FFCP PHASE1:Hg19::chr17:72428301..72428329,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:72428301..72428329,+ to FFCP PHASE1:Hg19::chr17:72428301..72428329,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:72428301..72428329,+ | |||
|coexpression_cluster_id=C2434 | |||
|description=CAGE_peak_at_chr17:72428301..72428329,+ | |||
|id=chr17:72428301..72428329,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.58e-33!254;CL:0000223!6.08e-18!59;CL:0002076!3.23e-13!43;CL:1000497!1.10e-08!18;CL:0002518!1.10e-08!18;CL:1000449!5.95e-08!16;CL:0002251!3.79e-07!21;CL:1000507!4.20e-07!12;CL:1000494!4.20e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000497;2.63e-14;17!CL:0002518;2.63e-14;17!CL:1000507;2.74e-13;10!CL:1000494;2.74e-13;10!CL:1000449;3.67e-13;15!CL:0002076;3.33e-10;42!CL:0002681;6.52e-10;12!CL:0002584;6.52e-10;12!CL:0000182;1.49e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.57e-29,253;CL:0000223,3.95e-19,58;CL:1000497,2.72e-14,17;CL:0002518,2.72e-14,17;CL:1000507,2.38e-13,10;CL:1000494,2.38e-13,10;CL:0002076,2.69e-13,42;CL:1000449,3.15e-13,15;CL:0002681,5.83e-10,12;CL:0002584,5.83e-10,12;CL:0000182,2.54e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000223;7.05e-12;58!UBERON:0001041;5.48e-09;30!UBERON:0009497;6.36e-09;13!UBERON:0004161;9.34e-08;11!UBERON:0003104;1.65e-07;31 | |||
|ontology_enrichment_disease=DOID:305!1.19e-23!106;DOID:0050687!2.12e-16!143;DOID:162!3.94e-10!235;DOID:299!1.57e-09!25;DOID:14566!3.06e-09!239 | |||
|ontology_enrichment_disease_v019=DOID:299;1.72e-11;25!DOID:305;1.16e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.04e-18,106;DOID:0050687,5.26e-12,143;DOID:299,1.53e-11,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.09e-27!169;UBERON:0000925!1.09e-27!169;UBERON:0006595!1.09e-27!169;UBERON:0001007!5.32e-23!155;UBERON:0001555!5.32e-23!155;UBERON:0007026!5.32e-23!155;UBERON:0004921!3.89e-22!129;UBERON:0004185!3.89e-22!129;UBERON:0000466!3.31e-21!126;UBERON:0000077!1.40e-19!130;UBERON:0001041!1.57e-17!98;UBERON:0005177!1.73e-16!107;UBERON:0000464!5.92e-16!104;UBERON:0005911!2.04e-14!82;UBERON:0005172!2.61e-13!55;UBERON:0005173!2.61e-13!55;UBERON:0009569!3.95e-13!113;UBERON:0001048!5.46e-13!168;UBERON:0001004!1.76e-12!72;UBERON:0001008!3.97e-12!45;UBERON:0006554!6.77e-12!44;UBERON:0002553!1.71e-11!70;UBERON:0000062!2.02e-11!511;UBERON:0000058!4.76e-11!26;UBERON:0002417!6.25e-11!61;UBERON:0000916!6.25e-11!61;UBERON:0003104!1.71e-10!238;UBERON:0009142!1.71e-10!238;UBERON:0000481!3.49e-10!347;UBERON:0002113!1.10e-09!27;UBERON:0003918!1.10e-09!27;UBERON:0005095!1.10e-09!27;UBERON:0007687!1.10e-09!27;UBERON:0003887!2.31e-09!21;UBERON:0003886!7.16e-09!63;UBERON:0000065!7.70e-09!53;UBERON:0000080!9.51e-09!18;UBERON:0002120!9.51e-09!18;UBERON:0004875!9.51e-09!18;UBERON:0005721!9.51e-09!18;UBERON:0005754!9.51e-09!18;UBERON:0007297!9.51e-09!18;UBERON:0003929!1.07e-08!54;UBERON:0006555!2.07e-08!17;UBERON:0005103!