FFCP PHASE1:Hg19::chr17:7462347..7462356,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:7462347..7462356,+ to FFCP PHASE1:Hg19::chr17:7462347..7462356,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8741 | |EntrezGene=8741 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11928 | |HGNC=11928 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=243bp_to_ENST00000396545_5end | |||
|cluster_id=chr17:7462347..7462356,+ | |||
|coexpression_cluster_id=C462 | |||
|description=CAGE_peak_10_at_TNFSF13_5end | |||
|id=chr17:7462347..7462356,+ | |||
|ontology_enrichment_celltype=CL:0002194!3.87e-36!63;CL:0000576!3.87e-36!63;CL:0000040!3.87e-36!63;CL:0000559!3.87e-36!63;CL:0002009!1.68e-34!65;CL:0000766!1.26e-33!76;CL:0000763!7.28e-33!112;CL:0000049!7.28e-33!112;CL:0000839!3.52e-32!70;CL:0000557!6.74e-32!71;CL:0002057!2.83e-28!42;CL:0000860!1.49e-25!45;CL:0000037!4.85e-21!172;CL:0000566!4.85e-21!172;CL:0000988!1.27e-18!182;CL:0002032!1.68e-17!165;CL:0000837!1.68e-17!165;CL:0000738!2.61e-16!140;CL:0002087!3.20e-16!119;CL:0002031!3.42e-13!124;CL:0002393!2.18e-12!9;CL:0002397!2.18e-12!9 | |||
|ontology_enrichment_celltype_v019=CL:0000235;5.19e-21;6!CL:0002393;3.19e-19;6!CL:0002397;3.19e-19;6!CL:0000766;1.03e-18;69!CL:0000576;8.82e-17;48!CL:0000473;2.05e-15;39!CL:0000234;2.05e-15;39!CL:0000763;6.91e-12;100!CL:0002619;1.65e-11;3!CL:0000875;4.75e-10;3!CL:0000767;4.75e-10;3!CL:0002396;4.75e-10;3!CL:0000860;7.52e-07;33!CL:0002057;7.52e-07;33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.47e-40,72;CL:0002194,1.52e-38,59;CL:0000576,1.52e-38,59;CL:0000040,1.52e-38,59;CL:0000559,1.52e-38,59;CL:0002009,4.81e-37,61;CL:0000473,4.80e-36,48;CL:0000234,4.80e-36,48;CL:0000557,1.05e-35,67;CL:0000763,6.99e-34,108;CL:0000049,6.99e-34,108;CL:0000839,1.09e-33,66;CL:0002393,1.02e-27,9;CL:0002397,1.02e-27,9;CL:0000037,4.37e-25,168;CL:0000988,2.82e-23,177;CL:0000738,5.38e-23,136;CL:0000860,1.72e-22,42;CL:0002057,1.72e-22,42;CL:0000235,4.51e-21,6;CL:0002032,1.35e-19,161;CL:0000837,1.35e-19,161;CL:0002087,5.37e-19,115;CL:0002031,3.08e-15,120;CL:0002619,1.66e-11,3;CL:0000767,2.26e-10,3;CL:0000875,2.57e-10,3;CL:0002396,2.57e-10,3 | |||
|ontology_enrichment_development_v019=CL:0002057;1.29e-16;42!CL:0000049;4.68e-11;108!UBERON:0010122;5.40e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.45e-46!115;UBERON:0002390!2.46e-35!102;UBERON:0003061!2.46e-35!102;UBERON:0002193!1.05e-31!112;UBERON:0002371!6.31e-28!80;UBERON:0001474!8.89e-25!86;UBERON:0002405!1.18e-20!115;UBERON:0004765!1.29e-19!101;UBERON:0001434!1.29e-19!101;UBERON:0001049!1.83e-16!57;UBERON:0005068!1.83e-16!57;UBERON:0006241!1.83e-16!57;UBERON:0007135!1.83e-16!57;UBERON:0003080!3.60e-14!42;UBERON:0002780!2.93e-13!41;UBERON:0001890!2.93e-13!41;UBERON:0006240!2.93e-13!41;UBERON:0002616!3.30e-13!59;UBERON:0000955!1.53e-10!69;UBERON:0006238!1.53e-10!69;UBERON:0001017!1.69e-10!82;UBERON:0003075!2.01e-10!86;UBERON:0007284!2.01e-10!86;UBERON:0005743!3.25e-10!86;UBERON:0002346!1.72e-09!90;UBERON:0003081!