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{{f5samples
{{f5samples
|id=FF:13425-144D5
|DRA_sample_Accession=CAGE@SAMD00005689
|name=iPS differentiation to neuron, control donor C11-CRL2429, day00, rep2
|accession_numbers=CAGE;DRX008603;DRR009475;DRZ000900;DRZ002285;DRZ012250;DRZ013635
|sample_id=13425
|rna_tube_id=144D5
|rna_box=144
|rna_position=D5
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=C11-CRL2429
|sample_sex=male
|sample_age=newborn
|sample_ethnicity=
|rna_rin=10
|rna_od260/230=2.09
|rna_od260/280=1.93
|sample_cell_type=fibroblast-derived iPS
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=5.00
|rna_concentration=0.54
|sample_note=
|profile_hcage=CNhs13822,LSID1092,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000393,CL:0000211,CL:0000404,CL:0000255
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000210,FF:0000101,FF:0000001,FF:0200005,FF:0200003
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|donor= rep2
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.60!792.67!DNMT3B;;chr8:128428066..128428078,+!p1@POU5F1B!2.10!124.42!POU5F1B;;chr6:31138439..31138475,-!p1@POU5F1!2.09!123.14!POU5F1;;chr8:145701192..145701241,-!p1@FOXH1!2.08!118.64!FOXH1;;chr8:73921136..73921151,+!p2@TERF1!2.04!160.91!TERF1;;chr3:181429704..181429722,+!p1@SOX2!2.04!107.87!SOX2;;chr4:188916918..188916942,+!p1@ZFP42!2.02!103.69!ZFP42;;chr14:57272369..57272391,-!p2@OTX2!1.86!71.37!OTX2;;chr1:226411361..226411366,+!p1@MIXL1!1.85!70.09!MIXL1;;chr16:3149278..3149305,-!p1@ZSCAN10!1.84!68.96!ZSCAN10;;chr13:100623375..100623425,-!p1@ZIC5!1.75!55.30!ZIC5;;chr8:70983476..70983493,-!p1@PRDM14!1.66!44.69!PRDM14;;chr1:164528687..164528711,+!p6@PBX1!1.62!46.62!PBX1;;chr12:7941989..7942014,+!p1@NANOG!1.62!40.99!NANOG;;chr19:20188776..20188826,+!p1@ZNF90!1.61!104.17!ZNF90;;chrX:136648279..136648295,+!p1@ZIC3!1.58!36.81!ZIC3;;chr13:100634031..100634045,+!p1@ZIC2!1.53!33.12!ZIC2;;chr1:6304233..6304243,+!p1@HES3!1.53!32.95!HES3;;chr3:57234000..57234014,-!p1@HESX1!1.48!29.10!HESX1;;chr9:114287433..114287513,+!p1@ZNF483!1.46!70.41!ZNF483;;chr17:47892398..47892407,+!p2@KAT7!1.45!27.01!KAT7;;chr11:63684602..63684664,-!p1@RCOR2!1.43!50.64!RCOR2;;chr17:7493405..7493419,-!p1@SOX15!1.42!25.40!SOX15;;chr10:126138597..126138612,-!p1@NKX1-2!1.42!25.08!NKX1-2;;chr2:16080659..16080685,+!p1@MYCN!1.41!24.43!MYCN;;chr20:50418972..50419029,-!p1@SALL4!1.40!24.11!SALL4;;chr11:128457446..128457461,-!p4@ETS1!1.39!23.31!ETS1;;chr2:16081912..16081931,+!p2@MYCN!1.36!21.86!MYCN;;chr10:70320074..70320106,+!p1@TET1!1.33!40.51!TET1;;chr14:22005197..22005261,-!p3@SALL2!1.33!20.25!SALL2;;chr20:50419055..50419066,-!p3@SALL4!1.33!