FFCP PHASE1:Hg19::chr12:66218573..66218596,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:66218573..66218596,+ to FFCP PHASE1:Hg19::chr12:66218573..66218596,+: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8091 | |EntrezGene=8091 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5009 | |HGNC=5009 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000545998_5end | |||
|cluster_id=chr12:66218573..66218596,+ | |||
|coexpression_cluster_id=C749 | |||
|description=CAGE_peak_7_at_HMGA2_5end | |||
|id=chr12:66218573..66218596,+ | |||
|ontology_enrichment_celltype=CL:0002321!3.84e-25!248;CL:0000220!2.71e-24!246;CL:0000055!7.84e-24!180;CL:0000012!1.19e-19!682;CL:0000548!1.25e-19!679;CL:0000004!1.25e-19!679;CL:0000255!1.25e-19!679;CL:0000066!1.43e-16!254;CL:0002371!3.83e-15!591;CL:0000144!4.00e-14!625;CL:0000183!5.83e-12!59;CL:0000680!2.28e-11!57;CL:0000056!2.28e-11!57;CL:0000355!2.28e-11!57;CL:0002076!7.86e-11!43;CL:0000223!1.00e-10!59;CL:0000187!1.26e-10!54;CL:0000393!1.41e-10!60;CL:0000211!1.41e-10!60;CL:0000003!1.65e-10!722;CL:0000057!2.14e-09!75;CL:0000192!2.73e-08!42;CL:0000514!2.73e-08!42;CL:0000222!5.82e-08!119;CL:0000359!3.67e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.24e-08;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,4.94e-19,250;CL:0000066,9.61e-13,253;CL:0000223,4.27e-11,58;CL:0002076,6.80e-11,42;CL:0000680,5.77e-10,58;CL:0000056,5.77e-10,58;CL:0000355,5.77e-10,58;CL:0000187,3.62e-09,55;CL:0000393,8.83e-09,61;CL:0000211,8.83e-09,61;CL:0000057,1.71e-07,76;CL:0000192,3.16e-07,43;CL:0000514,3.16e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!9.74e-15!143;UBERON:0000914!7.72e-14!83;UBERON:0002329!7.72e-14!83;UBERON:0003077!7.72e-14!83;UBERON:0003059!7.72e-14!83;UBERON:0007282!7.72e-14!83;UBERON:0009618!7.72e-14!83;UBERON:0007285!7.72e-14!83;UBERON:0000486!5.25e-13!82;UBERON:0003104!5.47e-13!238;UBERON:0009142!5.47e-13!238;UBERON:0000481!9.90e-13!347;UBERON:0000475!3.40e-12!365;UBERON:0002100!5.60e-12!216;UBERON:0003102!1.10e-11!95;UBERON:0000490!2.59e-11!138;UBERON:0004290!4.62e-11!70;UBERON:0001444!5.19e-11!48;UBERON:0000119!7.87e-10!312;UBERON:0001134!2.67e-09!61;UBERON:0002036!2.67e-09!61;UBERON:0003082!2.67e-09!61;UBERON:0000483!4.96e-09!309;UBERON:0002049!6.03e-09!79;UBERON:0007798!6.03e-09!79;UBERON:0002385!1.15e-08!63;UBERON:0001015!1.15e-08!63;UBERON:0000383!1.15e-08!63;UBERON:0003914!2.25e-08!118;UBERON:0000468!1.10e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0001444;1.35e-09;48!UBERON:0000033;5.57e-08;50!UBERON:0003729;1.33e-07;13!UBERON:0010371;1.71e-07;31!UBERON:0000344;1.85e-07;20!UBERON:0000019;2.32e-07;19!UBERON:0000047;2.32e-07;19!UBERON:0004088;2.32e-07;19!UBERON:0010230;2.32e-07;19!UBERON:0001456;4.19e-07;21!UBERON:0007811;7.15e-07;52!UBERON:0000165;9.56e-07;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001444,1.89e-12,49;UBERON:0000033,5.18e-12,56;UBERON:0003104,8.54e-12,160;UBERON:0009142,8.54e-12,160;UBERON:0000486,3.68e-11,83;UBERON:0003102,4.04e-11,99;UBERON:0007503,2.56e-10,78;UBERON:0000490,6.15e-10,148;UBERON:0007524,8.26e-10,73;UBERON:0002329,8.54e-10,71;UBERON:0003059,8.54e-10,71;UBERON:0007282,8.54e-10,71;UBERON:0004290,8.54e-10,71;UBERON:0009618,8.54e-10,71;UBERON:0003077,1.98e-09,72;UBERON:0007285,1.