FFCP PHASE1:Hg19::chr22:50970547..50970561,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:50970547..50970561,- to FFCP PHASE1:Hg19::chr22:50970547..50970561,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=440836 | |EntrezGene=440836 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=34388 | |HGNC=34388 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_uc003bmg.2_5end | |||
|cluster_id=chr22:50970547..50970561,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_6_at_ODF3B_5end | |||
|id=chr22:50970547..50970561,- | |||
|ontology_enrichment_celltype=CL:0002057!1.73e-30!42;CL:0000860!8.78e-28!45;CL:0000766!6.41e-25!76;CL:0002009!4.86e-24!65;CL:0002194!1.44e-23!63;CL:0000576!1.44e-23!63;CL:0000040!1.44e-23!63;CL:0000559!1.44e-23!63;CL:0000557!1.38e-21!71;CL:0000839!3.52e-19!70;CL:0000763!1.27e-14!112;CL:0000049!1.27e-14!112;CL:0000738!3.12e-11!140;CL:0002087!1.13e-08!119;CL:0002393!6.31e-07!9;CL:0002397!6.31e-07!9;CL:0002031!6.58e-07!124;CL:0000037!9.25e-07!172;CL:0000566!9.25e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.34e-46;33!CL:0002057;4.34e-46;33!CL:0000473;1.13e-37;39!CL:0000234;1.13e-37;39!CL:0000576;9.17e-36;48!CL:0000766;3.21e-25;69!CL:0000763;3.31e-11;100!CL:0002393;1.67e-09;6!CL:0002397;1.67e-09;6!CL:0000094;4.24e-09;8!CL:0002087;5.33e-08;104!CL:0000081;6.90e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.56e-62,42;CL:0002057,4.56e-62,42;CL:0000473,2.31e-60,48;CL:0000234,2.31e-60,48;CL:0000766,3.29e-52,72;CL:0002194,4.19e-49,59;CL:0000576,4.19e-49,59;CL:0000040,4.19e-49,59;CL:0000559,4.19e-49,59;CL:0002009,5.63e-47,61;CL:0000557,2.13e-43,67;CL:0000839,3.19e-42,66;CL:0000763,3.13e-30,108;CL:0000049,3.13e-30,108;CL:0000738,1.32e-23,136;CL:0002087,5.14e-21,115;CL:0000037,1.27e-16,168;CL:0002031,1.91e-16,120;CL:0000988,1.36e-15,177;CL:0002032,9.94e-15,161;CL:0000837,9.94e-15,161;CL:0002393,9.70e-13,9;CL:0002397,9.70e-13,9;CL:0000094,2.63e-09,8;CL:0000081,5.56e-08,11 | |||
|ontology_enrichment_development_v019=CL:0002057;3.08e-44;42!CL:0000049;3.56e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.39e-25!102;UBERON:0003061!3.39e-25!102;UBERON:0002193!1.76e-23!112;UBERON:0002371!6.75e-20!80;UBERON:0002405!5.62e-17!115;UBERON:0001474!6.53e-17!86;UBERON:0004765!1.44e-15!101;UBERON:0001434!1.44e-15!101;UBERON:0003081!1.84e-12!216;UBERON:0002204!2.76e-08!167;UBERON:0007023!3.65e-08!115;UBERON:0000926!5.36e-08!448;UBERON:0004120!5.36e-08!448;UBERON:0006603!5.36e-08!448;UBERON:0000178!3.42e-07!15;UBERON:0000179!3.42e-07!15;UBERON:0000463!3.42e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.28e-14;15!UBERON:0000179;6.28e-14;15!UBERON:0000463;6.28e-14;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.08e-46,98;UBERON:0003061,3.08e-46,98;UBERON:0002193,1.18e-41,108;UBERON:0002371,4.61e-38,76;UBERON:0001474,4.32e-34,82;UBERON:0004765,1.24e-29,90;UBERON:0002405,1.48e-29,93;UBERON:0001434,1.49e-27,100;UBERON:0003081,5.89e-23,203;UBERON:0000178,3.36e-14,15;UBERON:0000179,3.36e-14,15;UBERON:0000463,3.36e-14,15;UBERON:0002204,3.96e-13,167;UBERON:0000926,1.65e-09,315;UBERON:0004120,1.65e-09,315;UBERON:0006603,1.65e-09,315 | |||