2.07e-08!17;UBERON:0000083!2.07e-08!17;UBERON:0009201!2.07e-08!17;UBERON:0004819!2.07e-08!17;UBERON:0006553!2.07e-08!17;UBERON:0003074!2.07e-08!17;UBERON:0003060!2.07e-08!17;UBERON:0004876!3.10e-08!20;UBERON:0000489!4.98e-08!32;UBERON:0005156!5.56e-08!59;UBERON:0000990!5.56e-08!59;UBERON:0002365!5.79e-08!31;UBERON:0002330!5.79e-08!31;UBERON:0004211!5.95e-08!16;UBERON:0001285!5.95e-08!16;UBERON:0007684!5.95e-08!16;UBERON:0003220!5.95e-08!16;UBERON:0004208!5.95e-08!16;UBERON:0008947!9.06e-08!38;UBERON:0003258!9.06e-08!38;UBERON:0009856!1.34e-07!26;UBERON:0003133!1.88e-07!48;UBERON:0007499!2.09e-07!25;UBERON:0000922!2.17e-07!612;UBERON:0009497!2.22e-07!25;UBERON:0000015!2.22e-07!25;UBERON:0002423!2.22e-07!25;UBERON:0006235!2.22e-07!25;UBERON:0004161!2.22e-07!25;UBERON:0009773!4.20e-07!12;UBERON:0001231!4.20e-07!12;UBERON:0004810!4.20e-07!12;UBERON:0003064!5.40e-07!37;UBERON:0002530!5.84e-07!59;UBERON:0005409!8.96e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;8.73e-17;30!UBERON:0001008;8.73e-17;30!UBERON:0002113;5.20e-15;24!UBERON:0011143;5.20e-15;24!UBERON:0004211;2.74e-13;10!UBERON:0009773;2.74e-13;10!UBERON:0001231;2.74e-13;10!UBERON:0004810;2.74e-13;10!UBERON:0006555;3.67e-13;15!UBERON:0004819;3.67e-13;15!UBERON:0001285;3.67e-13;15!UBERON:0007684;3.67e-13;15!UBERON:0005172;4.65e-12;52!UBERON:0005173;4.65e-12;52!UBERON:0000489;2.56e-11;29!UBERON:0002423;5.70e-10;25!UBERON:0001225;6.52e-10;12!UBERON:0008987;6.52e-10;12!UBERON:0002365;1.99e-09;31!UBERON:0002330;1.99e-09;31!UBERON:0002417;1.81e-08;58!UBERON:0000916;1.81e-08;58!UBERON:0001041;7.38e-08;14!UBERON:0004921;1.45e-07;33!UBERON:0005177;1.82e-07;99!UBERON:0001851;2.44e-07;15!UBERON:0000353;2.44e-07;15!UBERON:0002107;3.83e-07;19!UBERON:0006925;3.83e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.06e-19,47;UBERON:0001008,4.76e-19,48;UBERON:0005172,1.49e-18,54;UBERON:0005173,1.49e-18,54;UBERON:0005177,1.99e-17,101;UBERON:0004119,2.03e-17,160;UBERON:0000925,2.03e-17,160;UBERON:0006595,2.03e-17,160;UBERON:0002113,2.47e-16,26;UBERON:0003918,2.47e-16,26;UBERON:0011143,2.47e-16,26;UBERON:0005095,2.47e-16,26;UBERON:0007687,2.47e-16,26;UBERON:0002417,1.64e-15,60;UBERON:0000916,1.64e-15,60;UBERON:0005911,2.18e-15,82;UBERON:0009569,2.91e-15,112;UBERON:0006555,6.52e-14,16;UBERON:0004819,6.52e-14,16;UBERON:0004810,2.38e-13,10;UBERON:0004211,3.15e-13,15;UBERON:0009773,3.15e-13,15;UBERON:0001231,3.15e-13,15;UBERON:0001285,3.15e-13,15;UBERON:0007684,3.15e-13,15;UBERON:0004208,3.15e-13,15;UBERON:0001007,3.71e-13,145;UBERON:0001555,3.71e-13,145;UBERON:0007026,3.71e-13,145;UBERON:0000489,1.49e-12,31;UBERON:0004921,2.81e-12,118;UBERON:0003929,5.19e-11,54;UBERON:0007499,8.89e-11,25;UBERON:0009856,3.73e-10,26;UBERON:0001041,4.81e-10,87;UBERON:0001225,5.83e-10,12;UBERON:0008987,5.83e-10,12;UBERON:0009497,9.51e-10,25;UBERON:0000015,9.51e-10,25;UBERON:0002423,9.51e-10,25;UBERON:0006235,9.51e-10,25;UBERON:0004161,9.51e-10,25;UBERON:0002365,2.09e-09,31;UBERON:0002330,2.09e-09,31;UBERON:0008835,6.24e-09,22;UBERON:0003894,6.24e-09,22;UBERON:0002530,1.38e-08,59;UBERON:0009854,2.36e-08,23;UBERON:0002100,1.66e-07,199;UBERON:0001851,2.24e-07,15;UBERON:0000353,2.24e-07,15;UBERON:0000058,4.07e-07,19;UBERON:0002107,4.65e-07,19;UBERON:0006925,4.65e-07,19;UBERON:0008836,4.65e-07,19 