98e-09,72;UBERON:0000153,2.44e-09,62;UBERON:0007811,2.44e-09,62;UBERON:0000119,4.30e-09,309;UBERON:0005256,1.20e-08,122;UBERON:0001134,2.16e-08,62;UBERON:0002036,2.16e-08,62;UBERON:0003082,2.16e-08,62;UBERON:0000483,2.85e-08,306;UBERON:0002385,1.06e-07,64;UBERON:0001015,1.06e-07,64;UBERON:0000383,1.06e-07,64;UBERON:0002100,1.15e-07,199;UBERON:0003729,1.56e-07,13;UBERON:0000344,2.21e-07,20;UBERON:0000165,3.69e-07,29;UBERON:0000930,3.69e-07,29;UBERON:0006876,8.33e-07,11;UBERON:0000019,9.84e-07,20;UBERON:0000047,9.84e-07,20;UBERON:0010312,9.84e-07,20;UBERON:0004088,9.84e-07,20;UBERON:0010230,9.84e-07,20;UBERON:0003072,9.84e-07,20;UBERON:0004128,9.84e-07,20;UBERON:0003071,9.84e-07,20 | |||
|phase1_expression=0.908391896352783,0,0.281908808191942,0,0,0.872338524100369,0,1.89515962028049,0,1.47440361900905,2.79120467188971,3.05817920982241,2.90143676051299,2.97039247104112,2.98257638155124,3.36162573225888,10.2458069764076,5.84248072309899,4.39139518911456,1.72369481307503,1.02000345622126,0.940364164434263,1.14494394852423,0.684372125364421,2.51085279189606,0.382067028739756,0.328402357799783,0.314843125254717,0,0,0,2.75826367343678,6.32532429434325,2.58827807116751,0,0,0.587200878669695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.895037932904712,1.0843174571537,0.50133791063589,0.289693037921647,1.5905718941022,2.91980922181582,8.98080763058645,7.76052891118974,9.04698292639198,0.0654895377488563,2.18577172975525,2.59549109949101,0,0,0,0,0,0,1.39133685156694,0.860234595106124,1.73570250803797,0,1.25849830862972,1.6507082516404,2.08994966536811,0.516833518338658,1.06729878806013,1.67360306382335,0.805658634218294,0,0.24406205754817,0.735326160691737,1.62028389576352,3.12549048994279,3.59246996201872,3.60356737546631,1.53316637465883,0.949265659568129,2.38162267109529,0,0,0.872188104285069,0.496971951695318,2.40597972162702,4.10468460520978,4.87622255272983,1.77334191099179,1.68203280042692,1.06748995729705,4.19334832309172,2.17847724779836,1.88594940897563,3.26923806226917,2.8757911252537,6.91411109375999,0.937285727335186,7.17968176709737,0.570471821544449,6.12739590262384,4.69737994575059,9.06488488461537,13.3428266367136,4.89970011011744,18.0566446448299,2.58314452939414,4.75201142912821,2.22540236350701,1.82032272387605,0.718618141816238,9.25848626747364,16.3905261032273,6.92660288710457,1.75591048352335,2.45190236639216,2.10333282469236,4.76415169272088,3.94657198515496,0.213557388818567,1.27159140695737,4.50136644126603,2.16410311400722,2.57640540045629,0.558350568994769,2.70042131586026,0.68205903612839,1.7670364197088,1.01254888506529,3.55621325001386,0.710019185033229,0.705264687593482,2.20428770003634,5.60456474173561,7.0913991353617,6.59650569394709,4.63500083292463,7.68672656264614,10.8060366868652,6.53064646596834,7.31730467539322,4.74470566798579,0,0.643240938192885,4.14404764057442,0.928735856063958,2.16563844500876,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0,0,0,0,0,1.32438929824395,4.5505722260952,8.0636870840307,3.73150970389327,3.37205259772859,4.32274581370013,14.9067396705233,2.93227474779292,2.07986957055916,0,6.14431146367907,5.63561732331944,0.577465791044295,0.925971025153221,0.570762456703795,0,0,0,0,0,0.93733833986777,3.86358894857377,4.53680311175637