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{{f5samples
{{f5samples
|id=FF:10423-106C9
|DRA_sample_Accession=CAGE@SAMD00005371
|name=choriocarcinoma cell line:BeWo
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005371
|sample_id=10423
|accession_numbers=CAGE;DRX007849;DRR008721;DRZ000146;DRZ001531;DRZ011496;DRZ012881
|rna_tube_id=106C9
|accession_numbers_RNASeq=RNA-Seq;DRX057123;DRR062882;DRZ007958
|rna_box=106
|rna_position=C9
|sample_cell_lot=
|sample_cell_catalog=RCB1644
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=placenta
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=fetal
|sample_ethnicity=
|rna_rin=9.9
|rna_od260/230=1.53
|rna_od260/280=2.07
|sample_cell_type=trophoblast cell
|sample_cell_line=BeWo
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=choriocarcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=72.6381
|rna_concentration=1.61418
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10740,LSID692,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000039,CL:0000144,CL:0000255,CL:0000548,CL:0000586
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:3095,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575,FF:0100798
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.73!540.16!GATA2;;chr2:16080659..16080685,+!p1@MYCN!2.35!224.48!MYCN;;chr10:8096631..8096660,+!p1@GATA3!2.21!191.36!GATA3;;chr9:127358120..127358170,-!p3@NR6A1!2.17!147.47!NR6A1;;chr17:48072574..48072597,-!p1@DLX3!2.16!144.96!DLX3;;chr10:8096772..8096787,+!p2@GATA3!2.10!146.48!GATA3;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.10!123.78!PEG3;;chr3:12330560..12330579,+!p1@PPARG!2.05!126.20!PPARG;;chr6:53013620..53013644,-!p1@GCM1!2.01!100.53!GCM1;;chr20:55204351..55204377,+!p1@TFAP2C!2.00!124.31!TFAP2C;;chr20:31350184..31350200,+!p1@DNMT3B!1.89!154.38!DNMT3B;;chr5:174151612..174151633,+!p2@MSX2!1.86!71.81!MSX2;;chr5:174151553..174151610,+!p1@MSX2!1.82!105.55!MSX2;;chr7:96654133..96654150,-!p1@DLX5!1.82!65.34!DLX5;;chr5:2751762..2751784,-!p1@IRX2!1.79!61.21!IRX2;;chr2:10091815..10091864,+!p1@GRHL1!1.78!78.27!GRHL1;;chr4:188916918..188916942,+!p1@ZFP42!1.78!59.60!ZFP42;;chr1:201979743..201979762,+!p1@ELF3!1.68!47.30!ELF3;;chr2:16081912..16081931,+!p2@MYCN!1.68!46.94!MYCN;;chr12:19556998..19557013,+!p6@AEBP2!1.68!46.40!AEBP2;;chr17:45928521..45928539,-!p1@SP6!1.60!38.51!SP6;;chr17:80797886..80797906,-!p1@ZNF750!1.59!38.06!ZNF750;;chr19:33793430..33793447,-!p1@CEBPA!1.53!132.30!CEBPA;;chr2:122042770..122042785,-!p1@TFCP2L1!1.51!31.50!TFCP2L1;;chr2:74229812..74229867,+!p1@TET3!1.44!65.88!TET3;;chr2:88752207..88752218,-!p1@FOXI3!1.40!24.06!FOXI3;;chr7:26191809..26191890,+!p1@NFE2L3!1.39!113.45!NFE2L3;;chr6:29648890..29648944,-!p1@ZFP57!1.39!23.79!ZFP57;;chr6:41703952..41703994,-!p4@TFEB!1.39!23.79!TFEB;;chr10:8095593..8095625,+!p3@GATA3!1.37!26.30!GATA3;;chr19:22817119..22817145,+!p1@ZNF492!1.34!34.65!ZNF492;;chr1:209979467..209979494,-!p1@IRF6!1.34!23.25!IRF6;;chr11:65554528..65554546,+!p1@OVOL1!1.31!19.57!OVOL1;;chr21:45681774..45681821,-!p1@DNMT3L!1.31!19.39!DNMT3L;;chr11:2292226..2292270,-!p1@ASCL2!1.31!19.30!ASCL2;;chr12:19556960..19556982,+!p10@AEBP2!1.30!18.94!AEBP2;;chr19:926001..926046,+!p1@ARID3A!1.29!63.01!ARID3A;;chr5:2751785..2751808,-!p2@IRX2!1.29!18.49!IRX2;;chr10:70320074..70320106,+!p1@TET1!1.28!36.08!TET1;;chr21:45681737..45681760,-!p2@DNMT3L!1.28!17.95!DNMT3L;;chr19:929027..929051,+!p4@ARID3A!1.27!17.50!ARID3A;;chr2:46524897..46524911,+!p2@EPAS1!1.26!47.03!EPAS1;;chrX:70319128..70319142,+!p3@FOXO4!1.26!17.23!FOXO4;;chr1:41827095..41827155,+!p1@FOXO6!1.25!22.89!FOXO6;;chr2:16082155..16082169,+!p3@MYCN!1.25!16.61!MYCN;;chr6:10419768..10419819,-!p6@TFAP2A!1.24!16.52!TFAP2A;;chr7:96634878..96634900,+!p2@DLX6!1.22!15.62!DLX6;;chr17:7493405..7493419,-!p1@SOX15!1.22!15.44!SOX15;;chr1:201979703..201979721,+!p2@ELF3!1.21!15.08!ELF3;;chr7:96634908..96634923,+!p4@DLX6!1.20!14.90!DLX6;;chr1:204042233..204042249,+!p1@SOX13!1.19!89.67!SOX13;;chr19:926055..926068,+!p2@ARID3A!1.19!31.42!ARID3A;;chrX:70316005..70316034,+!p2@FOXO4!1.18!25.76!FOXO4;;chr6:10419884..10419898,-!p11@TFAP2A!1.18!14.27!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!1.18!14.00!TFAP2A;;chr7:96635178..96635181,+!p1@DLX6!1.16!13.55!DLX6;;chr1:42801540..42801562,-!p4@FOXJ3!1.16!13.55!FOXJ3;;chr1:40367530..40367597,-!p1@MYCL1!1.15!23.70!MYCL1;;chr14:73360799..73360817,-!p1@DPF3!1.14!44.61!DPF3;;chr1:247171316..247171336,-!p3@ZNF695!1.14!19.12!ZNF695;;chr10:8097321..8097348,+!p4@GATA3!1.14!12.75!GATA3;;chrX:70316101..70316112,+!p5@FOXO4!1.14!12.75!FOXO4;;chr19:2867325..2867348,+!p1@ZNF556!1.13!12.57!ZNF556;;chr15:96869511..96869525,+!p16@NR2F2!1.12!13.37!NR2F2;;chr2:10091922..10091935,+!p3@GRHL1!1.12!12.21!GRHL1;;chr3:141719209..141719215,-!p10@TFDP2!1.09!11.22!TFDP2;;chr22:22874610..22874616,-!p1@ZNF280A!1.08!11.13!ZNF280A;;chr11:65554563..65554576,+!p2@OVOL1!1.07!10.68!OVOL1;;chr10:114710098..114710130,+!p2@TCF7L2!1.05!77.28!TCF7L2;;chr20:50159198..50159299,-!p1@NFATC2!1.05!14.90!NFATC2;;chr17:48046543..48046575,+!p2@DLX4!1.05!10.32!DLX4;;chr1:247171347..247171366,-!p2@ZNF695!1.04!18.40!ZNF695;;chr2:16080635..16080650,+!p4@MYCN!1.04!10.05!MYCN;;chrY:21906594..21906622,-!p1@KDM5D!1.04!10.05!KDM5D;;chr1:40367668..40367684,-!p2@MYCL1!1.03!9.69!MYCL1;;chr1:935398..935465,-!p2@HES4!1.02!19.93!HES4;;chr11:12696071..12696086,+!p3@TEAD1!1.02!12.48!TEAD1;;chr19:48773337..48773339,+!p2@ZNF114!1.02!9.51!ZNF114;;chr6:53013605..53013616,-!p2@GCM1!1.02!9.42!GCM1;;chr6:34204672..34204692,+!p1@HMGA1!1.01!1042.89!HMGA1;;chr17:48045917..48045977,+!p1@DLX4!1.01!9.33!DLX4;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.25!IRF8;;chr5:1887070..1887114,-!p1@IRX4!1.01!9.16!IRX4;;chr3:32023232..32023273,+!p1@ZNF860!0.99!12.57!ZNF860;;chr17:48049323..48049330,+!p6@DLX4!0.99!8.80!DLX4;;chr20:50418972..50419029,-!p1@SALL4!0.99!8.71!SALL4;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.98!83.92!ZNF595;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!0.98!31.86!ZNF670;;chr20:18038521..18038571,-!p1@OVOL2!0.98!8.62!OVOL2;;chr8:102504651..102504683,+!p1@GRHL2!0.98!8.62!GRHL2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.97!18.40!SOHLH2;;chr3:141747441..141747452,-!p4@TFDP2!0.97!11.67!TFDP2;;chr3:141747950..141748004,-!p7@TFDP2!0.97!8.44!TFDP2;;chrX:131547625..131547644,-!p4@MBNL3!0.97!8.35!MBNL3;;chr19:925727..925784,+!p3@ARID3A!0.96!17.68!ARID3A;;chr1:24645921..24645973,+!p2@GRHL3!0.96!8.17!GRHL3;;chr3:189507432..189507459,+!p1@TP63!0.95!7.99!TP63;;chr5:174151648..174151659,+!p3@MSX2!0.94!7.81!MSX2;;chr2:10091881..10091890,+!p5@GRHL1!0.94!7.63!GRHL1;;chrX:70316072..70316085,+!p4@FOXO4!0.94!7.63!FOXO4;;chr1:204042275..204042286,+!p4@SOX13!0.93!12.03!SOX13;;chr8:102504979..102505010,+!p2@GRHL2!0.93!7.54!GRHL2;;chr11:12696102..12696113,+!p5@TEAD1!0.92!7.36!TEAD1;;chr2:42795745..42795824,+!p1@MTA3!0.91!68.57!MTA3;;chr3:141747459..141747475,-!p1@TFDP2!0.91!62.38!TFDP2;;chr19:20011775..20011800,+!p2@ZNF93!0.91!13.10!ZNF93;;chr1:6479968..6479986,-!p1@HES2!0.91!7.18!HES2;;chr19:58326246..58326262,-!p2@ZNF552!0.90!16.96!ZNF552;;chr18:19749386..19749404,+!p2@GATA6!0.90!10.05!GATA6;;chr19:12163769..12163798,-!p1@ZNF878!0.90!9.25!ZNF878;;chr20:45142154..45142227,-!p1@ZNF334!0.89!13.82!ZNF334;;chr19:21265028..21265052,+!p2@ZNF714!0.89!12.57!ZNF714;;chr19:53496768..53496799,-!p1@ZNF702P!0.89!10.86!ZNF702P;;chr19:53360870..53360873,-!p1@ZNF468!0.88!25.40!ZNF468;;chr4:57547454..57547469,-!p1@HOPX!0.88!6.55!HOPX;;chr2:25475120..25475176,-!p2@DNMT3A!0.87!8.89!DNMT3A;;chr6:36355513..36355578,-!p2@ETV7!0.87!8.26!ETV7;;chr11:2291814..2291825,-!p2@ASCL2!0.87!6.46!ASCL2;;chr10:8097295..8097320,+!p6@GATA3!0.86!6.28!GATA3;;chr12:3068634..3068656,+!p5@TEAD4!0.86!6.19!TEAD4;;chr3:141868293..141868355,-!p2@TFDP2!0.85!56.64!TFDP2;;chr7:156803329..156803362,-!p1@MNX1!0.85!6.01!MNX1;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.01!ZFY;;chr18:19749541..19749557,+!p1@GATA6!0.84!19.48!GATA6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.83!54.48!PPP1R13L;;chr8:80679993..80680011,-!p1@HEY1!0.83!8.71!HEY1;;chr19:17356697..17356762,-!p1@NR2F6!0.82!83.47!NR2F6;;chr19:23433144..23433204,-!p1@ZNF724P!0.82!26.66!ZNF724P;;chr15:41913690..41913753,+!p2@MGA!0.82!14.18!MGA;;chr1:24645832..24645853,+!p1@GRHL3!0.82!5.56!GRHL3;;chr5:134369879..134369898,-!p2@PITX1!0.82!5.56!PITX1;;chr11:31832658..31832681,-!p1@PAX6!0.82!5.56!PAX6;;chr6:20402102..20402152,+!p1@E2F3!0.81!24.06!E2F3;;chr3:12329358..12329393,+!p3@PPARG!0.81!14.09!PPARG;;chr2:46524878..46524891,+!p3@EPAS1!0.81!9.87!EPAS1;;chr12:6798731..6798751,-!p4@ZNF384!0.81!8.71!ZNF384;;chr3:128205876..128205904,-!p4@GATA2!0.81!5.48!GATA2;;chr19:21264991..21265026,+!p1@ZNF714!0.80!37.25!ZNF714;;chr19:12075844..12075880,+!p3@ZNF763!0.80!9.33!ZNF763;;chrX:131547596..131547609,-!p10@MBNL3!0.80!5.30!MBNL3;;chr6:21593973..21593988,+!p1@SOX4!0.79!202.04!SOX4;;chr19:54024251..54024305,+!p4@ZNF331!0.79!8.71!ZNF331;;chr11:19263160..19263176,-!p1@E2F8!0.79!6.28!