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,1.72013755551056,16.7472280313383,0.218441372130172,0.263766978228454,0.247532705920093,0.331397375727916,0,0,0,0,0.246242116153576,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0.224723484445085,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0.383587685530591,0,0,0,1.5905718941022,0,0,0,0.175669571386252,3.53643503843824,2.91436230634034,0.741568885568859,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,1.06748995729705,0.74000264525148,0.311211035399766,0,0,0.151357427644931,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67195621010264,1.63647672354501,1.14721838155602,2.6834215348511,1.85541675650079,2.90484857173796,2.48786532036889,3.02785021050754,4.37972830890996,0,0.643240938192885,0,0,0,0.946454400318751,0.168584690078102,0.482022059766964,1.10293972732394,0.435758888184812,0.237270619111097,0.404493924480493,0.588664395376038,1.53898862778556,0,0,1.6462960453256,0,12.6755034821831,5.89696330006576,6.49868897349544,0,2.33678033231916,0.171567810298526,1.53650399572076,0,2.01057944823262,0.277765335475589,0,0,0,0.115930404975077,0.117408694235822,0,0,0,3.95102198979638,5.15091697256924,0,0,0,0,1.84780341018745,1.41775097242386,0.895585227028483,0,1.15014803749563,1.47798971368783,0.880484340132261,3.10992173311158,3.747118788841,3.28230326908588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1100756394171,4.35766729300147,1.3996218765488,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,1.03473071292505,0,0,0,0,0.686286847621712,0,0,0,1.5156378572313,3.32870879020994,3.62868351995616,0,0,0,0,0,0,0,0,0,0,0,0,2.90062679019893,6.81721999031168,1.28913384510255,0,0,0,4.96319574198153,4.31285887784723,11.7652465376528,11.6911379722609,2.42768746453614,0,0,2.37507507712353,1.54227252690289,5.41892875087706,6.02027728625824,5.86215428003588,15.7904441696458,4.47749509444357,0,0,2.05160100093111,1.64007322849853,0.976135183992909,1.854738209659,0,0,0.574265537996172,0,0,0,0,0.15350367472613,0.137836572484531,0,0,0,0,4.29740779938543,1.72971060628596,0.382838137483752,3.54052232994425,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0.359744915166629,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,1.34060455107157,0,2.82431402330337,5.59656984472599,1.68471475667626,4.87773168890343,2.52695740227655,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0.211673582723883,0.324621940274555,0,0,0,0,1.69291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,2.05854594449042,0,0,0,2.27308917445131,1.19372242368845,0,0.307160702099232,