FF:10781-110G7: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	somatostatinoma cell line:QGP-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11869
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	NA
sex	female
age	unknown
cell type	pancreatic delta cell
cell line	QGP-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005620

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11869		CAGE		DRX008011		DRR008883

Accession ID Hg19

Library id		BAM		CTSS
CNhs11869		DRZ000308		DRZ001693

Accession ID Hg38

Library id		BAM		CTSS
CNhs11869		DRZ011658		DRZ013043

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.145
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0919
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0548
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0383
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	1.107
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0161
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0188
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.493
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00891
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00894
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.203
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.168
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0.0919
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11869

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.49381e-5
MA0003.1	MA0003.1	0.268
MA0004.1	MA0004.1	0.135
MA0006.1	MA0006.1	0.579
MA0007.1	MA0007.1	0.497
MA0009.1	MA0009.1	0.842
MA0014.1	MA0014.1	0.774
MA0017.1	MA0017.1	0.0597
MA0018.2	MA0018.2	2.2367e-6
MA0019.1	MA0019.1	0.599
MA0024.1	MA0024.1	0.69
MA0025.1	MA0025.1	0.0336
MA0027.1	MA0027.1	0.581
MA0028.1	MA0028.1	0.016
MA0029.1	MA0029.1	0.406
MA0030.1	MA0030.1	2.47942e-4
MA0031.1	MA0031.1	0.0111
MA0035.2	MA0035.2	0.726
MA0038.1	MA0038.1	0.0313
MA0039.2	MA0039.2	0.534
MA0040.1	MA0040.1	0.525
MA0041.1	MA0041.1	0.0228
MA0042.1	MA0042.1	0.216
MA0043.1	MA0043.1	0.00409
MA0046.1	MA0046.1	0.253
MA0047.2	MA0047.2	8.79593e-4
MA0048.1	MA0048.1	0.225
MA0050.1	MA0050.1	3.91529e-9
MA0051.1	MA0051.1	1.89812e-5
MA0052.1	MA0052.1	0.369
MA0055.1	MA0055.1	0.276
MA0057.1	MA0057.1	0.274
MA0058.1	MA0058.1	0.15
MA0059.1	MA0059.1	0.904
MA0060.1	MA0060.1	5.88962e-5
MA0061.1	MA0061.1	0.00278
MA0062.2	MA0062.2	8.26194e-4
MA0065.2	MA0065.2	0.017
MA0066.1	MA0066.1	0.0497
MA0067.1	MA0067.1	0.869
MA0068.1	MA0068.1	0.399
MA0069.1	MA0069.1	0.301
MA0070.1	MA0070.1	0.0626
MA0071.1	MA0071.1	0.834
MA0072.1	MA0072.1	0.553
MA0073.1	MA0073.1	0.728
MA0074.1	MA0074.1	0.201
MA0076.1	MA0076.1	7.2779e-4
MA0077.1	MA0077.1	0.144
MA0078.1	MA0078.1	0.426
MA0079.2	MA0079.2	0.28
MA0080.2	MA0080.2	4.60793e-5
MA0081.1	MA0081.1	0.0236
MA0083.1	MA0083.1	0.388
MA0084.1	MA0084.1	0.644
MA0087.1	MA0087.1	0.517
MA0088.1	MA0088.1	0.493
MA0090.1	MA0090.1	0.00171
MA0091.1	MA0091.1	0.242
MA0092.1	MA0092.1	0.0356
MA0093.1	MA0093.1	0.0935
MA0099.2	MA0099.2	1.0969e-4
MA0100.1	MA0100.1	0.775
MA0101.1	MA0101.1	0.0119
MA0102.2	MA0102.2	0.707
MA0103.1	MA0103.1	9.91231e-6
MA0104.2	MA0104.2	0.558
MA0105.1	MA0105.1	6.31993e-5
MA0106.1	MA0106.1	0.656
MA0107.1	MA0107.1	0.00476
MA0108.2	MA0108.2	0.0305
MA0111.1	MA0111.1	0.662
MA0112.2	MA0112.2	7.84307e-4
MA0113.1	MA0113.1	0.0696
MA0114.1	MA0114.1	0.154
MA0115.1	MA0115.1	0.335
MA0116.1	MA0116.1	0.00137
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.0498
MA0122.1	MA0122.1	0.387
MA0124.1	MA0124.1	0.699
MA0125.1	MA0125.1	0.0152
MA0131.1	MA0131.1	0.313
MA0135.1	MA0135.1	0.844
MA0136.1	MA0136.1	0.1
MA0137.2	MA0137.2	0.0756
MA0138.2	MA0138.2	0.825
MA0139.1	MA0139.1	0.655
MA0140.1	MA0140.1	0.243
MA0141.1	MA0141.1	0.218
MA0142.1	MA0142.1	0.167
MA0143.1	MA0143.1	0.668
MA0144.1	MA0144.1	0.197
MA0145.1	MA0145.1	0.579
MA0146.1	MA0146.1	0.302
MA0147.1	MA0147.1	0.838
MA0148.1	MA0148.1	0.00401
MA0149.1	MA0149.1	0.193
MA0150.1	MA0150.1	0.508
MA0152.1	MA0152.1	0.356
MA0153.1	MA0153.1	0.743
MA0154.1	MA0154.1	0.00119
MA0155.1	MA0155.1	0.184
MA0156.1	MA0156.1	0.793
MA0157.1	MA0157.1	0.249
MA0159.1	MA0159.1	0.115
MA0160.1	MA0160.1	0.822
MA0162.1	MA0162.1	0.066
MA0163.1	MA0163.1	1.35779e-6
MA0164.1	MA0164.1	0.0635
MA0258.1	MA0258.1	0.00825
MA0259.1	MA0259.1	0.413

