FFCP PHASE1:Hg19::chr9:140500126..140500149,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:140500126..140500149,+ to FFCP PHASE1:Hg19::chr9:140500126..140500149,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92714 | |EntrezGene=92714 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28633 | |HGNC=28633 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T371,F2Z3I4 | |UniProt=Q5T371,F2Z3I4 | ||
|association_with_transcript=0bp_to_ENST00000431925,ENST00000461627,ENST00000483563_5end | |||
|cluster_id=chr9:140500126..140500149,+ | |||
|description=CAGE_peak_1_at_ARRDC1_5end | |||
|id=chr9:140500126..140500149,+ | |||
|ontology_enrichment_celltype=CL:0000766!6.84e-18!76;CL:0000763!6.78e-17!112;CL:0000049!6.78e-17!112;CL:0002194!9.08e-17!63;CL:0000576!9.08e-17!63;CL:0000040!9.08e-17!63;CL:0000559!9.08e-17!63;CL:0002009!2.83e-16!65;CL:0000066!3.64e-16!254;CL:0000557!4.02e-16!71;CL:0000839!1.73e-14!70;CL:0000037!4.07e-14!172;CL:0000566!4.07e-14!172;CL:0000860!4.40e-14!45;CL:0000988!6.38e-14!182;CL:0002032!1.27e-13!165;CL:0000837!1.27e-13!165;CL:0002057!5.66e-13!42;CL:0000738!1.08e-12!140;CL:0002087!5.52e-12!119;CL:0002031!2.77e-10!124;CL:0002076!4.79e-10!43;CL:0000063!1.86e-09!578;CL:0000223!3.72e-09!59;CL:0002393!6.89e-07!9;CL:0002397!6.89e-07!9;CL:0002368!8.51e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.49e-09;48!CL:0000473;1.40e-08;39!CL:0000234;1.40e-08;39!CL:0000766;1.97e-08;69!CL:0002076;2.22e-08;42!CL:0000860;8.47e-08;33!CL:0002057;8.47e-08;33!CL:0002368;7.43e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,2.91e-17,72;CL:0000066,1.22e-16,253;CL:0000763,3.22e-16,108;CL:0000049,3.22e-16,108;CL:0002194,3.54e-16,59;CL:0000576,3.54e-16,59;CL:0000040,3.54e-16,59;CL:0000559,3.54e-16,59;CL:0002009,1.14e-15,61;CL:0000557,1.69e-15,67;CL:0000473,4.13e-15,48;CL:0000234,4.13e-15,48;CL:0000839,7.32e-14,66;CL:0000037,1.79e-13,168;CL:0000988,2.86e-13,177;CL:0002032,5.50e-13,161;CL:0000837,5.50e-13,161;CL:0000860,5.66e-13,42;CL:0002057,5.66e-13,42;CL:0000738,4.58e-12,136;CL:0002087,2.32e-11,115;CL:0002076,5.72e-11,42;CL:0000223,7.17e-10,58;CL:0002031,1.08e-09,120;CL:0002393,6.89e-07,9;CL:0002397,6.89e-07,9;CL:0002368,8.50e-07,13 | |||
|ontology_enrichment_development_v019=CL:0002057;1.06e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.45e-16!102;UBERON:0003061!1.45e-16!102;UBERON:0002193!4.41e-15!112;UBERON:0002371!1.17e-13!80;UBERON:0001474!1.05e-11!86;UBERON:0002405!1.12e-09!115;UBERON:0003081!4.91e-09!216;UBERON:0004119!2.17e-08!169;UBERON:0000925!2.17e-08!169;UBERON:0006595!2.17e-08!169;UBERON:0004765!2.29e-08!101;UBERON:0001434!2.29e-08!101;UBERON:0001004!5.79e-07!72 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.77e-16,98;UBERON:0003061,6.77e-16,98;UBERON:0002193,2.02e-14,108;UBERON:0002371,5.11e-13,76;UBERON:0002405,3.56e-11,93;UBERON:0001474,4.44e-11,82;UBERON:0004765,3.64e-09,90;UBERON:0004119,2.00e-07,160;UBERON:0000925,2.00e-07,160;UBERON:0006595,2.00e-07,160;UBERON:0003081,5.59e-07,203;UBERON:0001434,7.15e-07,100 | |||
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| ||
|short_description=p1@ARRDC1 | |||
}} | }} |
Latest revision as of 17:33, 16 September 2015
Short description: | p1@ARRDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARRDC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000431925, ENST00000461627, ENST00000483563_5end |
EntrezGene: | ARRDC1 |
HGNC: | 28633 |
UniProt: | Q5T371F2Z3I4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 2.91e-17 | 72 |
epithelial cell | 1.22e-16 | 253 |
myeloid cell | 3.22e-16 | 108 |
common myeloid progenitor | 3.22e-16 | 108 |
monopoietic cell | 3.54e-16 | 59 |
monocyte | 3.54e-16 | 59 |
monoblast | 3.54e-16 | 59 |
promonocyte | 3.54e-16 | 59 |
macrophage dendritic cell progenitor | 1.14e-15 | 61 |
granulocyte monocyte progenitor cell | 1.69e-15 | 67 |
defensive cell | 4.13e-15 | 48 |
phagocyte | 4.13e-15 | 48 |
myeloid lineage restricted progenitor cell | 7.32e-14 | 66 |
hematopoietic stem cell | 1.79e-13 | 168 |
hematopoietic cell | 2.86e-13 | 177 |
hematopoietic oligopotent progenitor cell | 5.50e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.50e-13 | 161 |
classical monocyte | 5.66e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.66e-13 | 42 |
leukocyte | 4.58e-12 | 136 |
nongranular leukocyte | 2.32e-11 | 115 |
endo-epithelial cell | 5.72e-11 | 42 |
endodermal cell | 7.17e-10 | 58 |
hematopoietic lineage restricted progenitor cell | 1.08e-09 | 120 |
intermediate monocyte | 6.89e-07 | 9 |
CD14-positive, CD16-positive monocyte | 6.89e-07 | 9 |
respiratory epithelial cell | 8.50e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.77e-16 | 98 |
blood island | 6.77e-16 | 98 |
hemolymphoid system | 2.02e-14 | 108 |
bone marrow | 5.11e-13 | 76 |
immune system | 3.56e-11 | 93 |
bone element | 4.44e-11 | 82 |
skeletal element | 3.64e-09 | 90 |
endoderm-derived structure | 2.00e-07 | 160 |
endoderm | 2.00e-07 | 160 |
presumptive endoderm | 2.00e-07 | 160 |
lateral plate mesoderm | 5.59e-07 | 203 |
skeletal system | 7.15e-07 | 100 |