nfkb1!0.76!32.16!Nfkb1;;chr7:31206743..31206761,+!p1@Nfkbid!0.76!6.72!Nfkbid;;chr3:90046995..90047031,-!p2@Creb3l4!0.76!6.08!Creb3l4;;chr2:103143315..103143328,-!p2@Ehf!0.76!4.80!Ehf;;chr5:148118809..148118832,-!p5@Cdx2!0.76!4.80!Cdx2;;chr11:98407264..98407295,-!p1@Ikzf3!0.76!4.80!Ikzf3;;chr12:36219283..36219298,-!p2@Ahr!0.76!4.80!Ahr;;chr19:6996243..6996293,-!p1@Esrra!0.75!56.64!Esrra;;chr1:194979383..194979393,+!p3@Irf6!0.74!4.48!Irf6;;chr12:86814833..86814846,+!p1@Fos!0.73!114.23!Fos;;chr1:138857048..138857071,-!p2@Nr5a2!0.73!4.32!Nr5a2;;chr8:72676653..72676668,+!p4@2310045N01Rik,p4@Mef2b!0.73!4.32!Mef2b;;chr11:98407234..98407259,-!p2@Ikzf3!0.73!4.32!Ikzf3;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.73!4.32!Ppard;;chr17:34784073..34784118,+!p2@Atf6b!0.72!19.04!Atf6b;;chr17:45692676..45692695,+!p2@Nfkbie!0.72!9.28!Nfkbie;;chr8:47825203..47825225,+!p3@Irf2!0.72!5.92!Irf2;;chr10:127095407..127095440,+!p3@Stat6!0.71!5.28!Stat6;;chr11:98614335..98614349,+!p8@Thra!0.71!4.16!Thra;;chr4:44723633..44723646,-!p3@Pax5!0.71!4.16!Pax5;;chr13:44825008..44825066,+!p5@Jarid2!0.70!8.48!Jarid2;;chr7:150155143..150155156,-!p1@Ascl2!0.70!4.00!Ascl2;;chrX:7339938..7339963,+!p1@Tfe3!0.69!22.08!Tfe3;;chr4:43575544..43575565,+!p2@Creb3!0.68!25.28!Creb3;;chr11:11586218..11586285,+!p1@Ikzf1!0.68!13.44!Ikzf1;;chr17:45692642..45692663,+!p1@Nfkbie!0.68!13.44!Nfkbie;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.68!5.60!Carhsp1;;chr11:100948597..100948637,+!p1@Mlx!0.67!101.76!Mlx;;chr7:20162663..20162678,+!p1@Zfp296!0.67!5.12!Zfp296;;chr4:148178459..148178482,+!p4@Casz1!0.67!3.68!Casz1;;chr11:98407370..98407395,-!p3@Ikzf3!0.67!3.68!Ikzf3;;chr3:94176733..94176794,+!p1@Rorc!0.66!31.68!Rorc;;chr15:35225845..35225867,+!p1@Osr2!0.66!10.08!Osr2;;chr18:11052606..11052633,+!p4@Gata6!0.66!10.08!Gata6;;chr11:96690779..96690790,-!p3@Nfe2l1!0.66!9.44!Nfe2l1;;chr10:61595830..61595846,+!p1@Neurog3!0.66!3.52!Neurog3;;chr11:83664365..83664383,+!p1@Hnf1b!0.66!3.52!Hnf1b;;chr8:77397169..77397182,+!p7@Isx!0.66!3.52!Isx;;chr4:44723520..44723544,-!p2@Pax5!0.66!3.52!Pax5;;chr2:75542527..75542590,-!p1@Nfe2l2!0.65!366.22!Nfe2l2;;chr8:87502608..87502623,-!p1@Junb!0.65!66.56!Junb;;chr5:76733981..76734018,-!p3@Clock!0.65!8.16!Clock;;chr16:55822241..55822258,-!p1@Nfkbiz!0.64!125.11!Nfkbiz;;chr11:16908650..16908690,-!p1@Plek!0.64!24.00!Plek;;chr14:79915502..79915514,+!p4@Elf1!0.64!5.44!Elf1;;chr6:37391910..37391928,-!p3@Creb3l2!0.64!3.84!Creb3l2;;chr8:125778192..125778217,+!p2@Zfp276!0.63!10.40!Zfp276;;chr1:52065508..52065522,+!p2@Stat4!0.63!4.00!Stat4;;chr9:31720843..31720888,-!p1@Barx2!0.63!3.68!Barx2;;chr8:79426176..79426275,+!p1@Nr3c2!0.62!18.72!Nr3c2;;chr18:11052485..11052508,+!p2@Gata6!0.62!10.08!Gata6;;chr18:64499879..64499895,+!p3@Onecut2!0.62!3.20!Onecut2;;chr19:6164433..6164446,+!p2@Batf2!0.62!3.20!Batf2;;chr14:63890545..63890560,-!p5@Gata4!0.62!3.20!Gata4;;chr2:90936901..90936945,+!p1@Sfpi1!0.61!18.88!Sfpi1;;chr4:87452180..87452196,-!p3@Mllt3!0.61!6.72!Mllt3;;chr6:39068163..39068176,-!p2@Parp12!0.61!6.40!Parp12;;chr2:180069423..180069434,-!p2@Gata5!0.61!3.04!Gata5;;chr19:10315179..10315241,-!p1@Gm98!0.60!37.92!Gm98;;chr18:36953486..36953503,+!p2@Zmat2!0.60!5.44!Zmat2;;chr10:80598209..80598236,+!p4@Zbtb7a!0.60!5.44!Zbtb7a;;chr2:91035254..91035271,-!p3@Nr1h3!0.60!3.84!Nr1h3;;chr8:73905344..73905381,-!p2@Nr2f6!0.59!8.00!Nr2f6;;chr8:47825166..47825178,+!p2@Irf2!0.59!4.96!Irf2;;chr1:189433521..189433548,+!p5@Esrrg!0.59!2.88!Esrrg;;chr2:147871627..147871641,-!p1@Foxa2!0.59!2.88!Foxa2;;chr19:53384910..53384937,+!p3@Mxi1!0.58!9.28!Mxi1;;chr2:173044380..173044432,-!p1@Zbp1!0.58!7.68!Zbp1;;chr11:98636508..98636524,-!p3@Nr1d1!0.58!3.68!Nr1d1;;chr11:98636373..98636387,-!p5@Nr1d1!0.58!3.36