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.21!POU4F1;;chr3:147111198..147111225,+!p4@ZIC1!0.79!5.21!ZIC1;;chr2:63277948..63277974,+!p1@OTX1!0.79!5.12!OTX1;;chr3:12329397..12329433,+!p2@PPARG!0.78!12.03!PPARG;;chr19:23299814..23299844,+!p1@ZNF730!0.78!6.28!ZNF730;;chr19:17356189..17356221,-!p2@NR2F6!0.77!8.44!NR2F6;;chr18:19749353..19749367,+!p4@GATA6!0.77!4.94!GATA6;;chr10:70320041..70320065,+!p2@TET1!0.77!4.94!TET1;;chr20:50792507..50792525,-!p12@ZFP64!0.77!4.85!ZFP64;;chr7:96634850..96634874,+!p3@DLX6!0.77!4.85!DLX6;;chr19:17356436..17356481,-!p3@NR2F6!0.76!8.53!NR2F6;;chr12:2986275..2986363,-!p1@FOXM1!0.75!51.79!FOXM1;;chr3:128206762..128206781,-!p2@GATA2!0.75!31.42!GATA2;;chr12:3068544..3068597,+!p1@TEAD4!0.75!30.25!TEAD4;;chr19:53289995..53290050,-!p1@ZNF600!0.75!20.64!ZNF600;;chr10:8097468..8097478,+!p16@GATA3!0.75!4.67!GATA3;;chr19:57352109..57352153,-!p2@ZIM2!0.75!4.58!ZIM2;;chr6:21597765..21597779,+!p2@SOX4!0.74!40.21!SOX4;;chr12:80084737..80084763,-!p3@PAWR!0.74!18.31!PAWR;;chr5:1887052..1887065,-!p2@IRX4!0.74!4.49!IRX4;;chr11:47279504..47279563,+!p1@NR1H3!0.73!10.77!NR1H3;;chr7:27135591..27135658,-!p1@HOXA1!0.73!9.07!HOXA1;;chr7:35293685..35293718,-!p1@TBX20!0.73!4.40!TBX20;;chr2:10091783..10091811,+!p2@GRHL1!0.73!4.40!GRHL1;;chr2:88752231..88752245,-!p2@FOXI3!0.73!4.40!FOXI3;;chr14:55493763..55493824,-!p1@WDHD1!0.72!35.81!WDHD1;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.22!DLX5;;chr9:124976185..124976212,-!p4@LHX6!0.72!4.22!LHX6;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.22!SIM2;;chr19:22034809..22034878,-!p2@ZNF43!0.71!15.89!ZNF43;;chr19:12512015..12512044,-!p2@ZNF799!0.71!6.37!ZNF799;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.11!KLF5;;chr19:11849700..11849803,-!p1@ZNF823!0.70!21.72!ZNF823;;chr1:153940354..153940395,+!p1@CREB3L4!0.70!17.95!CREB3L4;;chr19:20011744..20011770,+!p1@ZNF93!0.70!17.41!ZNF93;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.70!13.37!ZNF321P;;chr18:3449527..3449582,+!p6@TGIF1!0.70!8.17!TGIF1;;chr14:75988771..75988826,+!p1@BATF!0.70!5.56!BATF;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.21!ASH2L;;chr3:126076242..126076257,-!p1@KLF15!0.70!5.21!KLF15;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.69!16.52!HNRPK;;chr2:70314240..70314256,+!p4@PCBP1!0.69!8.71!PCBP1;;chr12:54785074..54785122,-!p2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|fonse_cell_line=FF:0101575
|fonse_cell_line=FF:0101575
|fonse_cell_line_closure=FF:0101575
|fonse_cell_line_closure=FF:0101575
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
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|name=choriocarcinoma cell line:BeWo
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|rna_box=106
|rna_catalog_number=
|rna_concentration=1.61418
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.53
|rna_od260/280=2.07
|rna_position=C9
|rna_rin=9.9
|rna_sample_type=total RNA
|rna_tube_id=106C9
|rna_weight_ug=72.6381
|rnaseq_library_id=RDhi10066
|sample_age=fetal
|sample_category=cell lines
|sample_cell_catalog=RCB1644
|sample_cell_line=BeWo
|sample_cell_lot=
|sample_cell_type=trophoblast cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=fetus
|sample_disease=choriocarcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.48747609553709e-270!GO:0043226;organelle;2.60826844785648e-228!GO:0043229;intracellular organelle;5.34434853208982e-228!GO:0043231;intracellular membrane-bound organelle;3.59098872669738e-226!GO:0043227;membrane-bound organelle;5.14173057507984e-226!GO:0005737;cytoplasm;1.89026202157787e-170!GO:0044422;organelle part;2.19315696322755e-158!GO:0044446;intracellular organelle part;5.58160350210372e-157!GO:0044444;cytoplasmic part;1.53267999059905e-122!GO:0005634;nucleus;1.53315231206278e-110!GO:0044237;cellular metabolic process;1.90273959587057e-110!GO:0044238;primary metabolic process;1.50090419145403e-109!GO:0032991;macromolecular complex;3.539829020778e-108!GO:0043170;macromolecule metabolic process;8.11818396275622e-102!GO:0030529;ribonucleoprotein complex;2.9432577068949e-94!GO:0044428;nuclear part;1.69748954354571e-85!GO:0003723;RNA binding;1.14924362585324e-83!GO:0043233;organelle lumen;5.30970039090761e-83!GO:0031974;membrane-enclosed lumen;5.30970039090761e-83!GO:0005739;mitochondrion;1.42224747084416e-68!GO:0005515;protein binding;3.21980111336729e-66!GO:0043283;biopolymer metabolic process;2.47087498874145e-62!GO:0006412;translation;8.29124605402259e-59!GO:0010467;gene expression;2.35525986147652e-58!GO:0005840;ribosome;1.15425522692998e-57!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02539603363136e-56!GO:0006396;RNA processing;4.79104842543153e-56!GO:0043234;protein complex;1.71558967008347e-54!GO:0031981;nuclear lumen;1.27536956853785e-52!GO:0003735;structural constituent of ribosome;3.0326629775234e-49!GO:0019538;protein metabolic process;8.206876128994e-48!GO:0031090;organelle membrane;2.47273024178787e-46!GO:0015031;protein transport;6.49713437071315e-46!GO:0016043;cellular component organization and biogenesis;4.19950051687297e-45!GO:0033036;macromolecule localization;4.25189545254809e-45!GO:0033279;ribosomal subunit;1.96222401747985e-44!GO:0009058;biosynthetic process;4.00484933666345e-44!GO:0016071;mRNA metabolic process;5.75012041169687e-44!GO:0044249;cellular biosynthetic process;1.4747496975932e-43!GO:0009059;macromolecule biosynthetic process;5.38935756302464e-43!GO:0044260;cellular macromolecule metabolic process;2.08691464187707e-42!GO:0044429;mitochondrial part;3.10812443436134e-42!GO:0044267;cellular protein metabolic process;6.79290885777654e-42!GO:0043228;non-membrane-bound organelle;3.19291113313086e-41!GO:0043232;intracellular non-membrane-bound organelle;3.19291113313086e-41!GO:0045184;establishment of protein localization;3.77855744273314e-41!GO:0003676;nucleic acid binding;1.24492051453514e-40!GO:0008104;protein localization;1.55091265032982e-40!GO:0008380;RNA splicing;2.18515208398772e-40!GO:0006397;mRNA processing;2.20340886494535e-39!GO:0031967;organelle envelope;9.68580581716174e-39!GO:0031975;envelope;2.35548526474574e-38!GO:0006259;DNA metabolic process;4.67078374986954e-38!GO:0065003;macromolecular complex assembly;1.50583895841473e-37!GO:0046907;intracellular transport;1.35875038513831e-35!GO:0006996;organelle organization and biogenesis;1.85212465638896e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.43751835464018e-35!GO:0022607;cellular component assembly;1.74111014618752e-34!GO:0005654;nucleoplasm;5.72545597234487e-33!GO:0005829;cytosol;6.99023955862056e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.85963278311304e-32!GO:0007049;cell cycle;1.7389999808318e-31!GO:0006886;intracellular protein transport;5.28512887299222e-30!GO:0016070;RNA metabolic process;1.81804043576898e-29!GO:0005681;spliceosome;2.51249338102803e-29!GO:0000166;nucleotide binding;2.05357592679994e-27!GO:0044445;cytosolic part;4.95502636837525e-26!GO:0005740;mitochondrial envelope;6.3871510448326e-26!GO:0019866;organelle inner membrane;7.01284272611202e-26!GO:0044451;nucleoplasm part;8.87887743169575e-26!GO:0006974;response