20.25!SALL4;;chr2:5832508..5832524,+!p1@SOX11!1.33!20.25!SOX11;;chr2:25475094..25475112,-!p3@DNMT3A!1.30!18.81!DNMT3A;;chr2:25475120..25475176,-!p2@DNMT3A!1.29!25.08!DNMT3A;;chr8:102504651..102504683,+!p1@GRHL2!1.29!18.49!GRHL2;;chr3:27764190..27764208,-!p2@EOMES!1.27!17.52!EOMES;;chr5:153857778..153857794,-!p1@HAND1!1.26!17.04!HAND1;;chr4:299227..299272,-!p1@ZNF732!1.24!16.40!ZNF732;;chr3:181429741..181429767,+!p2@SOX2!1.23!15.91!SOX2;;chr12:7942020..7942031,+!p2@NANOG!1.23!15.91!NANOG;;chr7:26191809..26191890,+!p1@NFE2L3!1.22!76.52!NFE2L3;;chrX:139587228..139587234,-!p1@SOX3!1.22!15.75!SOX3;;chr13:100634004..100634025,+!p2@ZIC2!1.22!15.75!ZIC2;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.59!ZIC2;;chr2:171571827..171571853,+!p1@SP5!1.22!15.43!SP5;;chr9:127533519..127533573,-!p2@NR6A1!1.21!18.33!NR6A1;;chr10:135043702..135043729,+!p1@UTF1!1.21!15.27!UTF1;;chr17:41622765..41622821,-!p2@ETV4!1.20!22.34!ETV4;;chr3:48282587..48282603,+!p1@ZNF589!1.19!64.14!ZNF589;;chr19:46800289..46800327,+!p2@HIF3A!1.19!14.63!HIF3A;;chr2:60780753..60780800,-!p1@BCL11A!1.18!69.77!BCL11A;;chr8:145701166..145701187,-!p2@FOXH1!1.18!14.15!FOXH1;;chr18:56530136..56530199,+!p3@ZNF532!1.17!20.90!ZNF532;;chr19:23299814..23299844,+!p1@ZNF730!1.17!17.04!ZNF730;;chr6:166581333..166581349,-!p2@T!1.16!13.34!T;;chr17:41623692..41623715,-!p1@ETV4!1.15!55.78!ETV4;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.15!28.29!SOHLH2;;chr1:63788229..63788250,+!p1@FOXD3!1.15!13.02!FOXD3;;chr19:20011775..20011800,+!p2@ZNF93!1.14!22.99!ZNF93;;chr3:71355163..71355209,-!p5@FOXP1!1.11!16.72!FOXP1;;chr1:201979703..201979721,+!p2@ELF3!1.11!11.90!ELF3;;chr8:40755333..40755352,-!p1@ZMAT4!1.11!11.90!ZMAT4;;chr6:21597765..21597779,+!p2@SOX4!1.10!94.36!SOX4;;chr3:170076314..170076334,+!p2@SKIL!1.10!15.11!SKIL;;chr8:55370487..55370503,+!p1@SOX17!1.10!11.73!SOX17;;chrY:21906594..21906622,-!p1@KDM5D!1.10!11.57!KDM5D;;chr12:3068544..3068597,+!p1@TEAD4!1.09!68.16!TEAD4;;chr5:124084493..124084524,-!p2@ZNF608!1.09!25.56!ZNF608;;chr20:50418128..50418147,-!p2@SALL4!1.09!11.25!SALL4;;chr12:66218836..66218888,+!p1@HMGA2!1.08!102.88!HMGA2;;chr2:60780607..60780624,-!p2@BCL11A!1.08!34.24!BCL11A;;chr18:56531584..56531646,+!p4@ZNF532!1.08!14.47!ZNF532;;chr19:12163769..12163798,-!p1@ZNF878!1.08!14.31!ZNF878;;chr3:27763807..27763822,-!p1@EOMES!1.08!10.93!EOMES;;chr19:23433144..23433204,-!p1@ZNF724P!1.07!48.23!ZNF724P;;chr14:95236551..95236576,-!p2@GSC!1.07!10.77!GSC;;chr16:30406423..30406447,+!p4@ZNF48!1.07!10.77!ZNF48;;chr6:15246200..15246214,+!p2@JARID2!1.06!29.58!JARID2;;chr12:66218183..66218209,+!p4@HMGA2!1.06!20.25!HMGA2;;chr8:73921067..73921078,+!p3@TERF1!1.