FFCP PHASE1:Hg19::chr14:54423533..54423552,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:54423533..54423552,- to FFCP PHASE1:Hg19::chr14:54423533..54423552,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=652 | |EntrezGene=652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |HGNC=1071 | ||
|TSSclassifier=strong | |||
|UniProt=P12644,Q53XC5 | |UniProt=P12644,Q53XC5 | ||
|association_with_transcript=1bp_to_NM_001202,NM_130850,uc001xan.3,uc001xao.3_5end | |||
|cluster_id=chr14:54423533..54423552,- | |||
|coexpression_cluster_id=C3433 | |||
|description=CAGE_peak_1_at_BMP4_5end | |||
|id=chr14:54423533..54423552,- | |||
|ontology_enrichment_celltype=CL:0000213!1.27e-16!57;CL:0000215!1.27e-16!57;CL:0002078!1.03e-12!44;CL:0000222!2.16e-10!119;CL:0000115!7.04e-10!35;CL:0002139!1.26e-09!24;CL:0000071!1.68e-07!18;CL:0002546!1.68e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.75e-10;24!CL:0000213;3.63e-10;58!CL:0000215;3.63e-10;58!CL:0000115;1.46e-09;36!CL:0002078;8.48e-09;45!CL:1000413;6.49e-08;9!CL:0000071;1.08e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000213,6.78e-18,58;CL:0000215,6.78e-18,58;CL:0002078,7.86e-13,45;CL:0000115,1.15e-10,36;CL:0002139,1.36e-10,24;CL:0000222,4.41e-10,121;CL:1000413,5.25e-08,9;CL:0000071,9.63e-08,18;CL:0002546,9.63e-08,18;CL:0000066,4.13e-07,253;CL:0002321,4.24e-07,250 | |||
|ontology_enrichment_development_v019=CL:0002546;1.08e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!9.07e-17!286;UBERON:0004111!5.50e-16!241;UBERON:0000481!9.07e-14!347;UBERON:0000119!2.00e-13!312;UBERON:0000483!3.36e-13!309;UBERON:0003914!1.26e-11!118;UBERON:0000025!2.94e-11!194;UBERON:0006914!1.09e-10!25;UBERON:0001007!7.20e-10!155;UBERON:0001555!7.20e-10!155;UBERON:0007026!7.20e-10!155;UBERON:0004921!2.29e-09!129;UBERON:0004185!2.29e-09!129;UBERON:0000487!3.80e-09!22;UBERON:0004119!3.55e-08!169;UBERON:0000925!3.55e-08!169;UBERON:0006595!3.55e-08!169;UBERON:0000490!1.06e-07!138;UBERON:0003104!1.12e-07!238;UBERON:0009142!1.12e-07!238;UBERON:0000077!1.21e-07!130;UBERON:0001986!1.68e-07!18;UBERON:0004638!1.68e-07!18;UBERON:0004852!1.68e-07!18;UBERON:0000466!2.67e-07!126;UBERON:0002100!3.15e-07!216;UBERON:0002049!3.76e-07!79;UBERON:0007798!3.76e-07!79;UBERON:0003064!8.47e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;8.61e-15;22!UBERON:0006914;2.98e-11;25!UBERON:0000160;1.12e-10;17!UBERON:0004921;1.15e-09;33!UBERON:0000487;3.17e-09;22!UBERON:0000490;6.30e-08;33!UBERON:0003915;6.49e-08;9!UBERON:0004700;6.49e-08;9!UBERON:0001917;6.49e-08;9!UBERON:0004638;1.08e-07;18!UBERON:0001986;1.08e-07;18!UBERON:0004852;1.08e-07;18!UBERON:0000059;1.25e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.95e-13,25;UBERON:0004921,1.55e-12,118;UBERON:0001007,5.16e-12,145;UBERON:0001555,5.16e-12,145;UBERON:0007026,5.16e-12,145;UBERON:0006914,2.93e-11,25;UBERON:0000160,1.34e-10,17;UBERON:0004119,1.96e-10,160;UBERON:0000925,1.96e-10,160;UBERON:0006595,1.96e-10,160;UBERON:0003914,2.24e-09,117;UBERON:0000487,2.93e-09,22;UBERON:0003064,2.59e-08,28;UBERON:0003915,5.25e-08,9;UBERON:0004700,5.25e-08,9;UBERON:0001917,5.25e-08,9;UBERON:0004638,9.63e-08,18;UBERON:0001986,9.63e-08,18;UBERON:0004852,9.63e-08,18;UBERON:0000059,1.26e-07,11;UBERON:0001048,1.75e-07,160;UBERON:0000490,3.52e-07,148;UBERON:0002049,4.71e-07,78;UBERON:0007798,4.71e-07,78;UBERON:0000483,4.85e-07,306;UBERON:0000119,5.42e-07,309;UBERON:0005911,6.37e-07,82;UBERON:0003929,6.85e-07,54;UBERON:0001046,9.83e-07,19 