FFCP PHASE1:Hg19::chr1:234792841..234792866,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:234792841..234792866,- to FFCP PHASE1:Hg19::chr1:234792841..234792866,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:234792841..234792866,- | |||
|coexpression_cluster_id=C6 | |||
|description=CAGE_peak_at_chr1:234792841..234792866,- | |||
|id=chr1:234792841..234792866,- | |||
|ontology_enrichment_celltype=CL:0000860!1.63e-27!45;CL:0002057!9.60e-26!42;CL:0002009!8.31e-20!65;CL:0002194!2.78e-18!63;CL:0000576!2.78e-18!63;CL:0000040!2.78e-18!63;CL:0000559!2.78e-18!63;CL:0000557!6.96e-18!71;CL:0000766!8.15e-17!76;CL:0000839!4.99e-16!70;CL:0000763!1.54e-09!112;CL:0000049!1.54e-09!112;CL:0002076!7.42e-09!43;CL:0000063!1.46e-08!578;CL:0000738!1.81e-08!140;CL:0002087!1.14e-07!119;CL:0000223!2.03e-07!59;CL:0002031!9.48e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.01e-22;33!CL:0002057;4.01e-22;33!CL:0000473;1.43e-15;39!CL:0000234;1.43e-15;39!CL:0000576;3.65e-13;48!CL:0000766;9.19e-09;69!CL:0002166;9.78e-09;3!CL:0002076;1.41e-08;42!CL:0000226;4.26e-08;3!CL:0000842;4.26e-08;3!CL:0002621;4.26e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.25e-25,42;CL:0002057,3.25e-25,42;CL:0000473,2.61e-21,48;CL:0000234,2.61e-21,48;CL:0002009,8.16e-17,61;CL:0002194,7.14e-16,59;CL:0000576,7.14e-16,59;CL:0000040,7.14e-16,59;CL:0000559,7.14e-16,59;CL:0000557,8.47e-15,67;CL:0000839,1.29e-13,66;CL:0000766,2.38e-13,72;CL:0002076,1.54e-09,42;CL:0002166,1.34e-08,3;CL:0000223,2.68e-08,58;CL:0000226,3.18e-08,3;CL:0000842,3.18e-08,3;CL:0002621,3.71e-08,3;CL:0000763,6.10e-08,108;CL:0000049,6.10e-08,108;CL:0002087,6.94e-08,115;CL:0000738,3.41e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;2.68e-19;42 | |||
|ontology_enrichment_disease=DOID:1749!8.54e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.31e-12;14!DOID:4074;6.63e-07;2!DOID:4905;6.63e-07;2!DOID:3498;6.63e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,3.26e-12,14;DOID:4074,6.85e-07,2;DOID:4905,6.85e-07,2;DOID:3498,6.85e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004765!4.55e-18!101;UBERON:0001434!4.55e-18!101;UBERON:0002371!3.10e-17!80;UBERON:0001474!6.00e-17!86;UBERON:0002390!6.30e-13!102;UBERON:0003061!6.30e-13!102;UBERON:0002193!5.07e-11!112;UBERON:0002405!8.29e-09!115;UBERON:0002204!8.60e-08!167;UBERON:0000165!6.86e-07!28;UBERON:0000930!6.86e-07!28 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;4.26e-08;3!UBERON:0003343;2.82e-07;4!UBERON:0004785;2.82e-07;4!UBERON:0003729;5.68e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,1.36e-15,90;UBERON:0002371,9.98e-14,76;UBERON:0001474,1.43e-13,82;UBERON:0001434,2.47e-13,100;UBERON:0002390,1.82e-12,98;UBERON:0003061,1.82e-12,98;UBERON:0002193,1.05e-10,108;UBERON:0002405,3.72e-10,93;UBERON:0001949,3.71e-08,3;UBERON:0003343,3.45e-07,4;UBERON:0004785,3.45e-07,4;UBERON:0003729,5.97e-07,13 | |||
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| ||
|short_description=p@chr1:234792841..234792866,- | |||
}} | }} |
Latest revision as of 05:13, 28 July 2015
Short description: | p@chr1:234792841..234792866, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:234792841..234792866, - |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.25e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.25e-25 | 42 |
defensive cell | 2.61e-21 | 48 |
phagocyte | 2.61e-21 | 48 |
macrophage dendritic cell progenitor | 8.16e-17 | 61 |
monopoietic cell | 7.14e-16 | 59 |
monocyte | 7.14e-16 | 59 |
monoblast | 7.14e-16 | 59 |
promonocyte | 7.14e-16 | 59 |
granulocyte monocyte progenitor cell | 8.47e-15 | 67 |
myeloid lineage restricted progenitor cell | 1.29e-13 | 66 |
myeloid leukocyte | 2.38e-13 | 72 |
endo-epithelial cell | 1.54e-09 | 42 |
epithelial cell of Malassez | 1.34e-08 | 3 |
endodermal cell | 2.68e-08 | 58 |
single nucleate cell | 3.18e-08 | 3 |
mononuclear cell | 3.18e-08 | 3 |
gingival epithelial cell | 3.71e-08 | 3 |
myeloid cell | 6.10e-08 | 108 |
common myeloid progenitor | 6.10e-08 | 108 |
nongranular leukocyte | 6.94e-08 | 115 |
leukocyte | 3.41e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 1.36e-15 | 90 |
bone marrow | 9.98e-14 | 76 |
bone element | 1.43e-13 | 82 |
skeletal system | 2.47e-13 | 100 |
hematopoietic system | 1.82e-12 | 98 |
blood island | 1.82e-12 | 98 |
hemolymphoid system | 1.05e-10 | 108 |
immune system | 3.72e-10 | 93 |
gingival epithelium | 3.71e-08 | 3 |
mucosa of oral region | 3.45e-07 | 4 |
respiratory system mucosa | 3.45e-07 | 4 |
mouth mucosa | 5.97e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 3.26e-12 | 14 |
pancreas adenocarcinoma | 6.85e-07 | 2 |
pancreatic carcinoma | 6.85e-07 | 2 |
pancreatic ductal adenocarcinoma | 6.85e-07 | 2 |