,2.86587272649115,2.61570544662566,1.91691339582606,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.925447434329912,0.300343057843917,0,8.29770024155669,3.92364061949952,15.4743783082205,4.00742318849111,0,3.381211010224,1.86156681609409,4.16029747645464,4.8869401109807,14.1849132023278,9.05835408654738,0.714889968290738,0.542621605391443,3.29296134712308,1.30294473717494,0.355391948742546,3.95975936466715,0.301439377059586,0.871533458600294,0.299918973546171,0,0,0,2.39624855491583,1.14861935834114,12.8373214536647,1.73737568001095,4.9314317412092,3.40215830155802,0,0,0,0,1.52456774533478,1.30139853857622,0,0.335032530668698,0.637938751653163,0,0,0,1.10422342547226,3.50119364741774,5.69656549769445,0.831883446123229,1.42743191037729,0.473107245101804,1.40569697991256,0.601892199455438,0,2.0694614258501,5.97803038681893,2.39679919104214,7.29822361531896,5.48243240895674,4.80400793335198,0,0,0,0,3.32870879020994,2.72151263996712,0.496215615637554,0.153461973288062,0,0.768834895534206,0,0.160853921143607,0,6.16838775210622,2.30830242907065,4.76337504880093,5.71179872101983,3.25389059687886,4.71351853407327,4.61164881697555,2.20994373446151,0.459257792658427,5.28064387219479,1.18011973463482,4.06079651616671,10.8591625317225,1.56869953835371,2.92278449306521,14.9883313027883,0,2.2112181685947,7.1252252313706,0,3.79325012561394,2.00675909541941,1.52925763827023,1.66215201785745,7.61174166055406,0.657779629937804,0.261435451024901,6.41125312790973,3.60816110269676,4.55529752530024,0,0.457847324091717,0.495056999523528,5.74265537996172,5.20048196829217,0,4.54352375972973,3.38906957652218,3.07007349452259,10.3377429363398,4.18938954986267,3.91545073568417,7.67039646744908,1.78064071293475,2.47927373041467,4.42037154939744,13.7821729494151,2.4277867405332,4.64845549297286,4.7221852024596,4.1822236209636,2.15623506123262,3.19383618190213,0.869932992075073,2.40921484835096,3.14874750832381,7.07100901783368,4.74569137078089,2.47819252100972,2.55897791311334,4.2793898803392,3.18203247925937,0.78494864019923,1.61885211824983,2.74537029736055,5.06593330086452,1.41527737101321,0,2.52755073743389,0.48763373908959,4.87426979262569,1.05650146756755,1.09199929126389,0.707027159768564,1.13008116620243,0.551365343546124,0.66343897524122,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| ||
|short_description=p7@HMGA2 | |||
}} | }} |
Latest revision as of 23:26, 19 September 2015
Short description: | p7@HMGA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_HMGA2_5end |
Coexpression cluster: | C749_Wilms_rhabdomyosarcoma_medulloblastoma_fibrous_retinoblastoma_endometrial_schwannoma |
Association with transcript: | 0bp_to_ENST00000545998_5end |
EntrezGene: | HMGA2 |
HGNC: | 5009 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 4.94e-19 | 250 |
epithelial cell | 9.61e-13 | 253 |
endodermal cell | 4.27e-11 | 58 |
endo-epithelial cell | 6.80e-11 | 42 |
muscle precursor cell | 5.77e-10 | 58 |
myoblast | 5.77e-10 | 58 |
multi-potent skeletal muscle stem cell | 5.77e-10 | 58 |
muscle cell | 3.62e-09 | 55 |
electrically responsive cell | 8.83e-09 | 61 |
electrically active cell | 8.83e-09 | 61 |
fibroblast | 1.71e-07 | 76 |
smooth muscle cell | 3.16e-07 | 43 |
smooth muscle myoblast | 3.16e-07 | 43 |