FFCP PHASE1:Hg19::chr5:73109339..73109409,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:73109339..73109409,+ to FFCP PHASE1:Hg19::chr5:73109339..73109409,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64283 | |EntrezGene=64283 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=B5MDA3 | |UniProt=B5MDA3 | ||
|association_with_transcript=0bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |||
|cluster_id=chr5:73109339..73109409,+ | |||
|coexpression_cluster_id=C4518 | |||
|description=CAGE_peak_2_at_RGNEF_5end | |||
|id=chr5:73109339..73109409,+ | |||
|ontology_enrichment_celltype=CL:1000497!6.99e-07!18;CL:0002518!6.99e-07!18;CL:0002077!9.44e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.35e-11;17!CL:0002518;5.35e-11;17!CL:1000507;2.79e-10;10!CL:1000494;2.79e-10;10!CL:1000449;9.81e-09;15!CL:0002681;1.70e-07;12!CL:0002584;1.70e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,4.64e-11,17;CL:0002518,4.64e-11,17;CL:1000507,2.69e-10,10;CL:1000494,2.69e-10,10;CL:1000449,8.62e-09,15;CL:0000066,1.16e-07,253;CL:0002681,1.47e-07,12;CL:0002584,1.47e-07,12;CL:0002076,2.62e-07,42;CL:0000223,9.16e-07,58;CL:0000075,9.88e-07,27 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.25e-07;10 | |||
|ontology_enrichment_disease=DOID:120!1.19e-12!27;DOID:193!3.91e-11!29;DOID:2394!2.13e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:120;7.48e-15;27!DOID:193;2.34e-13;29!DOID:2394;2.72e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,7.66e-15,27;DOID:193,2.39e-13,29;DOID:2394,3.66e-11,14 | |||
|ontology_enrichment_uberon=UBERON:0003133!1.67e-12!48;UBERON:0005156!2.43e-12!59;UBERON:0000990!2.43e-12!59;UBERON:0003100!9.40e-12!41;UBERON:0003134!1.17e-10!37;UBERON:0000474!1.17e-10!37;UBERON:0000489!1.28e-10!32;UBERON:0001008!4.93e-10!45;UBERON:0006554!1.43e-09!44;UBERON:0002113!3.18e-09!27;UBERON:0003918!3.18e-09!27;UBERON:0005095!3.18e-09!27;UBERON:0007687!3.18e-09!27;UBERON:0000475!8.98e-09!365;UBERON:0004876!4.65e-08!20;UBERON:0003886!1.22e-07!63;UBERON:0004175!1.59e-07!25;UBERON:0000922!2.18e-07!612;UBERON:0000464!3.73e-07!104;UBERON:0002050!5.96e-07!605;UBERON:0005423!5.96e-07!605;UBERON:0002553!6.60e-07!70;UBERON:0000992!8.75e-07!13 | |||
|ontology_enrichment_uberon_v019=UBERON:0003134;1.37e-13;33!UBERON:0000489;1.07e-12;29!UBERON:0004175;2.51e-12;21!UBERON:0003133;3.11e-12;44!UBERON:0003100;4.96e-11;41!UBERON:0006554;7.55e-11;30!UBERON:0001008;7.55e-11;30!UBERON:0002113;1.06e-10;24!UBERON:0011143;1.06e-10;24!UBERON:0004211;2.79e-10;10!UBERON:0009773;2.79e-10;10!UBERON:0001231;2.79e-10;10!UBERON:0004810;2.79e-10;10!UBERON:0000474;4.84e-10;37!UBERON:0003975;1.97e-09;18!UBERON:0005156;2.00e-09;59!UBERON:0000990;2.00e-09;59!UBERON:0006555;9.81e-09;15!UBERON:0004819;9.81e-09;15!UBERON:0001285;9.81e-09;15!UBERON:0007684;9.81e-09;15!UBERON:0000995;1.02e-08;17!UBERON:0000991;1.03e-07;21!UBERON:0001225;1.70e-07;12!UBERON:0008987;1.70e-07;12!UBERON:0000992;4.42e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003133,4.16e-16,48;UBERON:0005156,2.29e-15,59;UBERON:0000990,2.29e-15,59;UBERON:0000489,6.63e-15,31;UBERON:0003100,1.90e-14,41;UBERON:0003134,9.94e-13,37;UBERON:0000474,9.94e-13,37;UBERON:0002113,1.02e-12,26;UBERON:0003918,1.02e-12,26;UBERON:0011143,1.02e-12,26;UBERON:0005095,1.02e-12,26;UBERON:0007687,1.02e-12,26;UBERON:0001008,8.28e-11,48;UBERON:0004810,2.69e-10,10;UBERON:0006554,3.24e-10,47;UBERON:0006555,7.87e-10,16;UBERON:0004819,7.87e-10,16;UBERON:0004175,1.18e-09,25;UBERON:0004211,8.62e-09,15;UBERON:0009773,8.62e-09,15;UBERON:0001231,8.62e-09,15;UBERON:0001285,8.62e-09,15;UBERON:0007684,8.62e-09,15;UBERON:0004208,8.62e-09,15;UBERON:0003886,3.28e-08,54;UBERON:0000991,9.72e-08,21;UBERON:0009196,9.72e-08,21;UBERON:0009117,9.72e-08,21;UBERON:0005564,9.72e-08,21;UBERON:0002417,1.05e-07,60;UBERON:0000916,1.05e-07,60;UBERON:0001225,1.47e-07,12;UBERON:0008987,1.47e-07,12;UBERON:0003103,2.80e-07,68;UBERON:0002553,2.80e-07,61;UBERON:0004176,3.21e-07,22;UBERON:0005795,3.70e-07,22;UBERON:0003975,4.00e-07,22;UBERON:0000992,4.41e-07,13 | |||
|phase1_expression=0.181678379270557,0,6.90676580070259,0,1.34088328328186,1.74467704820074,0,0,0.261185628199839,2.21160542851358,0,0,0,0.618831764800233,1.32558950291166,0.672325146451775,0,0,0,0.123121058076788,0,0,0.286235987131057,0.410623275218653,0.125542639594803,0,0,0,0,0,0,0,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89151321907653,2.00535164254356,4.77993512570718,7.15757352345989,0.973269740605272,1.41802225746102,1.77383517970051,1.58102614247627,7.85874452986276,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,4.47274756525787,0,1.19168262731897,0.286836620748814,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0.113432183160021,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0,0.252433774244115,0.0920498986422993,0,0,0,0.339121184620975,0.193260853163297,1.09098448236334,1.14721838155602,0.121973706129595,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05861847192275,3.60292401626904,1.53650399572076,2.24803506515239,1.20634766893957,2.4998880192803,0,0,4.3299402607582,0.811512834825538,6.34006948873437,0,0,0,0,0,0,0,0,0.93733833986777,6.71928512795438,2.83550194484773,10.1201130654219,6.39394664730716,1.15014803749563,0,0,0,0.144119953416961,0.12624243342638,0.63497894292169,1.90994212779139,0,0,1.23392991243988,4.80548892550268,10.2897515747008,0,0,0,0,0,0,5.58470044828228,4.16029747645464,0,0,0,0,0,0,0,0,0,0,0.871533458600294,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0.205476322550383,0.179060963239896,0,0,0,0,1.27047312111232,0,0,0.167516265334349,0,0,0,0,1.10422342547226,2.00068208423871,1.08506009479894,0,0,0,1.17141414992713,0.902838299183157,0,1.03473071292505,0,0.553107505625109,0,0,0,0,0,0,0,0,0,0.248107807818777,0.153461973288062,0.280660094433074,11.9169408807802,0,1.28683136914886,2.96836132889982,0.308419387605311,0.177561725313127,0.164254312027618,0,0,2.77976734060731,1.40354529212299,5.0644543914743,0,0,0.393373244878272,5.41439535488894,46.4402482739621,5.49044838423799,0,41.4817901549001,0,0,4.53423423814493,1.54227252690289,8.94123243894714,4.51520796469368,7.90116446439619,7.47968408035852,8.73111543416495,0,0,0,0.328014645699706,0,2.06082023295445,0,0,5.16838984196555,3.25030123018261,35.3504645657151,0.48335359146061,0.154048617114644,0.460511024178389,0.275673144969061,1.71872391789238,0.145016693914229,1.53407929348982,0.356128142586949,6.94196644516108,4.22818148203234,18.1210051