to DNA damage stimulus;3.42172961699501e-25!GO:0031966;mitochondrial membrane;6.61309963088428e-24!GO:0005743;mitochondrial inner membrane;1.38938342397992e-23!GO:0015935;small ribosomal subunit;2.5100111765318e-23!GO:0006119;oxidative phosphorylation;8.60676822762062e-23!GO:0022402;cell cycle process;8.6408993636884e-23!GO:0005694;chromosome;9.4019045688096e-23!GO:0016874;ligase activity;1.46574650047091e-22!GO:0051649;establishment of cellular localization;3.06091333100812e-22!GO:0015934;large ribosomal subunit;3.38920525883716e-22!GO:0006281;DNA repair;3.90607761399904e-22!GO:0051641;cellular localization;5.15903638078381e-22!GO:0000278;mitotic cell cycle;1.83025624841225e-21!GO:0022618;protein-RNA complex assembly;2.57443699498109e-21!GO:0044455;mitochondrial membrane part;2.72891395102854e-21!GO:0044427;chromosomal part;1.64884485326575e-20!GO:0032553;ribonucleotide binding;3.92231595084209e-20!GO:0032555;purine ribonucleotide binding;3.92231595084209e-20!GO:0006512;ubiquitin cycle;9.28747826669771e-20!GO:0005730;nucleolus;1.01335655918072e-19!GO:0031980;mitochondrial lumen;1.23636272074445e-19!GO:0005759;mitochondrial matrix;1.23636272074445e-19!GO:0006457;protein folding;2.11095548683247e-19!GO:0022403;cell cycle phase;3.90174407707183e-19!GO:0017076;purine nucleotide binding;6.19610328477612e-19!GO:0012505;endomembrane system;6.72861833963304e-19!GO:0005524;ATP binding;1.17020803246825e-18!GO:0017111;nucleoside-triphosphatase activity;3.52353847479454e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;3.7346127886119e-18!GO:0016462;pyrophosphatase activity;4.601592677015e-18!GO:0051301;cell division;5.56842496780084e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.70057649791701e-18!GO:0009719;response to endogenous stimulus;7.01363616694674e-18!GO:0032559;adenyl ribonucleotide binding;7.6642184619466e-18!GO:0044265;cellular macromolecule catabolic process;8.94699488380888e-18!GO:0008134;transcription factor binding;1.94404990824043e-17!GO:0008135;translation factor activity, nucleic acid binding;1.94404990824043e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.08857587935211e-17!GO:0000087;M phase of mitotic cell cycle;8.01541642919119e-17!GO:0051276;chromosome organization and biogenesis;8.09698431086566e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.04567184966499e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.26315067163202e-16!GO:0005761;mitochondrial ribosome;1.50229819589977e-16!GO:0000313;organellar ribosome;1.50229819589977e-16!GO:0007067;mitosis;1.62282867346106e-16!GO:0030554;adenyl nucleotide binding;1.79150946414477e-16!GO:0019941;modification-dependent protein catabolic process;1.83406355713381e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.83406355713381e-16!GO:0043285;biopolymer catabolic process;2.1520374518e-16!GO:0006605;protein targeting;2.36298470427201e-16!GO:0044257;cellular protein catabolic process;2.470237835491e-16!GO:0048770;pigment granule;3.19912898259201e-16!GO:0042470;melanosome;3.19912898259201e-16!GO:0000279;M phase;9.03950970014534e-16!GO:0005746;mitochondrial respiratory chain;1.25939530611266e-15!GO:0006260;DNA replication;1.28503476628709e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.55207506563584e-15!GO:0042623;ATPase activity, coupled;1.55237348863617e-15!GO:0051186;cofactor metabolic process;1.64270219712823e-15!GO:0009057;macromolecule catabolic process;1.98434395303554e-15!GO:0005783;endoplasmic reticulum;2.20691008950107e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.50164022334827e-15!GO:0000375;RNA splicing, via transesterification reactions;2.50164022334827e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.50164022334827e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.86619528869312e-15!GO:0044432;endoplasmic reticulum part;3.13405372633562e-15!GO:0016887;ATPase activity;3.9065948042667e-15!GO:0004386;helicase activity;5.68146913439437e-15!GO:0031965;nuclear membrane;1.16634062045913e-14!GO:0044453;nuclear membrane part;1.73797916517709e-14!GO:0042254;ribosome biogenesis and assembly;1.77491694725645e-14!GO:0044248;cellular catabolic process;1.92585725522068e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.14220721463919e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.43005345919821e-14!GO:0003954;NADH dehydrogenase activity;2.43005345919821e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.43005345919821e-14!GO:0051082;unfolded protein binding;3.18052548153009e-14!GO:0005794;Golgi apparatus;3.95964252926692e-14!GO:0030163;protein catabolic process;5.18712800462829e-14!GO:0050657;nucleic acid transport;1.06130411101347e-13!GO:0051236;establishment of RNA localization;1.06130411101347e-13!GO:0050658;RNA transport;1.06130411101347e-13!GO:0006413;translational initiation;1.23466768256387e-13!GO:0005635;nuclear envelope;1.26160987705553e-13!GO:0006403;RNA localization;1.69932111019896e-13!GO:0016604;nuclear body;2.34177064206991e-13!GO:0003743;translation initiation factor activity;4.23950858113971e-13!GO:0043412;biopolymer modification;5.076632086403e-13!GO:0005643;nuclear pore;5.68569430615497e-13!GO:0006732;coenzyme metabolic process;7.92443523909123e-13!GO:0006913;nucleocytoplasmic transport;9.55321048788848e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.1817986332402e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.32380455374987e-12!GO:0042773;ATP synthesis coupled electron transport;1.32380455374987e-12!GO:0065002;intracellular protein transport across a membrane;1.66350917492262e-12!GO:0048193;Golgi vesicle transport;1.78173540550711e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.10994581527866e-12!GO:0006446;regulation of translational initiation;2.29220753936129e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.52162605495134e-12!GO:0045271;respiratory chain complex I;2.52162605495134e-12!GO:0005747;mitochondrial respiratory chain complex I;2.52162605495134e-12!GO:0008026;ATP-dependent helicase activity;2.62520227083898e-12!GO:0006399;tRNA metabolic process;2.74681868565253e-12!GO:0051169;nuclear transport;2.94081187011683e-12!GO:0006461;protein complex assembly;3.82682292006214e-12!GO:0006323;DNA packaging;3.98756148279152e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.31301513017622e-12!GO:0051028;mRNA transport;1.22537896555226e-11!GO:0016607;nuclear speck;1.31325324793901e-11!GO:0006366;transcription from RNA polymerase II promoter;1.32097696595733e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.43885638311496e-11!GO:0046930;pore complex;5.5283143191946e-11!GO:0008565;protein transporter activity;6.76697551297566e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.23539859272601e-11!GO:0000785;chromatin;1.05229589877217e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22715322797778e-10!GO:0003712;transcription cofactor activity;1.62471389777282e-10!GO:0006464;protein modification process;1.79168909640374e-10!GO:0016192;vesicle-mediated transport;1.90663791135298e-10!GO:0005789;endoplasmic reticulum membrane;1.93081933305533e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.48693573621166e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.98855596573572e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.98855596573572e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.98855596573572e-10!GO:0043038;amino acid activation;3.3375092080533e-10!GO:0006418;tRNA aminoacylation for protein translation;3.3375092080533e-10!GO:0043039;tRNA aminoacylation;3.3375092080533e-10!GO:0051726;regulation of cell cycle;4.13077311835417e-10!GO:0000074;regulation of progression through cell cycle;4.40199087039717e-10!GO:0008639;small protein conjugating enzyme activity;4.52746709036542e-10!GO:0009259;ribonucleotide metabolic process;8.60311532023097e-10!GO:0004842;ubiquitin-protein ligase activity;9.38853525336077e-10!GO:0006364;rRNA processing;1.1784461079497e-09!GO:0019787;small conjugating protein ligase