FFCP PHASE1:Hg19::chr16:57394343..57394366,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:57394343..57394366,+ to FFCP PHASE1:Hg19::chr16:57394343..57394366,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr16:57394343..57394366,+ | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_at_chr16:57394343..57394366,+ | |||
|id=chr16:57394343..57394366,+ | |||
|ontology_enrichment_celltype=CL:0000990!3.74e-30!8;CL:0000451!1.67e-24!10;CL:0000738!1.33e-18!140;CL:0000453!1.47e-18!5;CL:0000945!2.15e-16!24;CL:0000826!2.15e-16!24;CL:0002031!5.77e-16!124;CL:0000840!2.50e-15!5;CL:0001029!2.50e-15!5;CL:0002087!4.53e-15!119;CL:0002032!5.59e-15!165;CL:0000837!5.59e-15!165;CL:0000037!3.75e-14!172;CL:0000566!3.75e-14!172;CL:0000235!1.83e-13!10;CL:0000988!4.41e-13!182;CL:0000785!5.16e-11!2;CL:0000955!5.16e-11!2;CL:0000818!5.16e-11!2;CL:0000954!5.16e-11!2;CL:0000816!5.16e-11!2;CL:0000838!2.81e-10!52;CL:0000542!4.81e-10!53;CL:0000051!4.81e-10!53;CL:0002009!7.29e-08!65;CL:0000817!1.25e-07!3;CL:0000557!4.88e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0000990;5.30e-55;8!CL:0000451;6.49e-45;10!CL:0000453;3.13e-33;5!CL:0000840;1.91e-27;5!CL:0000235;9.88e-27;6!CL:0000945;2.43e-14;24!CL:0000738;3.21e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000990,5.30e-55,8;CL:0000451,6.49e-45,10;CL:0000453,3.26e-33,5;CL:0000840,1.91e-27,5;CL:0001029,1.91e-27,5;CL:0000235,1.09e-26,6;CL:0000738,9.71e-24,136;CL:0002032,1.12e-19,161;CL:0000837,1.12e-19,161;CL:0000037,9.37e-19,168;CL:0002031,1.32e-18,120;CL:0000988,1.13e-17,177;CL:0002087,6.12e-17,115;CL:0000945,2.45e-14,24;CL:0000826,2.45e-14,24;CL:0000838,3.76e-11,52;CL:0000542,6.35e-11,53;CL:0000051,6.35e-11,53;CL:0000763,1.33e-09,108;CL:0000049,1.33e-09,108;CL:0002009,1.95e-09,61;CL:0000557,1.62e-08,67;CL:0002194,1.62e-07,59;CL:0000576,1.62e-07,59;CL:0000040,1.62e-07,59;CL:0000559,1.62e-07,59;CL:0000134,1.78e-07,354;CL:0002320,2.83e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0060058!6.34e-13!10;DOID:630!9.48e-07!1;DOID:0050177!9.48e-07!1;DOID:0050427!9.48e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:630;4.01e-11;1!DOID:0050177;4.01e-11;1!DOID:0050427;4.01e-11;1!DOID:0060060;5.16e-11;1!DOID:0060061;5.16e-11;1!DOID:8691;5.16e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,4.01e-11,1;DOID:0050177,4.01e-11,1;DOID:0050427,4.01e-11,1;DOID:0060060,4.44e-11,1;DOID:0060061,4.44e-11,1;DOID:8691,4.44e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0004177!8.14e-12!7;UBERON:0002390!1.86e-08!102;UBERON:0003061!1.86e-08!102;UBERON:0002106!1.06e-07!3;UBERON:0004854!1.06e-07!3;UBERON:0009034!1.06e-07!3;UBERON:0002095!1.06e-07!3;UBERON:0004782!1.06e-07!3;UBERON:0003281!1.06e-07!3;UBERON:0009664!1.06e-07!3;UBERON:0002296!1.06e-07!3;UBERON:0005602!1.06e-07!3;UBERON:0001179!1.06e-07!3;UBERON:0006293!1.06e-07!3;UBERON:0002193!1.93e-07!112;UBERON:0002405!3.59e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.09e-07,76;UBERON:0002384,5.33e-07,371;UBERON:0001474,8.43e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.89708369314551,4.10502947249729,3.14843125254717,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2537275017701,27.1642390186857,25.7938443406598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72214074959484,5.05345951781676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,3.69254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46908502274835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4220497453196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94868157409433,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.9099375186865,28.8316703479998,88.8160090809234,0,0,0.211312123358627,1.9998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.399764623699716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516711278688049,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.603821380773079,2.56454793842586 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.89708369314551,4.10502947249729,3.14843125254717,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2537275017701,27.1642390186857,25.7938443406598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.72214074959484,5.05345951781676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,3.69254416383208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46908502274835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.4220497453196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94868157409433,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,48.9099375186865,28.8316703479998,88.8160090809234,0,0,0.211312123358627,1.9998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0939839179798536,0,0.399764623699716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516711278688049,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.603821380773079,2.56454793842586 | ||
|short_description=p@chr16:57394343..57394366,+ | |||
}} | }} |
Latest revision as of 10:31, 25 July 2015
Short description: | p@chr16:57394343..57394366, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:57394343..57394366, + |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
conventional dendritic cell | 5.30e-55 | 8 |
dendritic cell | 6.49e-45 | 10 |
Langerhans cell | 3.26e-33 | 5 |
immature conventional dendritic cell | 1.91e-27 | 5 |
common dendritic progenitor | 1.91e-27 | 5 |
macrophage | 1.09e-26 | 6 |
leukocyte | 9.71e-24 | 136 |
hematopoietic oligopotent progenitor cell | 1.12e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.12e-19 | 161 |
hematopoietic stem cell | 9.37e-19 | 168 |
hematopoietic lineage restricted progenitor cell | 1.32e-18 | 120 |
hematopoietic cell | 1.13e-17 | 177 |
nongranular leukocyte | 6.12e-17 | 115 |
lymphocyte of B lineage | 2.45e-14 | 24 |
pro-B cell | 2.45e-14 | 24 |
lymphoid lineage restricted progenitor cell | 3.76e-11 | 52 |
lymphocyte | 6.35e-11 | 53 |
common lymphoid progenitor | 6.35e-11 | 53 |
myeloid cell | 1.33e-09 | 108 |
common myeloid progenitor | 1.33e-09 | 108 |
macrophage dendritic cell progenitor | 1.95e-09 | 61 |
granulocyte monocyte progenitor cell | 1.62e-08 | 67 |
monopoietic cell | 1.62e-07 | 59 |
monocyte | 1.62e-07 | 59 |
monoblast | 1.62e-07 | 59 |
promonocyte | 1.62e-07 | 59 |
mesenchymal cell | 1.78e-07 | 354 |
connective tissue cell | 2.83e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.09e-07 | 76 |
connective tissue | 5.33e-07 | 371 |
bone element | 8.43e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 4.01e-11 | 1 |
monogenic disease | 4.01e-11 | 1 |
xeroderma pigmentosum | 4.01e-11 | 1 |
non-Hodgkin lymphoma | 4.44e-11 | 1 |
cutaneous T cell lymphoma | 4.44e-11 | 1 |
mycosis fungoides | 4.44e-11 | 1 |