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11869

Novel motif	Logo	P-value
1	1	0.244
10	10	0.121
100	100	0.442
101	101	0.604
102	102	0.159
103	103	0.00841
104	104	0.467
105	105	0.948
106	106	0.131
107	107	0.271
108	108	0.408
109	109	0.0439
11	11	0.109
110	110	0.12
111	111	0.5
112	112	0.169
113	113	0.575
114	114	0.0544
115	115	0.825
116	116	0.436
117	117	0.0854
118	118	0.129
119	119	0.0957
12	12	0.585
120	120	0.551
121	121	0.0618
122	122	0.309
123	123	0.617
124	124	0.943
125	125	0.315
126	126	0.285
127	127	0.476
128	128	0.394
129	129	0.569
13	13	0.0732
130	130	0.553
131	131	0.586
132	132	0.757
133	133	0.99
134	134	0.801
135	135	0.0249
136	136	0.9
137	137	0.0161
138	138	0.866
139	139	0.923
14	14	0.568
140	140	0.896
141	141	0.381
142	142	0.337
143	143	0.0332
144	144	0.147
145	145	0.0446
146	146	0.506
147	147	0.492
148	148	0.0744
149	149	0.123
15	15	0.369
150	150	0.344
151	151	0.336
152	152	0.38
153	153	0.294
154	154	0.868
155	155	0.741
156	156	0.715
157	157	0.439
158	158	0.411
159	159	0.7
16	16	0.209
160	160	0.00483
161	161	0.0462
162	162	0.891
163	163	0.878
164	164	0.0777
165	165	0.219
166	166	0.0158
167	167	0.367
168	168	0.0187
169	169	0.0531
17	17	0.248
18	18	0.715
19	19	0.0742
2	2	0.699
20	20	0.915
21	21	0.0476
22	22	0.134
23	23	0.159
24	24	0.0646
25	25	0.493
26	26	0.271
27	27	0.396
28	28	0.608
29	29	0.14
3	3	0.0412
30	30	0.777
31	31	0.799
32	32	0.00576
33	33	0.15
34	34	0.135
35	35	0.196
36	36	0.099
37	37	0.0902
38	38	0.37
39	39	0.0409
4	4	0.849
40	40	0.0727
41	41	0.199
42	42	0.247
43	43	0.0728
44	44	0.494
45	45	0.69
46	46	0.32
47	47	0.283
48	48	0.232
49	49	0.149
5	5	0.324
50	50	0.401
51	51	0.4
52	52	0.588
53	53	0.433
54	54	0.782
55	55	0.752
56	56	0.87
57	57	0.524
58	58	0.365
59	59	0.0147
6	6	0.648
60	60	0.232
61	61	0.407
62	62	0.1
63	63	0.11
64	64	0.785
65	65	0.233
66	66	0.481
67	67	0.709
68	68	0.872
69	69	0.577
7	7	0.615
70	70	0.0255
71	71	0.0561
72	72	0.195
73	73	0.248
74	74	0.182
75	75	0.226
76	76	0.807
77	77	0.0536
78	78	0.432
79	79	0.0255
8	8	0.081
80	80	0.0349
81	81	0.127
82	82	0.0264
83	83	0.165
84	84	0.406
85	85	0.211
86	86	0.542
87	87	0.75
88	88	0.409
89	89	0.126
9	9	0.143
90	90	0.541
91	91	0.176
92	92	0.52
93	93	0.782
94	94	0.387
95	95	0.136
96	96	0.127
97	97	0.808
98	98	0.714
99	99	0.586