activity;1.32382968676845e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.48078338747046e-09!GO:0043687;post-translational protein modification;1.70176169981239e-09!GO:0015986;ATP synthesis coupled proton transport;1.80746747963459e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.80746747963459e-09!GO:0016072;rRNA metabolic process;1.97009635372093e-09!GO:0009150;purine ribonucleotide metabolic process;2.66902818220943e-09!GO:0005793;ER-Golgi intermediate compartment;2.85224008811908e-09!GO:0006163;purine nucleotide metabolic process;2.99426925171356e-09!GO:0051188;cofactor biosynthetic process;7.08328713861091e-09!GO:0009260;ribonucleotide biosynthetic process;7.08328713861091e-09!GO:0000775;chromosome, pericentric region;7.11162604189988e-09!GO:0006333;chromatin assembly or disassembly;7.8859160909513e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.42892321398277e-09!GO:0050794;regulation of cellular process;9.29722996614085e-09!GO:0009055;electron carrier activity;9.71356426984589e-09!GO:0006164;purine nucleotide biosynthetic process;1.00419466022298e-08!GO:0017038;protein import;1.62293570810113e-08!GO:0065004;protein-DNA complex assembly;1.75594468640941e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.83888020285579e-08!GO:0016469;proton-transporting two-sector ATPase complex;2.0541869267264e-08!GO:0005667;transcription factor complex;2.09411618356946e-08!GO:0019222;regulation of metabolic process;2.10845030222373e-08!GO:0043566;structure-specific DNA binding;2.14267443462907e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.14407618812833e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.14407618812833e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.17753458663752e-08!GO:0009141;nucleoside triphosphate metabolic process;3.45332474327913e-08!GO:0006754;ATP biosynthetic process;3.61488037791097e-08!GO:0006753;nucleoside phosphate metabolic process;3.61488037791097e-08!GO:0003697;single-stranded DNA binding;3.63973207317283e-08!GO:0009056;catabolic process;3.75630760429614e-08!GO:0006752;group transfer coenzyme metabolic process;4.259183022383e-08!GO:0012501;programmed cell death;5.17060806595763e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.29048218868659e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.29048218868659e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.42479734962491e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.42479734962491e-08!GO:0009060;aerobic respiration;5.57789887791128e-08!GO:0046034;ATP metabolic process;5.72478609511728e-08!GO:0019829;cation-transporting ATPase activity;6.47571730342617e-08!GO:0032446;protein modification by small protein conjugation;6.58620688106636e-08!GO:0016568;chromatin modification;6.78732717867332e-08!GO:0006915;apoptosis;6.82783039484183e-08!GO:0016881;acid-amino acid ligase activity;7.29758656687547e-08!GO:0051329;interphase of mitotic cell cycle;1.06219614617627e-07!GO:0016567;protein ubiquitination;1.06219614617627e-07!GO:0003713;transcription coactivator activity;1.53829023535525e-07!GO:0009108;coenzyme biosynthetic process;1.53829023535525e-07!GO:0006261;DNA-dependent DNA replication;1.69436194205333e-07!GO:0007005;mitochondrion organization and biogenesis;2.05943710365658e-07!GO:0016563;transcription activator activity;2.0925532256146e-07!GO:0048475;coated membrane;2.15333906297591e-07!GO:0030117;membrane coat;2.15333906297591e-07!GO:0043623;cellular protein complex assembly;2.15778239734298e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.19891602897752e-07!GO:0016740;transferase activity;2.25868056052191e-07!GO:0051325;interphase;2.25868056052191e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.36182374194355e-07!GO:0005819;spindle;2.59640404710383e-07!GO:0000245;spliceosome assembly;3.24013761475882e-07!GO:0005788;endoplasmic reticulum lumen;3.46389496859743e-07!GO:0045333;cellular respiration;4.9076964683694e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.24524418306274e-07!GO:0006084;acetyl-CoA metabolic process;6.06605507068389e-07!GO:0016779;nucleotidyltransferase activity;6.28697163028251e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.32427480005329e-07!GO:0006099;tricarboxylic acid cycle;7.71120926762584e-07!GO:0046356;acetyl-CoA catabolic process;7.71120926762584e-07!GO:0008219;cell death;7.77807533712495e-07!GO:0016265;death;7.77807533712495e-07!GO:0051246;regulation of protein metabolic process;8.59759921377615e-07!GO:0006888;ER to Golgi vesicle-mediated transport;8.75696294642896e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.98018681827825e-07!GO:0031323;regulation of cellular metabolic process;9.58555160560644e-07!GO:0045259;proton-transporting ATP synthase complex;9.70572309073205e-07!GO:0016853;isomerase activity;1.01362043837247e-06!GO:0015630;microtubule cytoskeleton;1.15080572692383e-06!GO:0003724;RNA helicase activity;1.49013662761079e-06!GO:0005813;centrosome;1.77153309679471e-06!GO:0051170;nuclear import;1.78128914250914e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.83046504276745e-06!GO:0007051;spindle organization and biogenesis;2.02422628507605e-06!GO:0005768;endosome;2.20597369456612e-06!GO:0051168;nuclear export;3.22807747814895e-06!GO:0008094;DNA-dependent ATPase activity;3.22874274948884e-06!GO:0005815;microtubule organizing center;3.52495687124916e-06!GO:0004298;threonine endopeptidase activity;3.8049645087814e-06!GO:0005762;mitochondrial large ribosomal subunit;4.0048381088199e-06!GO:0000315;organellar large ribosomal subunit;4.0048381088199e-06!GO:0030120;vesicle coat;4.07820545728114e-06!GO:0030662;coated vesicle membrane;4.07820545728114e-06!GO:0006613;cotranslational protein targeting to membrane;4.38390400522995e-06!GO:0005657;replication fork;4.69773501416593e-06!GO:0006606;protein import into nucleus;4.8967800763529e-06!GO:0009109;coenzyme catabolic process;5.47878445101542e-06!GO:0044431;Golgi apparatus part;5.87719027101035e-06!GO:0006334;nucleosome assembly;6.23567166485198e-06!GO:0006350;transcription;7.57213847448788e-06!GO:0031497;chromatin assembly;8.34426272268678e-06!GO:0005770;late endosome;9.08656771729115e-06!GO:0000075;cell cycle checkpoint;1.03032868433093e-05!GO:0051187;cofactor catabolic process;1.32926704493418e-05!GO:0000151;ubiquitin ligase complex;1.44807187640089e-05!GO:0010468;regulation of gene expression;1.68115895219767e-05!GO:0006520;amino acid metabolic process;2.01071475002148e-05!GO:0003690;double-stranded DNA binding;2.02393142087555e-05!GO:0016363;nuclear matrix;2.35339589599628e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.46605139538877e-05!GO:0006793;phosphorus metabolic process;2.62774023346842e-05!GO:0006796;phosphate metabolic process;2.62774023346842e-05!GO:0019752;carboxylic acid metabolic process;2.84486877251925e-05!GO:0000314;organellar small ribosomal subunit;2.86054903794016e-05!GO:0005763;mitochondrial small ribosomal subunit;2.86054903794016e-05!GO:0016787;hydrolase activity;2.9553250514404e-05!GO:0006082;organic acid metabolic process;3.19505006784723e-05!GO:0016310;phosphorylation;3.80981588290881e-05!GO:0008186;RNA-dependent ATPase activity;3.82990201037908e-05!GO:0019899;enzyme binding;4.38177334455244e-05!GO:0003682;chromatin binding;4.50275736539749e-05!GO:0003899;DNA-directed RNA polymerase activity;4.76593589210895e-05!GO:0050789;regulation of biological process;5.10390131335704e-05!GO:0043021;ribonucleoprotein binding;6.25194288739715e-05!GO:0008168;methyltransferase activity;6.59845256915634e-05!GO:0051427;hormone receptor binding;6.75210837458024e-05!GO:0048471;perinuclear region of cytoplasm;6.87304496082417e-05!GO:0043069;negative regulation of programmed cell death;6.87304496082417e-05!GO:0005798;Golgi-associated vesicle;6.8950233617538e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.69244191276653e-05!GO:0007059;chromosome segregation;7.90198805435142e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.34897713385837e-05!GO:0016741;transferase activity, transferring one-carbon groups;9.08669569419212e-05!GO:0000776;kinetochore;9.29588697355912e-05!GO:0006916;anti-apoptosis;9.71200420079348e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.81481990936078e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000102810422184683!GO:0015980;energy derivation by oxidation of organic compounds;0.000103894904060128!