0,0.140669416410513,0.111308705022906,0,1.47787785689595,1.59398390600856,0.552567831062295,1.0077309914171,0,0.246169610922139,0,1.07842021376792,1.43216939740487,0,0.493217028184668,0,0,0,0.0927680981618513,0,1.5625665665114,10.7575799995321,0,3.41380344856499,1.27126825146383,0.236387681767936,0.344743373241465,0,0,0,0.120596438625408,0,4.20201187738654,2.65992857058193,1.09692698576986,0,2.09135616417905,1.92375646259493,0.91153644677601,0,0,0,0,0.0915975934018623,0,0,0.941881538370149,0,0.225595660617181,0,0.335643173951685,0,0.158936578980379,2.3209787098083,6.03961390188847,3.39247371441458,0,3.98104772431402,2.91909962861019,3.05515072466813,0,0,0,0.067401132980677,0.802577647298789,0,0,1.56531695145672,0.242780379534093,3.15667522279512,2.41981432097328,0,0.568679216656392,3.30711522711884,1.9700756365477,0,0,0.627865836814451,0,4.26914319044689,0.138674673013139,0,1.66587075604442,0.957651272384428,1.7472666824203,0,0.19351266257817,0.146178634172371,0.164230914106418,1.26085721434945,0.441280633457501,0.451961481561065,0,0,0,2.15106521008283,0.801588202515337,2.34798294213288,0.999048047910651,10.0863292007874,1.71804894248874,1.71594997861965,0,0.745515213392595,0,0,0,0.407992870545287,0,0,0,0,0.859530882839914,0.262887354279314,0,0.229160424011684,0,0,1.71690419254628,0.223171457441873,0.268733889946905,0,3.49487848582361,4.01794229766841,3.29663433524666,3.1005630172925,3.14967940847196,0,0.795229689809303,0.136203406111576,2.08979093004525,1.92555211236127,0.83088067605837,3.82455615637551,6.1904156364636,0.0607495566580247,5.36695500158826,4.72834243795189,5.24545881349981,0,0,0.959575986597226,0,0,0,0,0,0,0,0.082092520749339,0,0.339936274560377,3.66380584195206,3.97520666736664,0,0,1.88195521672762,0.704815022316672,2.24253566392159,2.20086027139532,2.07119527673598,0,0.592834895693833,0,1.27668251554036,0,0,0,0,0.628216385000937,0,0,0,2.29363678276028,0.443716206147409,0.124192805882767,0,1.37478448758317,0,0,2.5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| ||
|short_description=p@chr17:72428301..72428329,+ | |||
}} | }} |
Latest revision as of 20:48, 25 July 2015
Short description: | p@chr17:72428301..72428329, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:72428301..72428329, + |
Coexpression cluster: | C2434_Renal_pancreas_Hepatocyte_Alveolar_gastric_kidney_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.57e-29 | 253 |
endodermal cell | 3.95e-19 | 58 |
kidney cell | 2.72e-14 | 17 |
kidney epithelial cell | 2.72e-14 | 17 |
kidney tubule cell | 2.38e-13 | 10 |
nephron tubule epithelial cell | 2.38e-13 | 10 |
endo-epithelial cell | 2.69e-13 | 42 |
epithelial cell of nephron | 3.15e-13 | 15 |
kidney cortical cell | 5.83e-10 | 12 |
renal cortical epithelial cell | 5.83e-10 | 12 |
hepatocyte | 2.54e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.04e-18 | 106 |
cell type cancer | 5.26e-12 | 143 |
adenocarcinoma | 1.53e-11 | 25 |