!Nr1d1;;chr18:11052642..11052659,+!p1@Gata6!0.57!16.64!Gata6;;chr15:85565338..85565355,+!p7@Ppara!0.57!2.72!Ppara;;chr2:166888058..166888105,-!p2@Znfx1!0.56!10.08!Znfx1;;chr19:53384985..53385042,+!p1@Mxi1!0.55!100.16!Mxi1;;chr5:120121020..120121049,+!p1@Tbx3!0.55!19.04!Tbx3;;chr4:124805092..124805135,-!p2@Zc3h12a!0.55!13.28!Zc3h12a;;chr18:36441119..36441158,+!p2@Pura!0.55!7.20!Pura;;chr2:173044357..173044377,-!p2@Zbp1!0.55!4.00!Zbp1;;chr14:99698164..99698208,+!p2@Klf5!0.55!3.04!Klf5;;chr19:5560570..5560582,-!p2@Ovol1!0.55!2.56!Ovol1;;chr7:31377960..31377973,-!p3@Zbtb32!0.55!2.56!Zbtb32;;chr5:148118614..148118625,-!p4@Cdx2!0.55!2.56!Cdx2;;chr2:180069640..180069660,-!p4@Gata5!0.55!2.56!Gata5;;chr11:5420655..5420659,+!p3@Xbp1!0.55!2.56!Xbp1;;chr11:96976641..96976646,-!p1@Tbx21!0.55!2.56!Tbx21;;chr3:128918394..128918413,+!p5@Pitx2!0.55!2.56!Pitx2;;chr3:30993974..30994045,+!p1@Skil!0.54!88.64!Skil;;chr13:31650185..31650201,+!p1@Foxq1!0.54!10.40!Foxq1;;chr15:37162796..37162828,+!p1@Grhl2!0.54!4.64!Grhl2;;chr7:29551488..29551529,-!p1@Nfkbib!0.53!98.88!Nfkbib;;chr19:46380172..46380231,+!p2@Nfkb2!0.53!20.64!Nfkb2;;chr4:148178529..148178548,+!p3@Casz1!0.53!6.72!Casz1;;chr6:108610513..108610528,+!p3@Bhlhe40!0.53!4.00!Bhlhe40;;chr15:85566014..85566045,+!p3@Ppara!0.53!3.52!Ppara;;chr15:85566051..85566080,+!p4@Ppara!0.53!2.88!Ppara;;chr1:52065530..52065548,+!p3@Stat4!0.53!2.40!Stat4;;chr6:108610610..108610676,+!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@@ Line 42: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011473
 |is_obsolete=
-|library_ids=CNhs13211
+|library_id=CNhs13211
+|library_id_phase_based=2:CNhs13211
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;10262
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;10262
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool2.CNhs13211.10262-104D1.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool2.CNhs13211.10262-104D1.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool2.CNhs13211.10262-104D1.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool2.CNhs13211.10262-104D1.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/Follicle%2520Associated%2520Epithelium%252c%2520pool2.CNhs13211.10262-104D1.mm9.nobarcode.rdna.fa.gz
 |name=Follicle Associated Epithelium, pool2
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13211,LSID1005,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.08861187503853,0,0,0,0,0,-0.132956596535471,0,0,0,0,-0.0843392403965415,0,0,0,0,0.0851275224634075,0,-0.127438198508897,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.117526825721029,0,0.387377688197341,0,0.120568945209029,-0.0196671359442816,-0.0696772384185772,-0.124045597905732,-0.24372921382419,-0.984211366477826,0.0223773595384384,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0777219901261542,0,-0.070412092846272,0,0,-0.00996555120716156,-0.163854873349597,-0.310650657339386,-0.158091042771083,-0.108460107080454,0,0,-0.128654325170946,-0.160159952012789,0,0,-0.0940533662946444,-0.0545788859761019,-0.0853840900093825,-0.0143764424662297,0,0,0,0,0,0.21483582178082,0.0215276148184642,0.0332811384457989,0.517636586276778,0,0,0,0,0
@@ Line 85: / Line 97: @@
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 |xref=
-}} {{DRAAccessionNumbers
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:10262-104D1;search_select_hide=table117:10262-104D1
-|DRA_sample_Accession=CAGE@DRS008784
-|accession_numbers=DRX008921;DRR009795;DRZ001220;DRZ002603;CAGE
-|library_id=CNhs13211
 }}

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FF:10262-104D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:57, 3 June 2020

CNhs13211

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0