742309,1.31505115112215,0.464845549297286,0.62962469366128,0.6970372701606,0,0,0.869932992075073,0,1.14499909393593,0,0.632758849437452,0.190630193923825,0,0,0.95460974377781,0,0,0,0,0.404364963146632,1.58510321173008,0,0,0,0,0.136499911407986,0,0,4.41092274836899,0,0,0,0,0.405820753925408,0.30982349809975,0,0.573645408816206,0.392996164052485,0.7133421029625,1.41904425628239,0,0.329294892959902,0,0,2.69421915631434,0,0,2.16530741786592,0.86101074534246,0,1.7737206141467,6.20253180558791,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,1.1253553312841,0,0,0,0.996239941255349,1.38141957765574,17.6352923497993,0.102268682502155,0,0.311039587661807,0,5.54965641494388,0,1.7755813014648,0,0,0,0,0,0,0,1.44999915086959,2.16207551742449,0.508507300585533,0,0,0,0,0,0.361789315876224,0,0,0,0,0,11.9904420079599,8.61842895242527,0,0,0,0,1.5950057986596,0.366390373607449,0,0,0,0,0,0,0,0,0,18.5678296784664,19.5879369790977,0.848118428603645,0,1.99052386215701,4.95362361218699,4.888241159469,0,0,0,0,0,0,0,0,0,5.91876604274086,0,0,0.126373159256976,0.751617097072463,1.7626992537532,0,0,0,0,31.8762691553368,0,0.173559738335131,0,0,9.43524008506963,0,0,0,0,5.52837393983991,0,2.03382666702479,0,0,0,0,0,1.92107695265417,7.39295555453882,4.03453168031497,0,0.343189995723929,0,0,0.235694034616795,0.815425236441684,0.836822770498666,0,0,0,0.136905378891993,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,1.41809728153003,1.2362378757175,1.3480708770837,8.46476341026839,0,0,0,0,0,0,0.449947783103001,12.3808312729272,0.121499113316049,0,32.4679514072697,34.3577552284238,0.211200673038813,0,0,0,0,0,4.3439968140297,10.3706578944152,7.184921922407,0,0,2.3854323049959,0,0.439656701034247,0,0.646414781807753,1.19009341568421,15.9110759232426,0,2.45611048905698,2.98688179689365,0.828478110694391,0,0,0,7.66009509324218,0,0,0,0,0,0,0,0.1251909307065,0.573409195690071,0.887432412294818,0.745156835296601,0,0,0,0,1.17632909849086,0,1.44921028610825,0.298509605773748,0.233713309847224,0,1.89403005275089,9.0564444630927,0,0,0,0,0,7.00905775520291,0.899606224327209,6.36578123192664,15.3441296901117,2.65841714557995,6.26094074174081,1.05180326298053,9.52013030421988,0.406870733204662,12.5475574849766,1.39633724155235,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| ||
|short_description=p2@RGNEF | |||
}} | }} |
Latest revision as of 16:19, 18 September 2015
Short description: | p2@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RGNEF_5end |
Coexpression cluster: | C4518_Renal_renal_serous_kidney_Sertoli_mesothelioma_mesenchymal |
Association with transcript: | 0bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 4.64e-11 | 17 |
kidney epithelial cell | 4.64e-11 | 17 |
kidney tubule cell | 2.69e-10 | 10 |
nephron tubule epithelial cell | 2.69e-10 | 10 |
epithelial cell of nephron | 8.62e-09 | 15 |
epithelial cell | 1.16e-07 | 253 |
kidney cortical cell | 1.47e-07 | 12 |
renal cortical epithelial cell | 1.47e-07 | 12 |
endo-epithelial cell | 2.62e-07 | 42 |
endodermal cell | 9.16e-07 | 58 |
columnar/cuboidal epithelial cell | 9.88e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 7.66e-15 | 27 |
reproductive organ cancer | 2.39e-13 | 29 |
ovarian cancer | 3.66e-11 | 14 |