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11869

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000173 pancreatic D cell
DOID:4430 somatostatinoma
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000150 (glandular epithelial cell)
0000163 (endocrine cell)
0000167 (peptide hormone secreting cell)
0000164 (enteroendocrine cell)
0000502 (type D enteroendocrine cell)
0000172 (somatostatin secreting cell)
0000255 (eukaryotic cell)
0000173 (pancreatic D cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
4430 (somatostatinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002351 (progenitor cell of endocrine pancreas)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007904
+|DRA_sample_Accession=CAGE@SAMD00005620
+|accession_numbers=CAGE;DRX008011;DRR008883;DRZ000308;DRZ001693;DRZ011658;DRZ013043
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0000066,CL:0002371,CL:0000150,CL:0000163,CL:0000167,CL:0000164,CL:0000502,CL:0000172,CL:0000255,CL:0000173
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr18:55102628..55102646,+!p2@ONECUT2!2.41!255.00!ONECUT2;;chr12:103351444..103351461,+!p1@ASCL1!2.17!148.24!ASCL1;;chr18:55102598..55102623,+!p1@ONECUT2!2.14!136.22!ONECUT2;;chr11:34642612..34642646,+!p1@EHF!2.05!112.18!EHF;;chr1:214161272..214161322,+!p1@PROX1!1.92!113.12!PROX1;;chr20:20348740..20348757,+!p1@INSM1!1.75!54.91!INSM1;;chr17:46667594..46667619,-!p1@HOXB3!1.66!44.54!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!1.62!41.01!HOXB8;;chr1:201979743..201979762,+!p1@ELF3!1.62!41.01!ELF3;;chr7:156803329..156803362,-!p1@MNX1!1.53!32.99!MNX1;;chr1:201979703..201979721,+!p2@ELF3!1.52!32.29!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!1.52!32.05!HOXB9;;chr17:46671108..46671147,-!p1@HOXB5!1.51!31.11!HOXB5;;chr7:97840743..97840786,+!p1@BHLHA15!1.47!28.28!BHLHA15;;chr11:34645791..34645836,+!p3@EHF!1.46!27.57!EHF;;chr13:72441315..72441454,-!p1@DACH1!1.44!52.08!DACH1;;chr11:34642656..34642667,+!p2@EHF!1.44!26.40!EHF;;chr17:46675558..46675577,-!p2@HOXB6!1.43!26.16!HOXB6;;chr5:50679228..50679288,+!p1@ISL1!1.42!25.22!ISL1;;chr1:214161328..214161348,+!p2@PROX1!1.40!24.27!PROX1;;chr20:22564895..22564910,-!p1@FOXA2!1.39!23.57!FOXA2;;chr12:54380404..54380433,+!p3@HOXC10!1.39!23.33!HOXC10;;chr9:96717629..96717644,-!p1@BARX1!1.39!23.33!BARX1;;chr17:46682321..46682362,-!p1@HOXB6!1.37!22.62!HOXB6;;chr17:46703826..46703845,-!p3@HOXB9!1.37!22.39!HOXB9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.74!ZBED1;;chr17:46622229..46622257,-!p6@HOXB2!1.32!23.33!HOXB2;;chr10:135122906..135122921,+!p4@ZNF511!1.29!18.62!ZNF511;;chr2:157189180..157189290,-!p1@NR4A2!1.28!92.86!NR4A2;;chr17:46622440..46622477,-!p5@HOXB2!1.28!20.27!HOXB2;;chr15:57511609..57511651,+!p2@TCF12!1.27!29.46!TCF12;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.68!TFCP2L1;;chrX:131623044..131623089,-!p1@MBNL3!1.25!68.58!MBNL3;;chr2:73520667..73520683,-!p1@EGR4!1.25!16.97!EGR4;;chr16:52581025..52581072,-!p1@TOX3!1.25!16.97!TOX3;;chr12:54380036..54380091,+!p4@HOXC10!1.25!16.73!HOXC10;;chr20:51588873..51588953,+!p1@TSHZ2!1.24!21.68!TSHZ2;;chr14:38064429..38064486,-!p1@FOXA1!1.23!16.03!FOXA1;;chr17:46703212..46703238,-!p2@HOXB9!1.22!15.55!HOXB9;;chr1:151032782..151032801,+!p4@MLLT11!1.21!30.17!MLLT11;;chr17:46703528..46703549,-!p5@HOXB9!1.18!14.14!HOXB9;;chr18:55102806..55102847,+!p3@ONECUT2!1.18!14.14!ONECUT2;;chr17:46675420..46675465,-!p3@HOXB6!1.17!16.03!HOXB6;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.74!ZNF467;;chr17:46622205..46622218,-!p3@HOXB2!1.14!14.85!HOXB2;;chr6:10419768..10419819,-!p6@TFAP2A!1.14!12.96!TFAP