|phase1_expression=0,0.214100523890983,0.704772020479856,0,0,0,0,0,0.261185628199839,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0.662794751455832,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,3.93364276848904,0.383829398097213,2.78669021968937,0,0,1.10926203050036,0,0,0.293600439334847,3.87796785972314,5.81578897663411,6.51032612147556,0.895661896959697,1.94336199611388,1.03030227053675,5.08893835728477,7.17964293008738,6.79235371325885,6.0431549595478,4.52284676824008,3.09706370895104,12.0830804775303,7.68482119587302,5.20260905754887,4.48169384957604,3.87290810150296,9.47985406160392,4.51781614902251,5.18521685109907,5.16864014223695,5.20342617030534,6.09765151444578,8.31138263538754,9.89553900560148,8.57693727773017,11.08184351385,6.67481248845743,3.40431134814684,4.35975574296902,7.5374599577023,4.17186334736161,5.42972111762792,5.44859552370032,4.78760926783834,3.79754864929061,2.5350634357433,3.4016687994407,2.72556239160889,6.06574608191074,9.01061357049038,4.018139667427,1.99508920618874,1.79025009479181,1.82664153764634,0,0,0,0,0,0,0.661044872784862,0,0,0,0.382273228125229,0,0.560508562981536,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0.255973222308837,0,0.236777252044017,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0.50133791063589,0.289693037921647,0,1.45990461090791,0,0,0.087834785693126,1.76821751921912,3.27865759463288,1.11235332835329,0,0,0.26591592103773,0,1.71598473234038,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,2.63560834872127,3.87780264148325,0.872188104285069,0,0.12663051166458,0.132409180813219,1.14734648299525,0.354668382198357,0,0,0,0,0.538842688278752,0,0,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0,3.56400857184616,0.989067717114227,0,0,0,0,0,0,0.30648779579902,0.901428353439581,0,0,0,0,0.300091096084402,0.103052529238439,0.257640540045629,0.18611685633159,0,0.0974370051611986,0.252433774244115,0,0.161646056818812,0.355009592516614,0,0,0.193260853163297,0.272746120590835,0,0,0,0.232387885739037,0,0,0,0,0,0,0.928735856063958,0,0,0,0.241011029883482,0.55146986366197,0,0.237270619111097,0.134831308160164,0,0.769494313892781,0,0,0,1.47008711385542,2.53510069643662,2.94848165003288,0,0,0,0,0.109750285408626,0,0.201057944823262,0.370353780634118,0.325808305310325,0,0,0,0,0.288732895522148,0.462985512576611,0,0,0,1.47730203652438,0.936017060556951,2.22946743433092,0,0.503946384596579,0.425325291727159,0,0,0,0,0,0,0.288239906833923,0,0,0.381988425558278,0,0,0.102827492703324,0,0.285826432630578,0,0,0,1.16344544182,7.15312891703765,0,0,0,0.257207374262142,0,0.266422179016099,0.57191197463259,1.08524321078289,0,0,0.710783897485092,0.791951872933429,0,0,0.199945982364114,0,2.51128545716063,0,0,1.14861935834114,0,0,0,0,0,0.197030760201927,0,0.256686072559497,0,0,0,0,0,2.99602809578873,5.9832291840805,5.38740167466846,0.12269149171914,0,0,0.623912584592421,0,0.473107245101804,0.35142424497814,0.300946099727719,2.27407504055985,0,0,0,0,0,0,2.89475236572042,4.96142661882819,1.81436848265855,0,0,1.20956117331872,0,0.153461973288062,0,0.256278298511402,0,0,0,0,0.177561725313127,0.0821271560138091,0,0,0.120859449591622,0.200506470303285,0.276242966807689,0,0,0,0,0.0770153371044148,0.784349769176855,0,0.422206515571503,0,0,0,0,0,0.501689773854853,0.254876273045038,0.831076008928724,0,0,0,0,0,0,1.13345112812495,0,0,0.574265537996172,0.650060246036521,0,0.386682873168488,0.154048617114644,0.307007349452259,0,0.537101224341368,0.435050081742686,0.0852266274161009,0.178064071293475,0.495854746082934,1.92190067365106,0.510450849978337,0.708104465988849,0