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.986680828671798,1.0007329835313,0,4.36169262050184,0,0,0.522371256399677,0.491467873003018,2.79120467188971,0,0,0,0.662794751455832,0,0,0,0,3.20114750999649,16.932057373273,11.2843699732112,0.286235987131057,0.821246550437305,1.75759695432724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,5.4980901592718,7.59022220007589,6.51739283826656,18.105814870103,0.795285947051099,2.91980922181582,0.661743720148475,4.21285855178871,4.91874799881506,0.785874452986276,0,0,0,0,0,0,0,0,4.96906018416763,4.30117297553062,10.0670745466202,2.82653970962005,9.22898759661793,17.8826727261044,11.2857281929878,3.35941786920128,2.49036383880697,4.68608857870538,0.402829317109147,0,0.488124115096339,1.47065232138347,17.012980905517,6.07238152331742,2.69435247151404,8.22063807528252,7.66583187329416,0.949265659568129,3.29763139074733,0,0,0.436094052142534,0,1.01304409331664,0.132409180813219,2.0078563452417,1.06400514659507,11.2135520028461,0,6.166688710429,2.8008993185979,0.538842688278752,0.653847612453835,5.60022482286246,2.88087962239999,0.70296429550139,0,0.570471821544449,0,0.23486899728753,0,0.421352420106746,0,0.61417158655884,0,5.94001428641027,5.93440630268536,0,0.718618141816238,1.17835279767846,0.750711119231785,0,2.63386572528503,3.98434134538726,4.95785594391769,1.58805056424029,0,0,0,0,0,0,0.558350568994769,0,0,0,0,4.36444353410792,0,0,0.169560592310488,0.193260853163297,0,0,2.92736894711029,3.04818467139416,6.73924868643207,6.21966330092223,3.02785021050754,0.72995471815166,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,7.8199062152966,1.47008711385542,0,0,0,7.50487269004906,10.5770057147078,4.80389868835872,0,0,0.502644862058154,0.0925884451585296,0.325808305310325,0,1.44331342025273,0.115930404975077,5.51820862908362,3.89789408954899,1.38895653772983,2.66355813128438,1.58040879591855,1.71697232418975,0,0,0,0,0.335964256397719,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.12624243342638,0.571481048629521,1.90994212779139,1.17217447210047,0,1.43958489784653,0,0,0.224262168690721,1.30788020649984,0.1466765716419,1.68053230485111,0,0,0.26593811658487,0,0,0,0,5.29018576535146,0.542621605391443,3.29296134712308,0,8.5294067698211,0,4.52159065589379,3.48613383440118,7.49797433865428,0,0,0,0.479249710983165,0,0,0.289562613335158,1.02738161275192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0,0,0,0,0.234282829985426,0,0,0,0,2.76553752812555,0.781952530212746,0.195801157462741,0.343143423810856,0,0,0,0.606255142892519,0,0.907170879989041,0.248107807818777,0,0,0,0,0.321707842287215,0,0.154209693802656,0.355123450626254,0.164254312027618,1.03850885836724,0.232420756919918,13.1736800054868,0,0.276242966807689,19.862899532477,5.64482620820823,28.7162468761139,0.451199612907412,0.0770153371044148,0,0,0,6.8240030442538,0.510281115829547,3.02282282542995,16.9649977959318,4.6060894382455,4.51520796469368,0.254876273045038,0.831076008928724,0.223874754722178,0,0,29.2353142632684,32.4734499242709,3.57916234130733,4.84292754744295,54.4838315669143,51.8159659501293,0,0,8.03419649220798,0.096670718292122,0,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,1.06461206063404,0,0,0.143124886741991,0,1.89827654831236,0.953150969619124,2.04718233049067,2.1396949401696,0,0,10.7923474549989,10.157870100234,5.89062011728432,0.606547444719948,0,0,8.77740730361263,0.974853958525138,0,14.1959907864305,5.23200098228