FFCP PHASE1:Hg19::chr3:115648872..115648875,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:115648872..115648875,+ to FFCP PHASE1:Hg19::chr3:115648872..115648875,+: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:115648872..115648875,+ | |||
|coexpression_cluster_id=C4270 | |||
|description=CAGE_peak_at_chr3:115648872..115648875,+ | |||
|id=chr3:115648872..115648875,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000319;9.42e-10;1!CL:0002379;3.00e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,9.44e-10,1;CL:0002379,4.15e-09,1;CL:0000066,4.74e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.00e-09;1 | |||
|ontology_enrichment_disease=DOID:305!4.91e-12!106;DOID:0050687!3.06e-09!143;DOID:14566!3.03e-08!239;DOID:162!3.01e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:4929;8.91e-17;2!DOID:299;4.08e-15;25!DOID:3111;7.96e-10;1!DOID:3603;7.96e-10;1!DOID:3030;9.42e-10;1!DOID:5662;9.42e-10;1!DOID:3620;3.00e-09;1!DOID:3565;3.00e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4929,3.38e-17,2;DOID:305,1.41e-16,106;DOID:299,3.15e-15,25;DOID:0050687,1.55e-11,143;DOID:3111,7.98e-10,1;DOID:3603,7.98e-10,1;DOID:5662,8.68e-10,1;DOID:3030,9.44e-10,1;DOID:3620,4.15e-09,1;DOID:3565,4.15e-09,1;DOID:162,6.35e-09,235;DOID:14566,1.15e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0002294!3.94e-08!7;UBERON:0001173!3.94e-08!7;UBERON:0004912!3.94e-08!7;UBERON:0002075!1.42e-07!18 | |||
|ontology_enrichment_uberon_v019=UBERON:0002394;1.27e-18;4!UBERON:0003928;1.27e-18;4!UBERON:0002294;6.95e-11;7!UBERON:0001173;6.95e-11;7!UBERON:0002134;1.32e-09;1!UBERON:0005208;1.32e-09;1!UBERON:0004145;1.32e-09;1!UBERON:0005946;1.32e-09;1!UBERON:0005965;1.32e-09;1!UBERON:0002078;1.32e-09;1!UBERON:0000941;3.00e-09;1!UBERON:0007195;3.00e-09;1!UBERON:0004913;3.00e-09;1!UBERON:0001785;3.00e-09;1!UBERON:0002464;3.00e-09;1!UBERON:0004904;3.00e-09;1!UBERON:0003703;3.00e-09;1!UBERON:0001021;3.00e-09;1!UBERON:0001174;3.00e-09;1!UBERON:0004914;3.00e-09;1!UBERON:0000058;9.15e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002394,9.16e-13,6;UBERON:0003928,9.16e-13,6;UBERON:0002134,1.21e-09,1;UBERON:0005208,1.21e-09,1;UBERON:0005946,1.21e-09,1;UBERON:0005965,1.21e-09,1;UBERON:0002078,1.21e-09,1;UBERON:0004913,2.16e-09,1;UBERON:0003703,2.16e-09,1;UBERON:0001174,2.16e-09,1;UBERON:0004914,2.16e-09,1;UBERON:0000941,2.55e-09,1;UBERON:0001785,2.55e-09,1;UBERON:0002464,2.55e-09,1;UBERON:0004904,2.55e-09,1;UBERON:0001021,2.55e-09,1;UBERON:0003902,2.55e-09,1;UBERON:0005425,2.55e-09,1;UBERON:0007195,5.28e-09,1;UBERON:0002294,1.12e-08,9;UBERON:0001173,1.12e-08,9;UBERON:0004912,1.12e-08,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.472674085820339,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.309157587715317,0,0,0.506328996723799,0,0.504867548488229,0,0,0.355009592516614,0.201504196455281,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0.845302752556,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.958499421966331,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0.284136146806413,0.95497793895076,0,0.307160702099232,0,0,0,0,0,0,0,0,1.84083628503879,0,0,1.79736702294654,2.50629644545853,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,1.19472429772959,0,0,0,0.195984794828755,0,0,0,2.32215195093804,1.0232504392066,1.47807822695777,0,0,0,0.959293472527256,0.19871461170299,0,0.195551382734803,0.0801588202515337,0.426905989478705,0,0.432271251462318,0,0,0.288109595976299,1.36677789121976,0,0.135904206073614,0.418411385249333,0,0.288950589901519,0,0,0,0,0,0,0,2.87149209830726,0,0,0,0,0,0,0.157566364614447,0,0.404421263125109,0.393709926058995,0,0,0,0.643012593860077,0,0,0,0,0,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,1.17632909849086,0,0,0,0,0,0,0.50313580350515,0,0,0,0.310874401165561,0.295710299979268,0,0,0.310525913752519,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21543982470953,0,0.389720617678777,0,0,0.327609848846413,4.66968526632067,6.12805157740018,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0.247871528518004,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0.235939446695481,0,1.38630799380406,0.381382095467167,0.690359926060101,0,0,0.20170506870352,0,0,0,1.47856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80166426424772,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.340853619036631,0,1.14553434272025,1.86123831398592,0,0,4.31861027907069,0.609589624911347,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,0.432626562123789,0,0,0,0.203977659483963,0,0.18378979906969,0,0,0,0,0,0.213233981900981,0,0,0,3.47608773999902,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