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000103894904060128!GO:0043066;negative regulation of apoptosis;0.000105891710172894!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000110303316845478!GO:0006612;protein targeting to membrane;0.00011779667245006!GO:0004004;ATP-dependent RNA helicase activity;0.000119763939985658!GO:0009117;nucleotide metabolic process;0.000126476496683951!GO:0035257;nuclear hormone receptor binding;0.000135367232886739!GO:0016564;transcription repressor activity;0.00014423875815376!GO:0006414;translational elongation;0.000144318357668141!GO:0005773;vacuole;0.000158534476429741!GO:0008654;phospholipid biosynthetic process;0.000159482713052113!GO:0006818;hydrogen transport;0.000162475832508231!GO:0032774;RNA biosynthetic process;0.000170889511540476!GO:0044440;endosomal part;0.00017189516444155!GO:0010008;endosome membrane;0.00017189516444155!GO:0022890;inorganic cation transmembrane transporter activity;0.000186004340150078!GO:0000139;Golgi membrane;0.000192827430417741!GO:0016859;cis-trans isomerase activity;0.000206177628907117!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000215060358755332!GO:0006351;transcription, DNA-dependent;0.000228983655695562!GO:0042981;regulation of apoptosis;0.000261536990420176!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000263743978135617!GO:0043067;regulation of programmed cell death;0.00029600465279367!GO:0006405;RNA export from nucleus;0.000296248736239096!GO:0015992;proton transport;0.000313856389302601!GO:0006302;double-strand break repair;0.000325013731279234!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000343530313182167!GO:0005525;GTP binding;0.000362609922712131!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00036323276906138!GO:0015399;primary active transmembrane transporter activity;0.00036323276906138!GO:0003729;mRNA binding;0.000407606036654811!GO:0044452;nucleolar part;0.000413243528375036!GO:0006310;DNA recombination;0.000413243528375036!GO:0003684;damaged DNA binding;0.00041528932523777!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000439297994566448!GO:0033116;ER-Golgi intermediate compartment membrane;0.000459022481523318!GO:0030867;rough endoplasmic reticulum membrane;0.000480708652557764!GO:0003678;DNA helicase activity;0.000500322704818417!GO:0000059;protein import into nucleus, docking;0.000515221149323656!GO:0008033;tRNA processing;0.000518257800086277!GO:0031324;negative regulation of cellular metabolic process;0.000535311699007252!GO:0000049;tRNA binding;0.000542678039602379!GO:0005905;coated pit;0.00057719720799437!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000617384644131269!GO:0006383;transcription from RNA polymerase III promoter;0.00062263260248599!GO:0006839;mitochondrial transport;0.000625033947609173!GO:0006402;mRNA catabolic process;0.000653539964480206!GO:0007264;small GTPase mediated signal transduction;0.000688127695981833!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000708919929954249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000708919929954249!GO:0051052;regulation of DNA metabolic process;0.000761943663879717!GO:0031252;leading edge;0.000804807789816626!GO:0005048;signal sequence binding;0.000820813124969818!GO:0008652;amino acid biosynthetic process;0.000832455439035038!GO:0006417;regulation of translation;0.000837553888716524!GO:0006626;protein targeting to mitochondrion;0.000870746200157758!GO:0051920;peroxiredoxin activity;0.00089176952354385!GO:0045454;cell redox homeostasis;0.000912394502755105!GO:0005885;Arp2/3 protein complex;0.000926010232117361!GO:0000082;G1/S transition of mitotic cell cycle;0.000944733731881683!GO:0000323;lytic vacuole;0.000951400957554415!GO:0005764;lysosome;0.000951400957554415!GO:0005684;U2-dependent spliceosome;0.00101195920256676!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102034556821541!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102034556821541!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102034556821541!GO:0006519;amino acid and derivative metabolic process;0.00103384002366093!GO:0007088;regulation of mitosis;0.00104299450365649!GO:0048500;signal recognition particle;0.00107016573284601!GO:0007006;mitochondrial membrane organization and biogenesis;0.00111481502418558!GO:0007052;mitotic spindle organization and biogenesis;0.00113208177672321!GO:0043681;protein import into mitochondrion;0.00113208177672321!GO:0051789;response to protein stimulus;0.00113219452412484!GO:0006986;response to unfolded protein;0.00113219452412484!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00119041412379748!GO:0006091;generation of precursor metabolites and energy;0.00125721345159195!GO:0003677;DNA binding;0.00130561902063515!GO:0032508;DNA duplex unwinding;0.00136133126471766!GO:0032392;DNA geometric change;0.00136133126471766!GO:0019843;rRNA binding;0.00142880042194535!GO:0045449;regulation of transcription;0.00145058645790373!GO:0045786;negative regulation of progression through cell cycle;0.00145358265959698!GO:0016251;general RNA polymerase II transcription factor activity;0.00150861597454631!GO:0030118;clathrin coat;0.00154011824840442!GO:0000786;nucleosome;0.00158668006847303!GO:0006284;base-excision repair;0.00159314765517099!GO:0007093;mitotic cell cycle checkpoint;0.00159592060670757!GO:0042802;identical protein binding;0.00170077321130482!GO:0005791;rough endoplasmic reticulum;0.00170077321130482!GO:0006352;transcription initiation;0.00173799930815494!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00174429501158459!GO:0007010;cytoskeleton organization and biogenesis;0.00178067983566028!GO:0003746;translation elongation factor activity;0.00181918532811999!GO:0004674;protein serine/threonine kinase activity;0.00182104892428364!GO:0043284;biopolymer biosynthetic process;0.00188236494504472!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00197814979668382!GO:0051087;chaperone binding;0.00201071775566244!GO:0006401;RNA catabolic process;0.00211049575521303!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00212013118910829!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00212013118910829!GO:0006338;chromatin remodeling;0.00228922723047284!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00230974866363346!GO:0005637;nuclear inner membrane;0.00246008529734197!GO:0005769;early endosome;0.00249046837869087!GO:0006268;DNA unwinding during replication;0.00252574317534707!GO:0016197;endosome transport;0.00266654484470763!GO:0003714;transcription corepressor activity;0.00269205203089631!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00280313090560944!GO:0045047;protein targeting to ER;0.00280313090560944!GO:0030036;actin cytoskeleton organization and biogenesis;0.00283225720258492!GO:0046474;glycerophospholipid biosynthetic process;0.00301856743546476!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0030498359204305!GO:0032561;guanyl ribonucleotide binding;0.00330068354013758!GO:0019001;guanyl nucleotide binding;0.00330068354013758!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00330999122773772!GO:0008312;7S RNA binding;0.00352842843056835!GO:0030176;integral to endoplasmic reticulum membrane;0.00359620041397043!GO:0031988;membrane-bound vesicle;0.00365184183238279!GO:0042393;histone binding;0.0037345706307078!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00373495133267225!