737,2.26016233240486,0,0,1.75380354101505,0,0.655894752046633,0.608731130888112,0.6196469961995,0.281695602532241,1.14729081763241,2.55447506634115,0.35667105148125,0,10.7664894001809,4.28083360847872,1.13841952129715,1.04980416073495,0.0962221127255121,0,0,4.23647103495506,0,0,0,0,0,0,0,0,0,0,0,0,35.2519434720661,0,0.735120647943095,0,0,0,0.637705090915289,0,0,0,0.324621940274555,0,0,0,0,0.169291777801603,0,0,0.425846237690326,0,0.614481528616916,0.671028323677248,0.500547425135725,0,0,0,0,0,0,3.18138918693974,1.31857361344705,0,0,25.5722532125772,0.23874448473769,0,0,0,0.140669416410513,0,0,1.26675244876796,3.58646378851925,2.76283915531148,0,0,0,0,12.4917008094784,0.895105873378046,0,3.15658898038188,0,0,0,0.371072392647405,0,0.260427761085233,10.0578999995625,2.17499872630438,0.682760689712998,5.59358030644086,0,0,0,0.173624994933292,0,0.241192877250816,0,3.09621927807429,0.295547618953547,1.53569778007781,0,2.09135616417905,2.77020930613669,18.0028448238262,2.76676685265672,0,0.217294743844016,0.31900115973192,4.57987967009312,0,0,0,0,0,0,0,0,0,0,0.489698424477443,21.6270199293929,0,6.96683351754953,2.21143911258348,3.05515072466813,0,0,0,0.539209063845416,3.21031058919516,0,0,0,0,0.789168805698781,2.41981432097328,0.30607276163049,1.26373159256976,0,0.414752765588989,0,0,0,0,0,0,0.173559738335131,0,0.69647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| 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| ||
|short_description=p1@BMP4 | |||
}} | }} |
Latest revision as of 07:38, 20 September 2015
Short description: | p1@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BMP4_5end |
Coexpression cluster: | C3433_teratocarcinoma_Saos2_signet_rectal_tubular_gastric_Wilms |
Association with transcript: | 1bp_to_NM_001202, NM_130850, uc001xan.3, uc001xao.3_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | P12644Q53XC5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lining cell | 6.78e-18 | 58 |
barrier cell | 6.78e-18 | 58 |
meso-epithelial cell | 7.86e-13 | 45 |
endothelial cell | 1.15e-10 | 36 |
endothelial cell of vascular tree | 1.36e-10 | 24 |
mesodermal cell | 4.41e-10 | 121 |
endothelial cell of artery | 5.25e-08 | 9 |
blood vessel endothelial cell | 9.63e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.63e-08 | 18 |
epithelial cell | 4.13e-07 | 253 |
embryonic cell | 4.24e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.95e-13 | 25 |
subdivision of digestive tract | 1.55e-12 | 118 |
digestive system | 5.16e-12 | 145 |
digestive tract | 5.16e-12 | 145 |
primitive gut | 5.16e-12 | 145 |
squamous epithelium | 2.93e-11 | 25 |
intestine | 1.34e-10 | 17 |
endoderm-derived structure | 1.96e-10 | 160 |
endoderm | 1.96e-10 | 160 |
presumptive endoderm | 1.96e-10 | 160 |
epithelial tube | 2.24e-09 | 117 |
simple squamous epithelium | 2.93e-09 | 22 |
intermediate mesoderm | 2.59e-08 | 28 |
endothelial tube | 5.25e-08 | 9 |
arterial system endothelium | 5.25e-08 | 9 |
endothelium of artery | 5.25e-08 | 9 |
blood vessel endothelium | 9.63e-08 | 18 |
endothelium | 9.63e-08 | 18 |
cardiovascular system endothelium | 9.63e-08 | 18 |
large intestine | 1.26e-07 | 11 |
primordium | 1.75e-07 | 160 |
unilaminar epithelium | 3.52e-07 | 148 |
vasculature | 4.71e-07 | 78 |
vascular system | 4.71e-07 | 78 |
epithelium | 4.85e-07 | 306 |
cell layer | 5.42e-07 | 309 |
endo-epithelium | 6.37e-07 | 82 |
gut epithelium | 6.85e-07 | 54 |
hindgut | 9.83e-07 | 19 |