0.213454691755431,0,1.97615444634491,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0.547497700291537,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.472674085820339,0.443458794925128,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.309157587715317,0,0,0.506328996723799,0,0.504867548488229,0,0,0.355009592516614,0.201504196455281,0,0,0,0,0.121973706129595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0.845302752556,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0.958499421966331,1.14861935834114,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,0,0,0,0,0,0,0.207970861530807,0,0,0.117141414992713,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0.15403067420883,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0.284136146806413,0.95497793895076,0,0.307160702099232,0,0,0,0,0,0,0,0,1.84083628503879,0,0,1.79736702294654,2.50629644545853,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0.762760950878299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0,0,0,0,0,0,0.593042257361244,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0.330991955875499,0.313932918407225,1.19472429772959,0,0,0,0.195984794828755,0,0,0,2.32215195093804,1.0232504392066,1.47807822695777,0,0,0,0.959293472527256,0.19871461170299,0,0.195551382734803,0.0801588202515337,0.426905989478705,0,0.432271251462318,0,0,0.288109595976299,1.36677789121976,0,0.135904206073614,0.418411385249333,0,0.288950589901519,0,0,0,0,0,0,0,2.87149209830726,0,0,0,0,0,0,0.157566364614447,0,0.404421263125109,0.393709926058995,0,0,0,0.643012593860077,0,0,0,0,0,0,0,0,0.105600336519406,0.179287339332845,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0.258565912723101,0.13223260174269,0.171086837884329,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,1.17632909849086,0,0,0,0,0,0,0.50313580350515,0,0,0,0.310874401165561,0.295710299979268,0,0,0.310525913752519,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21543982470953,0,0.389720617678777,0,0,0.327609848846413,4.66968526632067,6.12805157740018,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0,0.247871528518004,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0.235939446695481,0,1.38630799380406,0.381382095467167,0.690359926060101,0,0,0.20170506870352,0,0,0,1.47856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80166426424772,0,0,0,0.222462803784138,0,0,0,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,0,0,0.118332000730565,0.340853619036631,0,1.14553434272025,1.86123831398592,0,0,4.31861027907069,0.609589624911347,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.924351257262837,0.432626562123789,0,0,0,0.203977659483963,0,0.18378979906969,0,0,0,0,0,0.213233981900981,0,0,0,3.47608773999902,0,0,0,0.342233301085281,0,0,0,0.0814032686109745,0.213454691755431,0,1.97615444634491,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr3:115648872..115648875,+ | |||
}} | }} |
Latest revision as of 14:37, 29 July 2015
Short description: | p@chr3:115648872..115648875, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:115648872..115648875, + |
Coexpression cluster: | C4270_mucinous_pleomorphic_signet_thyroid_bile_oral_tubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 9.44e-10 | 1 |
meningothelial cell | 4.15e-09 | 1 |
epithelial cell | 4.74e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
bile duct | 9.16e-13 | 6 |
digestive system duct | 9.16e-13 | 6 |
tricuspid valve | 1.21e-09 | 1 |
right atrium valve | 1.21e-09 | 1 |
outflow tract of atrium | 1.21e-09 | 1 |
outflow part of right atrium | 1.21e-09 | 1 |
right cardiac atrium | 1.21e-09 | 1 |
hepatopancreatic ampulla | 2.16e-09 | 1 |
extrahepatic bile duct | 2.16e-09 | 1 |
common bile duct | 2.16e-09 | 1 |
duodenal papilla | 2.16e-09 | 1 |
cranial nerve II | 2.55e-09 | 1 |
cranial nerve | 2.55e-09 | 1 |
nerve trunk | 2.55e-09 | 1 |
nerve connecting eye with brain | 2.55e-09 | 1 |
nerve | 2.55e-09 | 1 |
retinal neural layer | 2.55e-09 | 1 |
presumptive neural retina | 2.55e-09 | 1 |
stroma of bone marrow | 5.28e-09 | 1 |
biliary system | 1.12e-08 | 9 |
biliary tree | 1.12e-08 | 9 |
biliary bud | 1.12e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 3.38e-17 | 2 |
carcinoma | 1.41e-16 | 106 |
adenocarcinoma | 3.15e-15 | 25 |
cell type cancer | 1.55e-11 | 143 |
cystadenocarcinoma | 7.98e-10 | 1 |
mucinous cystadenocarcinoma | 7.98e-10 | 1 |
pleomorphic carcinoma | 8.68e-10 | 1 |
mucinous adenocarcinoma | 9.44e-10 | 1 |
central nervous system cancer | 4.15e-09 | 1 |
meningioma | 4.15e-09 | 1 |
cancer | 6.35e-09 | 235 |
disease of cellular proliferation | 1.15e-08 | 239 |