2.52e-09!216;UBERON:0002020!5.23e-09!34;UBERON:0003528!5.23e-09!34;UBERON:0000073!7.79e-09!94;UBERON:0001016!7.79e-09!94;UBERON:0001893!1.41e-08!34;UBERON:0002308!2.67e-08!9;UBERON:0000125!2.67e-08!9;UBERON:0003056!4.41e-08!61;UBERON:0002791!4.44e-08!33;UBERON:0001894!1.94e-07!7;UBERON:0006222!1.94e-07!7;UBERON:0001869!2.24e-07!32;UBERON:0002204!2.34e-07!167;UBERON:0002298!5.75e-07!8;UBERON:0000178!7.09e-07!15;UBERON:0000179!7.09e-07!15;UBERON:0000463!7.09e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001873;5.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.41e-36,98;UBERON:0003061,7.41e-36,98;UBERON:0002193,7.70e-34,108;UBERON:0002371,5.88e-33,76;UBERON:0001474,5.69e-30,82;UBERON:0002405,1.56e-29,93;UBERON:0004765,1.31e-26,90;UBERON:0001434,3.69e-23,100;UBERON:0003081,1.46e-12,203;UBERON:0002204,8.74e-11,167;UBERON:0001873,4.22e-07,2;UBERON:0010122,4.22e-07,2 | |||
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| ||
|short_description=p10@TNFSF13 | |||
}} | }} |
Latest revision as of 16:18, 17 September 2015
Short description: | p10@TNFSF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_TNFSF13_5end |
Coexpression cluster: | C462_CD14_Monocytederived_Macrophage_Hepatic_Dendritic_lung_adipose |
Association with transcript: | 243bp_to_ENST00000396545_5end |
EntrezGene: | TNFSF13 |
HGNC: | 11928 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.47e-40 | 72 |
monopoietic cell | 1.52e-38 | 59 |
monocyte | 1.52e-38 | 59 |
monoblast | 1.52e-38 | 59 |
promonocyte | 1.52e-38 | 59 |
macrophage dendritic cell progenitor | 4.81e-37 | 61 |
defensive cell | 4.80e-36 | 48 |
phagocyte | 4.80e-36 | 48 |
granulocyte monocyte progenitor cell | 1.05e-35 | 67 |
myeloid cell | 6.99e-34 | 108 |
common myeloid progenitor | 6.99e-34 | 108 |
myeloid lineage restricted progenitor cell | 1.09e-33 | 66 |
intermediate monocyte | 1.02e-27 | 9 |
CD14-positive, CD16-positive monocyte | 1.02e-27 | 9 |
hematopoietic stem cell | 4.37e-25 | 168 |
hematopoietic cell | 2.82e-23 | 177 |
leukocyte | 5.38e-23 | 136 |
classical monocyte | 1.72e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.72e-22 | 42 |
macrophage | 4.51e-21 | 6 |
hematopoietic oligopotent progenitor cell | 1.35e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.35e-19 | 161 |
nongranular leukocyte | 5.37e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 3.08e-15 | 120 |
adult endothelial progenitor cell | 1.66e-11 | 3 |
basophil | 2.26e-10 | 3 |
non-classical monocyte | 2.57e-10 | 3 |
CD14-low, CD16-positive monocyte | 2.57e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.41e-36 | 98 |
blood island | 7.41e-36 | 98 |
hemolymphoid system | 7.70e-34 | 108 |
bone marrow | 5.88e-33 | 76 |
bone element | 5.69e-30 | 82 |
immune system | 1.56e-29 | 93 |
skeletal element | 1.31e-26 | 90 |
skeletal system | 3.69e-23 | 100 |
lateral plate mesoderm | 1.46e-12 | 203 |
musculoskeletal system | 8.74e-11 | 167 |
caudate nucleus | 4.22e-07 | 2 |
future caudate nucleus | 4.22e-07 | 2 |