FFCP PHASE1:Hg19::chr1:156084552..156084561,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=4000 | |EntrezGene=4000 | ||
| Line 8: | Line 8: | ||
|UniProt=Q3BDU5 | |UniProt=Q3BDU5 | ||
|association_with_transcript=-30bp_to_ENST00000392355_5end | |association_with_transcript=-30bp_to_ENST00000392355_5end | ||
|cluster_id=chr1:156084552..156084561,+ | |||
|coexpression_cluster_id=C1839 | |coexpression_cluster_id=C1839 | ||
|description=CAGE_peak_3_at_LMNA_5end | |description=CAGE_peak_3_at_LMNA_5end | ||
Latest revision as of 14:58, 17 September 2015
| Short description: | p3@LMNA |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_LMNA_5end |
| Coexpression cluster: | C1839_Mast_immature_Fibroblast_Mesenchymal_Hair_tenocyte_Keratocytes |
| Association with transcript: | -30bp_to_ENST00000392355_5end |
| EntrezGene: | LMNA |
| HGNC: | 6636 |
| UniProt: | Q3BDU5 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@LMNA |
|---|
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150
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 2.69e-19 | 121 |
| fibroblast | 2.02e-15 | 76 |
| embryonic cell | 6.65e-15 | 250 |
| somatic stem cell | 1.38e-12 | 433 |
| muscle precursor cell | 1.46e-12 | 58 |
| myoblast | 1.46e-12 | 58 |
| multi-potent skeletal muscle stem cell | 1.46e-12 | 58 |
| multi fate stem cell | 4.59e-12 | 427 |
| muscle cell | 7.16e-12 | 55 |
| stem cell | 2.72e-11 | 441 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| mesoderm | 1.62e-17 | 315 |
| mesoderm-derived structure | 1.62e-17 | 315 |
| presumptive mesoderm | 1.62e-17 | 315 |
| epithelial vesicle | 5.99e-17 | 78 |
| multilaminar epithelium | 2.93e-16 | 83 |
| somite | 2.97e-15 | 71 |
| presomitic mesoderm | 2.97e-15 | 71 |
| presumptive segmental plate | 2.97e-15 | 71 |
| dermomyotome | 2.97e-15 | 71 |
| trunk paraxial mesoderm | 2.97e-15 | 71 |
Showing 1 to 10 of 46 entries