2A;;chr16:52580953..52580992,-!p2@TOX3!1.14!12.73!TOX3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.73!SOX2;;chr2:242556880..242556899,-!p5@THAP4!1.13!12.49!THAP4;;chr10:135122868..135122893,+!p3@ZNF511!1.13!12.49!ZNF511;;chr20:42543441..42543497,+!p1@TOX2!1.12!54.44!TOX2;;chr17:46675469..46675481,-!p4@HOXB6!1.12!12.26!HOXB6;;chr8:60031762..60031803,-!p3@TOX!1.11!17.20!TOX;;chr6:28321909..28321965,-!p3@ZNF323!1.11!12.02!ZNF323;;chr20:22565370..22565388,-!p2@FOXA2!1.11!12.02!FOXA2;;chrX:30327504..30327509,-!p1@NR0B1!1.11!12.02!NR0B1;;chr5:137804405..137804444,+!p3@EGR1!1.10!13.90!EGR1;;chr2:8822176..8822196,+!p1@ID2!1.08!1537.79!ID2;;chr8:60031682..60031710,-!p2@TOX!1.08!18.15!TOX;;chr2:46524897..46524911,+!p2@EPAS1!1.07!30.17!EPAS1;;chr5:137801160..137801176,+!p1@EGR1!1.06!1037.21!EGR1;;chr1:214161358..214161377,+!p3@PROX1!1.06!10.37!PROX1;;chr15:61521417..61521460,-!p2@RORA!1.05!23.10!RORA;;chr1:40367530..40367597,-!p1@MYCL1!1.05!18.62!MYCL1;;chr15:80696703..80696754,+!p1@ARNT2!1.05!13.67!ARNT2;;chr8:53166899..53166914,-!p3@ST18!1.05!10.13!ST18;;chr20:50159198..50159299,-!p1@NFATC2!1.04!14.61!NFATC2;;chr16:54320101..54320125,-!p4@IRX3!1.04!14.14!IRX3;;chr1:8763440..8763460,-!p2@RERE!1.03!50.20!RERE;;chr2:239148671..239148686,-!p1@HES6!1.03!35.82!HES6;;chr6:10412600..10412637,-!p1@TFAP2A!1.03!16.50!TFAP2A;;chr8:102504651..102504683,+!p1@GRHL2!1.03!9.66!GRHL2;;chr17:46692624..46692659,-!p3@HOXB8!1.03!9.66!HOXB8;;chr1:209979467..209979494,-!p1@IRF6!1.01!10.37!IRF6;;chr17:46667628..46667642,-!p2@HOXB3!1.01!9.19!HOXB3;;chr12:103352277..103352324,+!p2@ASCL1!1.00!8.96!ASCL1;;chr8:60031619..60031676,-!p1@TOX!0.99!19.33!TOX;;chr1:151032142..151032195,+!p5@MLLT11!0.99!16.97!MLLT11;;chr17:46692287..46692317,-!p7@HOXB8!0.99!8.72!HOXB8;;chr17:46692318..46692362,-!p5@HOXB8!0.99!8.72!HOXB8;;chr2:45236540..45236577,-!p1@SIX2!0.99!8.72!SIX2;;chr8:60031809..60031835,-!p4@TOX!0.98!11.08!TOX;;chr3:181429741..181429767,+!p2@SOX2!0.98!8.48!SOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.62!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.94!12.02!HOXB2;;chr13:72441074..72441172,-!p2@DACH1!0.93!7.54!DACH1;;chr12:69753448..69753577,+!p1@YEATS4!0.92!151.78!YEATS4;;chr8:22550982..22550999,-!p1@EGR3!0.92!21.45!EGR3;;chr6:28321971..28321995,-!p1@ZNF323!0.92!7.31!ZNF323;;chr2:172967621..172967637,-!p1@DLX2!0.91!19.80!DLX2;;chr8:53162037..53162058,-!p5@ST18!0.91!7.07!ST18;;chr1:40367668..40367684,-!p2@MYCL1!0.91!7.07!MYCL1;;chr15:80696666..80696700,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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/somatostatinoma%2520cell%2520line%253aQGP-1.CNhs11869.10781-110G7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10781-110G7
 |is_a=CL:0000173;;DOID:4430;;EFO:0002091;;FF:0000003;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs11869
+|library_id=CNhs11869
+|library_id_phase_based=2:CNhs11869
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10781
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10781
 |name=somatostatinoma cell line:QGP-1
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11869,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 87: / Line 100: @@
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-}} {{DRAAccessionNumbers
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-|accession_numbers=DRX008011;DRR008883;DRZ000308;DRZ001693;CAGE
-|library_id=CNhs11869
 }}

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FF:10781-110G7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:04, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0