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0037437362927751!GO:0032259;methylation;0.00381325658845813!GO:0016023;cytoplasmic membrane-bound vesicle;0.00382719456500486!GO:0030119;AP-type membrane coat adaptor complex;0.00386489099430016!GO:0006289;nucleotide-excision repair;0.00387766023120228!GO:0000086;G2/M transition of mitotic cell cycle;0.00388079408710772!GO:0006891;intra-Golgi vesicle-mediated transport;0.00416566057228583!GO:0030133;transport vesicle;0.00416566057228583!GO:0051252;regulation of RNA metabolic process;0.00427323175803404!GO:0016044;membrane organization and biogenesis;0.00429291091286454!GO:0008234;cysteine-type peptidase activity;0.00429767794127936!GO:0046983;protein dimerization activity;0.00430783852675007!GO:0031982;vesicle;0.00437449080561103!GO:0009892;negative regulation of metabolic process;0.00439249112320167!GO:0006650;glycerophospholipid metabolic process;0.00448279167641174!GO:0030029;actin filament-based process;0.00456112573134387!GO:0043492;ATPase activity, coupled to movement of substances;0.00470283403021529!GO:0006730;one-carbon compound metabolic process;0.00473753149033784!GO:0046489;phosphoinositide biosynthetic process;0.00485109350450048!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00520027368519815!GO:0031072;heat shock protein binding;0.00520865431655769!GO:0030521;androgen receptor signaling pathway;0.00530392957715741!GO:0030384;phosphoinositide metabolic process;0.00542077033839269!GO:0030880;RNA polymerase complex;0.00565280401423573!GO:0031410;cytoplasmic vesicle;0.00568099001410549!GO:0006355;regulation of transcription, DNA-dependent;0.00575965571723402!GO:0006984;ER-nuclear signaling pathway;0.00575965571723402!GO:0008097;5S rRNA binding;0.00584688154964292!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00592616951444006!GO:0015002;heme-copper terminal oxidase activity;0.00592616951444006!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00592616951444006!GO:0004129;cytochrome-c oxidase activity;0.00592616951444006!GO:0065009;regulation of a molecular function;0.00593075844170554!GO:0030131;clathrin adaptor complex;0.00599758731549807!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00610140780084023!GO:0031326;regulation of cellular biosynthetic process;0.00610202659239272!GO:0007265;Ras protein signal transduction;0.00610374524696396!GO:0051101;regulation of DNA binding;0.00620169978724742!GO:0044262;cellular carbohydrate metabolic process;0.00624182077279227!GO:0045947;negative regulation of translational initiation;0.00627703481501049!GO:0000922;spindle pole;0.00627703481501049!GO:0003756;protein disulfide isomerase activity;0.00639866249117027!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00639866249117027!GO:0008610;lipid biosynthetic process;0.0064809631802468!GO:0009165;nucleotide biosynthetic process;0.00652919793547646!GO:0006611;protein export from nucleus;0.00655801491501511!GO:0000096;sulfur amino acid metabolic process;0.00657659266561501!GO:0030134;ER to Golgi transport vesicle;0.00675323970807975!GO:0030663;COPI coated vesicle membrane;0.00692558373670165!GO:0030126;COPI vesicle coat;0.00692558373670165!GO:0003702;RNA polymerase II transcription factor activity;0.00697989355788057!GO:0035258;steroid hormone receptor binding;0.00706764641941994!GO:0017166;vinculin binding;0.00751353760224937!GO:0046483;heterocycle metabolic process;0.00791416791037853!GO:0003711;transcription elongation regulator activity;0.00799436038957198!GO:0007040;lysosome organization and biogenesis;0.00800473083955556!GO:0005758;mitochondrial intermembrane space;0.00808499608640683!GO:0009308;amine metabolic process;0.00815827597091746!GO:0003924;GTPase activity;0.00846792654194792!GO:0009451;RNA modification;0.00848883576873337!GO:0016272;prefoldin complex;0.00856062489310702!GO:0005774;vacuolar membrane;0.00860444210032688!GO:0030132;clathrin coat of coated pit;0.00915217018273101!GO:0000725;recombinational repair;0.00958217563311759!GO:0000724;double-strand break repair via homologous recombination;0.00958217563311759!GO:0009081;branched chain family amino acid metabolic process;0.00961435164423647!GO:0030658;transport vesicle membrane;0.00964827283257848!GO:0043414;biopolymer methylation;0.00980722276307858!GO:0005832;chaperonin-containing T-complex;0.00995160974340888!GO:0000228;nuclear chromosome;0.0101757649286227!GO:0046982;protein heterodimerization activity;0.0106067629985382!GO:0007021;tubulin folding;0.0106149485044486!GO:0006376;mRNA splice site selection;0.0106149485044486!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0106149485044486!GO:0048487;beta-tubulin binding;0.0106149485044486!GO:0043433;negative regulation of transcription factor activity;0.0106636416586236!GO:0040029;regulation of gene expression, epigenetic;0.0109203861678434!GO:0006275;regulation of DNA replication;0.0109330065859857!GO:0031968;organelle outer membrane;0.0110508520351439!GO:0031124;mRNA 3'-end processing;0.0110797730673745!GO:0043022;ribosome binding;0.0114635163797974!GO:0030833;regulation of actin filament polymerization;0.011525344236205!GO:0006807;nitrogen compound metabolic process;0.011603283801764!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0117203306453907!GO:0000428;DNA-directed RNA polymerase complex;0.0117203306453907!GO:0051098;regulation of binding;0.0118527555590895!GO:0015631;tubulin binding;0.0119223023711884!GO:0004518;nuclease activity;0.012018192497332!GO:0006541;glutamine metabolic process;0.0123231644377212!GO:0031570;DNA integrity checkpoint;0.0124865441067946!GO:0005669;transcription factor TFIID complex;0.0126708058373655!GO:0008139;nuclear localization sequence binding;0.0126914547491886!GO:0001725;stress fiber;0.0128237582687128!GO:0032432;actin filament bundle;0.0128237582687128!GO:0008276;protein methyltransferase activity;0.012994789096104!GO:0030127;COPII vesicle coat;0.013070008003863!GO:0012507;ER to Golgi transport vesicle membrane;0.013070008003863!GO:0006518;peptide metabolic process;0.0131831462070916!GO:0046467;membrane lipid biosynthetic process;0.0133337398573985!GO:0007033;vacuole organization and biogenesis;0.0133970447348108!GO:0031902;late endosome membrane;0.0133970447348108!GO:0030137;COPI-coated vesicle;0.0133972761200305!GO:0005741;mitochondrial outer membrane;0.0134807467331847!GO:0006378;mRNA polyadenylation;0.0136816475857259!GO:0005876;spindle microtubule;0.0138118512096162!GO:0004527;exonuclease activity;0.0138278253504531!GO:0051540;metal cluster binding;0.0138278253504531!GO:0051536;iron-sulfur cluster binding;0.0138278253504531!GO:0051539;4 iron, 4 sulfur cluster binding;0.0142331217651818!GO:0030027;lamellipodium;0.0143515819512497!GO:0043596;nuclear replication fork;0.0143515819512497!GO:0019867;outer membrane;0.014414584518783!GO:0000792;heterochromatin;0.0145657010648893!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0147811654103449!GO:0030518;steroid hormone receptor signaling pathway;0.0149937499314642!GO:0006406;mRNA export from nucleus;0.0154195704027155!GO:0016481;negative regulation of transcription;0.0156587269805663!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0158961615542267!GO:0008180;signalosome;0.0164952451238024!GO:0006270;DNA replication initiation;0.0164983585635832!GO:0016126;sterol biosynthetic process;0.0166301243441814!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0178053856637757!GO:0005869;dynactin complex;0.0178337060672216!GO:0007017;microtubule-based process;0.0179262963990423!GO:0030660;Golgi-associated vesicle membrane;0.0187074100336908!GO:0004003;ATP-dependent DNA helicase activity;0.0191057500461488!GO:0008250;oligosaccharyl transferase complex;0.0191452504644491!GO:0051053;negative regulation of DNA metabolic process;0.0194792879643501!GO:0044437;vacuolar part;0.0194792879643501!GO:0032200;telomere organization and biogenesis;0.0197671129780626!GO:0000723;telomere maintenance;0.0197671129780626!GO:0044454;nuclear chromosome part;0.0198399134713972!GO:0000819;sister chromatid segregation;0.0199489794203174!GO:0008320;protein transmembrane transporter activity;0.020229480197788!GO:0031529;ruffle organization and biogenesis;0.020229480197788!GO:0008092;cytoskeletal protein binding;0.0202576500679087!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0207343373663312!GO:0022884;macromolecule transmembrane transporter activity;0.0208012723062589!