.464845549297286,0,0.6970372701606,1.54016790088044,0,0,0,0,0,0,0.190630193923825,0,0,0.95460974377781,0.78494864019923,0,0,0.353437207037059,0,0,0,0,3.89941583410055,0,0,0,0,0.551365343546124,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0.392996164052485,0,0,1.47775344708365,1.64647446479951,0,0,0.48111056362756,0.670302275535787,1.08890984861323,0.753150406214233,0.86101074534246,1.68471475667626,0.443430153536676,0.459446800413919,6.5968189200182,6.88173486428138,6.83576624608995,4.76463550915578,4.93634727703433,11.6725196014689,7.56044012133361,12.6900028207083,0,0,0.245040215981032,0,0,0,0,0,0,0,0.324621940274555,0,0,0.156679895773023,0,0,0.1605880751037,0.201799707191048,0.425846237690326,0,0.921722292925374,0,0.333698283423817,0,0,0,0,0,0,0.37428108081644,1.90460633053462,0,0.111443384277478,0,0.23874448473769,0.296964680832639,0.307160702099232,0,0,1.44701316529778,0.16480387422676,0,1.19548792950642,1.38141957765574,0,0,0.738508832766417,0,0.179736702294654,1.25314822272926,0.511572370226872,0.986434056369336,2.3948309234694,0,0,0.185536196323703,0,0,0.349839999984783,0.724999575434793,0.1137934482855,0,0,0,0.291604613383254,0.173624994933292,0.885741385813839,0,0,0.221158519862449,0,0.438770794307945,0,0.278847488557207,0.538651809526579,0.113942055847001,0,0,1.08647371922008,0.63800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| ||
|short_description=p6@ODF3B | |||
}} | }} |
Latest revision as of 21:10, 15 September 2015
Short description: | p6@ODF3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ODF3B_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | -7bp_to_uc003bmg.2_5end |
EntrezGene: | ODF3B |
HGNC: | 34388 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.56e-62 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.56e-62 | 42 |
defensive cell | 2.31e-60 | 48 |
phagocyte | 2.31e-60 | 48 |
myeloid leukocyte | 3.29e-52 | 72 |
monopoietic cell | 4.19e-49 | 59 |
monocyte | 4.19e-49 | 59 |
monoblast | 4.19e-49 | 59 |
promonocyte | 4.19e-49 | 59 |
macrophage dendritic cell progenitor | 5.63e-47 | 61 |
granulocyte monocyte progenitor cell | 2.13e-43 | 67 |
myeloid lineage restricted progenitor cell | 3.19e-42 | 66 |
myeloid cell | 3.13e-30 | 108 |
common myeloid progenitor | 3.13e-30 | 108 |
leukocyte | 1.32e-23 | 136 |
nongranular leukocyte | 5.14e-21 | 115 |
hematopoietic stem cell | 1.27e-16 | 168 |
hematopoietic lineage restricted progenitor cell | 1.91e-16 | 120 |
hematopoietic cell | 1.36e-15 | 177 |
hematopoietic oligopotent progenitor cell | 9.94e-15 | 161 |
hematopoietic multipotent progenitor cell | 9.94e-15 | 161 |
intermediate monocyte | 9.70e-13 | 9 |
CD14-positive, CD16-positive monocyte | 9.70e-13 | 9 |
granulocyte | 2.63e-09 | 8 |
blood cell | 5.56e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.08e-46 | 98 |
blood island | 3.08e-46 | 98 |
hemolymphoid system | 1.18e-41 | 108 |
bone marrow | 4.61e-38 | 76 |
bone element | 4.32e-34 | 82 |
skeletal element | 1.24e-29 | 90 |
immune system | 1.48e-29 | 93 |
skeletal system | 1.49e-27 | 100 |
lateral plate mesoderm | 5.89e-23 | 203 |
blood | 3.36e-14 | 15 |
haemolymphatic fluid | 3.36e-14 | 15 |
organism substance | 3.36e-14 | 15 |
musculoskeletal system | 3.96e-13 | 167 |
mesoderm | 1.65e-09 | 315 |
mesoderm-derived structure | 1.65e-09 | 315 |
presumptive mesoderm | 1.65e-09 | 315 |