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0208012723062589!GO:0031970;organelle envelope lumen;0.020981013291531!GO:0006892;post-Golgi vesicle-mediated transport;0.0212855428494997!GO:0043488;regulation of mRNA stability;0.0214277062464588!GO:0043487;regulation of RNA stability;0.0214277062464588!GO:0009889;regulation of biosynthetic process;0.0215213564339882!GO:0016860;intramolecular oxidoreductase activity;0.0215301488039853!GO:0003725;double-stranded RNA binding;0.0217302129397527!GO:0051656;establishment of organelle localization;0.0222907954174087!GO:0004576;oligosaccharyl transferase activity;0.0222907954174087!GO:0009070;serine family amino acid biosynthetic process;0.0224454403438567!GO:0006400;tRNA modification;0.022515383544224!GO:0000097;sulfur amino acid biosynthetic process;0.0226614466884146!GO:0006595;polyamine metabolic process;0.0226614466884146!GO:0008022;protein C-terminus binding;0.0226614466884146!GO:0000793;condensed chromosome;0.0226778189518594!GO:0016491;oxidoreductase activity;0.022739569475453!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0228894971031221!GO:0006144;purine base metabolic process;0.0228920051691182!GO:0000070;mitotic sister chromatid segregation;0.0236103866655994!GO:0042770;DNA damage response, signal transduction;0.0237619384896375!GO:0003923;GPI-anchor transamidase activity;0.023794901431266!GO:0016255;attachment of GPI anchor to protein;0.023794901431266!GO:0042765;GPI-anchor transamidase complex;0.023794901431266!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.023794901431266!GO:0019318;hexose metabolic process;0.0242428852567482!GO:0005996;monosaccharide metabolic process;0.0243491158706818!GO:0048523;negative regulation of cellular process;0.0247966711093767!GO:0006506;GPI anchor biosynthetic process;0.0258589120984879!GO:0000339;RNA cap binding;0.0260048650224072!GO:0006007;glucose catabolic process;0.0264331890254144!GO:0016407;acetyltransferase activity;0.0274361956462557!GO:0031123;RNA 3'-end processing;0.0278329914752609!GO:0006607;NLS-bearing substrate import into nucleus;0.0281383154102387!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0284806758219582!GO:0010257;NADH dehydrogenase complex assembly;0.0284806758219582!GO:0033108;mitochondrial respiratory chain complex assembly;0.0284806758219582!GO:0007050;cell cycle arrest;0.0288984143989873!GO:0000209;protein polyubiquitination;0.0291008088122244!GO:0000910;cytokinesis;0.0292932966882447!GO:0005663;DNA replication factor C complex;0.0294349492160457!GO:0032507;maintenance of cellular protein localization;0.0294349492160457!GO:0045767;regulation of anti-apoptosis;0.0296696769124861!GO:0005784;translocon complex;0.0298975142347012!GO:0005862;muscle thin filament tropomyosin;0.0302316433813019!GO:0043601;nuclear replisome;0.0309309836541877!GO:0030894;replisome;0.0309309836541877!GO:0009303;rRNA transcription;0.031379660244402!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0314510962005179!GO:0016408;C-acyltransferase activity;0.032351097631821!GO:0007569;cell aging;0.032620805676542!GO:0006505;GPI anchor metabolic process;0.0331404757664126!GO:0000152;nuclear ubiquitin ligase complex;0.0337130571306263!GO:0045893;positive regulation of transcription, DNA-dependent;0.0337130571306263!GO:0000118;histone deacetylase complex;0.034394654669754!GO:0031901;early endosome membrane;0.0344232031979303!GO:0065007;biological regulation;0.0352989815659924!GO:0030041;actin filament polymerization;0.0379782442322428!GO:0048037;cofactor binding;0.0381947043579565!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0382593234487442!GO:0008632;apoptotic program;0.0389120624813911!GO:0006497;protein amino acid lipidation;0.0396927369422562!GO:0006740;NADPH regeneration;0.0397522176578453!GO:0006098;pentose-phosphate shunt;0.0397522176578453!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0400312140221989!GO:0035267;NuA4 histone acetyltransferase complex;0.0411776086083647!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0413580817580752!GO:0000781;chromosome, telomeric region;0.0418568832284139!GO:0000790;nuclear chromatin;0.0422578232747391!GO:0047485;protein N-terminus binding;0.0425592799203619!GO:0004448;isocitrate dehydrogenase activity;0.042884554197032!GO:0031625;ubiquitin protein ligase binding;0.0431041258199592!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0434176774060089!GO:0000077;DNA damage checkpoint;0.0434300768905528!GO:0043624;cellular protein complex disassembly;0.043713610901339!GO:0045941;positive regulation of transcription;0.0444574723937404!GO:0042026;protein refolding;0.0446665726501533!GO:0046979;TAP2 binding;0.0455279292701834!GO:0046977;TAP binding;0.0455279292701834!GO:0046978;TAP1 binding;0.0455279292701834!GO:0008637;apoptotic mitochondrial changes;0.0455868439541521!GO:0009066;aspartate family amino acid metabolic process;0.0459039349125684!GO:0006610;ribosomal protein import into nucleus;0.046478297305962!GO:0004523;ribonuclease H activity;0.0467855734245387!GO:0019783;small conjugating protein-specific protease activity;0.0469188138533891!GO:0008538;proteasome activator activity;0.0483932795906754!GO:0005732;small nucleolar ribonucleoprotein complex;0.048551057688802!GO:0005083;small GTPase regulator activity;0.048551057688802!GO:0005652;nuclear lamina;0.0487509314580309!GO:0042158;lipoprotein biosynthetic process;0.0488104433730076!GO:0008287;protein serine/threonine phosphatase complex;0.0488741660820458!GO:0006643;membrane lipid metabolic process;0.0488825658751499!GO:0008286;insulin receptor signaling pathway;0.049113610774502
|sample_id=10423
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=placenta
|top_motifs=HOXA9_MEIS1:1.68362556267;VSX1,2:1.60712741817;SNAI1..3:1.55921967283;PITX1..3:1.55696760899;TOPORS:1.36140099143;ZEB1:1.29006208432;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.26623737981;TP53:1.21721558138;NFY{A,B,C}:1.2129282312;FOXQ1:1.2050007364;bHLH_family:1.17658487982;E2F1..5:1.10730114886;ZNF143:1.04013831792;MYOD1:0.918045048901;FOX{F1,F2,J1}:0.844151914402;SP1:0.737033318125;HIF1A:0.734001950361;TEAD1:0.69232354876;ELK1,4_GABP{A,B1}:0.630183736842;HOX{A5,B5}:0.597060863109;RORA:0.588518455426;FOXM1:0.584246155712;IKZF1:0.554805218641;MYB:0.535982941612;ZNF384:0.532794673986;RBPJ:0.53137907223;HOX{A6,A7,B6,B7}:0.502240105942;PAX1,9:0.452786876954;OCT4_SOX2{dimer}:0.445785226151;NKX3-2:0.436072430992;EVI1:0.431075143675;NRF1:0.427446724057;TEF:0.397233469884;XCPE1{core}:0.325417997195;TBX4,5:0.32215515693;GATA6:0.320917223418;AIRE:0.301166842568;GFI1:0.293437691377;CDC5L:0.275012874401;ESRRA:0.273023155096;HNF4A_NR2F1,2:0.226720749195;LMO2:0.217622360757;FOXP1:0.212678274341;NR1H4:0.191512646328;HLF:0.188516844759;CDX1,2,4:0.173642953314;FOXN1:0.155022210486;ONECUT1,2:0.154863572732;POU2F1..3:0.116723247352;FOXO1,3,4:0.110669390793;PRRX1,2:0.0495867869615;STAT5{A,B}:0.0216832953443;HNF1A:0.0147770401348;RFX2..5_RFXANK_RFXAP:0.0139517410675;LHX3,4:-0.0080492769383;UFEwm:-0.0160794966314;SOX{8,9,10}:-0.0216790221902;YY1:-0.0331356627527;NKX2-3_NKX2-5:-0.0417481611854;SPZ1:-0.0480986469491;ZFP161:-0.0500312632069;CEBPA,B_DDIT3:-0.0642037583202;CUX2:-0.0722076105087;SREBF1,2:-0.105882150655;ZNF148:-0.123165104632;KLF4:-0.133039248615;ATF4:-0.141521698573;FOXP3:-0.146604874995;STAT1,3:-0.147330414922;FOXA2:-0.155734842891;ARID5B:-0.157570447191;HOX{A4,D4}:-0.161795816948;BREu{core}:-0.167079058983;XBP1:-0.171713269978;TFAP2{A,C}:-0.182241859969;PBX1:-0.191692395277;CREB1:-0.2233177635;ZNF423:-0.232465138388;MED-1{core}:-0.242693197009;NKX2-1,4:-0.243499237465;TFAP4:-0.244015803159;ZNF238:-0.245506813825;MTF1:-0.252950544324;MYBL2:-0.257895618211;IKZF2:-0.284651866292;SOX17:-0.285243920001;LEF1_TCF7_TCF7L1,2:-0.305743758115;ADNP_IRX_SIX_ZHX:-0.306245465318;NFE2L2:-0.323043230888;ZBTB16:-0.327125575858;POU3F1..4:-0.341095171856;TFDP1:-0.344360623375;FOX{D1,D2}:-0.35248718648;ELF1,2,4:-0.3719566003;ZIC1..3:-0.374877420391;PDX1:-0.379926945347;SRF:-0.388497512846;ALX1:-0.39336629749;FOXD3:-0.42226652347;PAX4:-0.428211815733;NFKB1_REL_RELA:-0.428482970064;SOX2:-0.428836268372;NFE2:-0.434464653899;SPIB:-0.452963533876;POU1F1:-0.457044407579;FOS_FOS{B,L1}_JUN{B,D}:-0.458345410724;EBF1:-0.461693352072;GCM1,2:-0.461712342537;AHR_ARNT_ARNT2:-0.462508531312;PAX5:-0.476315319818;NR3C1:-0.478273719009;BACH2:-0.479739754705;NR5A1,2:-0.483055878977;MEF2{A,B,C,D}:-0.49113742011;NFIX:-0.492345803886;ALX4:-0.503370761839;MAFB:-0.50786598423;PAX8:-0.515530566499;POU6F1:-0.533731280674;STAT2,4,6:-0.538032175027;FOSL2:-0.551137455782;ETS1,2:-0.555673677533;CRX:-0.557247214957;FOXL1:-0.580004423981;ATF5_CREB3:-0.588304464126;TFAP2B:-0.592268950659;GTF2I:-0.597449507671;SPI1:-0.603938915327;POU5F1:-0.606633599509;ZBTB6:-0.61080898193;FOX{I1,J2}:-0.625970121397;RFX1:-0.629422571339;HAND1,2:-0.631044854164;ESR1:-0.631087312845;PAX2:-0.637349452146;RXRA_VDR{dimer}:-0.637587953092;TLX2:-0.641396589373;GFI1B:-0.653663251641;BPTF:-0.677587970544;ATF2:-0.687939520756;MAZ:-0.691787534797;EN1,2:-0.69481497747;PATZ1:-0.6965693226;MYFfamily:-0.69675900093;DMAP1_NCOR{1,2}_SMARC:-0.706136171556;GTF2A1,2:-0.708007456417;RREB1:-0.710821303064;RUNX1..3:-0.735271617069;TAL1_TCF{3,4,12}:-0.756995770086;PAX3,7:-0.76920425398;IRF7:-0.777966713144;TLX1..3_NFIC{dimer}:-0.789322392643;HMGA1,2:-0.790695603862;TGIF1:-0.818051233012;REST:-0.819035092791;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.859593794147;NKX6-1,2:-0.867190202252;NHLH1,2:-0.871050218388;TBP:-0.871144000409;IRF1,2:-0.881008544539;JUN:-0.88701455859;GATA4:-0.897956024734;NANOG:-0.901701832136;MTE{core}:-0.904939025367;SOX5:-0.922773793133;PRDM1:-0.939456694616;NFE2L1:-0.945116598586;DBP:-0.971010377637;HES1:-0.983276018297;HIC1:-0.989357710367;PPARG:-1.00213204405;NR6A1:-1.00971921961;RXR{A,B,G}:-1.01759461573;NKX2-2,8:-1.0379444569;HMX1:-1.10982907969;NKX3-1:-1.11334549924;MZF1:-1.12730994039;ATF6:-1.13701813276;AR:-1.15359443376;NANOG{mouse}:-1.2012584969;EGR1..3:-1.2599427833;NFIL3:-1.30608865077;HSF1,2:-1.30779393009;TFCP2:-1.37263267287;GZF1:-1.37821020722;T:-1.4162214088;NFATC1..3:-1.45798212779;HBP1_HMGB_SSRP1_UBTF:-1.48671351036;PAX6:-1.49782847076;SMAD1..7,9:-1.64777505448;EP300:-1.65103242227;GLI1..3:-1.73873122999
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10423-106C9;search_select_hide=table117:FF:10423-106C9
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:choriocarcinoma cell line:BeWo
Species:Human (Homo sapiens)
Library ID:CNhs10740
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueplacenta
dev stagefetus
sexmale
agefetal
cell typetrophoblast cell
cell lineBeWo
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005371
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10740 CAGE DRX007849 DRR008721
Accession ID Hg19

Library idBAMCTSS
CNhs10740 DRZ000146 DRZ001531
Accession ID Hg38

Library idBAMCTSS
CNhs10740 DRZ011496 DRZ012881
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005371
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10066 RNA-Seq DRX057123 DRR062882
Accession ID Hg19

Library idBAMCTSS
RDhi10066 DRZ007958


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0407
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.528
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0365
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0.278
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00361
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0398
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.165
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.11
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0704
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.161
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.567
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0233
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.273
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.662
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0373
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0373
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0717
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0109
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.449
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0074
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0182
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0.857
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0.133
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10740

Jaspar motifP-value
MA0002.20.0479
MA0003.10.117
MA0004.10.57
MA0006.10.34
MA0007.10.659
MA0009.10.603
MA0014.10.278
MA0017.10.513
MA0018.20.973
MA0019.10.0838
MA0024.12.83592e-6
MA0025.10.699
MA0027.10.569
MA0028.13.26181e-4
MA0029.10.209
MA0030.10.0405
MA0031.10.00753
MA0035.22.97629e-4
MA0038.10.00907
MA0039.23.86321e-4
MA0040.10.408
MA0041.10.0863
MA0042.10.328
MA0043.10.73
MA0046.10.676
MA0047.20.0967
MA0048.10.298
MA0050.15.26241e-5
MA0051.10.0249
MA0052.10.00253
MA0055.10.00258
MA0057.10.684
MA0058.10.422
MA0059.10.295
MA0060.12.49278e-12
MA0061.10.0104
MA0062.20.0714
MA0065.22.27867e-4
MA0066.10.628
MA0067.10.014
MA0068.10.197
MA0069.10.48
MA0070.10.659
MA0071.10.166
MA0072.10.204
MA0073.10.913
MA0074.10.824
MA0076.10.0164
MA0077.10.61
MA0078.10.287
MA0079.20.736
MA0080.24.73956e-7
MA0081.10.0366
MA0083.10.0703
MA0084.10.464
MA0087.10.288
MA0088.10.00504
MA0090.10.0176
MA0091.10.037
MA0092.10.24
MA0093.10.454
MA0099.21.34525e-8
MA0100.10.442
MA0101.10.00448
MA0102.20.626
MA0103.15.37856e-6
MA0104.20.195
MA0105.10.106
MA0106.11.01593e-4
MA0107.15.62042e-5
MA0108.20.00279
MA0111.10.837
MA0112.20.408
MA0113.10.6
MA0114.13.90049e-5
MA0115.10.155
MA0116.10.896
MA0117.10.923
MA0119.10.0611
MA0122.10.997
MA0124.10.412
MA0125.10.681
MA0131.10.95
MA0135.10.164
MA0136.12.45422e-4
MA0137.20.313
MA0138.20.0482
MA0139.10.0102
MA0140.10.00204
MA0141.10.963
MA0142.10.14
MA0143.10.442
MA0144.10.269
MA0145.10.239
MA0146.10.0137
MA0147.10.186
MA0148.10.48
MA0149.10.604
MA0150.10.0252
MA0152.10.303
MA0153.10.398
MA0154.10.448
MA0155.10.803
MA0156.10.0194
MA0157.10.129
MA0159.10.392
MA0160.10.476
MA0162.10.758
MA0163.10.631
MA0164.10.784
MA0258.10.425
MA0259.10.166



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10740

Novel motifP-value
10.458
100.661
1000.0392
1010.346
1020.0646
1030.103
1040.111
1050.741
1060.338
1070.685
1080.506
1090.0743
110.696
1100.335
1110.814
1120.381
1130.0144
1140.268
1150.816
1160.636
1170.0184
1180.23
1190.796
120.95
1200.689
1210.635
1220.886
1230.36
1240.978
1250.867
1260.718
1270.407
1280.512
1290.903
137.14923e-5
1300.343
1310.182
1320.952
1332.25913e-4
1340.931
1350.262
1360.00486
1370.11
1380.967
1390.373
140.912
1400.257
1410.171
1420.872
1430.0416
1440.0474
1450.389
1460.795
1470.212
1480.22
1490.782
150.715
1500.943
1510.536
1520.887
1530.5
1540.742
1550.103
1560.376
1570.814
1580.77
1590.786
160.489
1600.73
1610.283
1620.0618
1630.266
1640.645
1650.652
1660.0115
1670.86
1680.286
1690.196
170.596
180.749
190.428
20.871
200.748
210.524
220.573
230.439
240.292
250.483
260.415
270.932
280.661
290.298
30.563
300.948
310.92
320.17
330.342
340.524
350.663
360.313
370.488
380.756
390.264
40.624
400.0178
410.0707
420.443
430.816
440.298
450.439
460.954
470.0986
480.219
490.871
50.298
500.311
510.851
520.82
530.339
540.872
550.684
560.883
570.0857
580.466
590.79
60.622
600.748
610.385
620.513
630.801
640.774
650.802
660.00372
670.857
680.0293
690.479
70.138
700.211
710.442
720.893
730.912
740.41
750.0673
760.802
770.613
780.00171
790.247
80.766
800.021
810.967
820.824
830.785
840.675
850.423
860.533
870.024
880.73
890.0772
90.177
900.775
910.0614
920.776
930.644
940.364
950.0112
960.515
970.825
980.741
990.3



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10740


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)
0100798 (BeWo cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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