04!15.91!TERF1;;chr14:21994337..21994442,-!p1@SALL2!1.03!27.33!SALL2;;chr16:29818199..29818216,+!p11@MAZ!1.03!16.08!MAZ;;chr8:70983506..70983522,-!p3@PRDM14!1.03!9.81!PRDM14;;chr15:90294478..90294480,-!p6@MESP1!1.03!9.65!MESP1;;chr2:16082155..16082169,+!p3@MYCN!1.03!9.65!MYCN;;chr6:20402102..20402152,+!p1@E2F3!1.02!39.71!E2F3;;chr19:58400344..58400364,-!p2@ZNF814!1.02!13.82!ZNF814;;chr19:58341656..58341694,+!p5@ZNF587!1.02!11.57!ZNF587;;chr1:201979743..201979762,+!p1@ELF3!1.01!9.16!ELF3;;chr11:120107344..120107351,+!p1@POU2F3!1.00!11.09!POU2F3;;chr15:74833584..74833626,+!p1@ARID3B!0.99!20.74!ARID3B;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.99!12.86!TGIF2;;chr19:58400372..58400411,-!p1@ZNF814!0.98!45.49!ZNF814;;chr14:69263043..69263069,-!p8@ZFP36L1!0.98!8.52!ZFP36L1;;chr6:34204672..34204692,+!p1@HMGA1!0.97!960.34!HMGA1;;chr6:21593973..21593988,+!p1@SOX4!0.96!302.22!SOX4;;chr14:90085820..90085840,-!p6@FOXN3!0.96!8.20!FOXN3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.96!8.04!LHX1;;chr19:50922187..50922204,+!p1@SPIB!0.96!8.04!SPIB;;chrX:136648297..136648319,+!p3@ZIC3!0.96!8.04!ZIC3;;chr2:85360499..85360598,+!p1@TCF7L1!0.94!44.37!TCF7L1;;chr12:66218378..66218401,+!p6@HMGA2!0.94!12.22!HMGA2;;chr6:126070769..126070801,+!p1@HEY2!0.94!9.00!HEY2;;chr20:42295713..42295738,+!p2@MYBL2!0.93!45.65!MYBL2;;chrX:136648643..136648711,+!p2@ZIC3!0.93!7.56!ZIC3;;chr8:70983443..70983460,-!p2@PRDM14!0.93!7.56!PRDM14;;chr19:20959098..20959117,+!p1@ZNF66P!0.92!31.83!ZNF66P;;chr8:86089627..86089653,+!p3@E2F5!0.92!8.36!E2F5;;chr19:23299851..23299880,+!p2@ZNF730!0.92!7.23!ZNF730;;chr14:22005343..22005364,-!p5@SALL2!0.92!7.23!SALL2;;chr16:29818160..29818188,+!p6@MAZ!0.91!34.40!MAZ;;chr19:20011744..20011770,+!p1@ZNF93!0.91!29.10!ZNF93;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.95!ZNF788;;chr6:21597600..21597664,+!p3@SOX4!0.91!12.06!SOX4;;chr11:6947720..6947812,+!p1@ZNF215!0.91!9.32!ZNF215;;chr10:48355030..48355090,+!p1@ZNF488!0.90!9.16!ZNF488;;chr7:14028743..14028799,-!p3@ETV1!0.90!8.84!ETV1;;chr14:21994449..21994524,-!p2@SALL2!0.89!20.90!SALL2;;chr10:70320041..70320065,+!p2@TET1!0.89!6.75!TET1;;chr3:185797712..185797746,-!p6@ETV5!0.88!6.59!ETV5;;chr5:138609782..138609826,+!p5@MATR3!0.87!43.72!MATR3;;chr19:20150268..20150298,-!p2@ZNF682!0.87!12.38!ZNF682;;chr1:247171347..247171366,-!p2@ZNF695!0.87!12.06!ZNF695;;chr17:46132044..46132080,+!p4@NFE2L1!0.87!6.43!NFE2L1;;chr18:76740152..76740186,+!p2@SALL3!0.87!6.43!SALL3;;chr2:42795745..42795824,+!p1@MTA3!0.86!61.41!MTA3;;chr18:53254566..53254567,-!p8@TCF4!0.86!10.45!TCF4;;chr3:33482052..33482116,-!p2@UBP1!0.86!9.81!UBP1;;chr2:60778035..60778060,-!p4@BCL11A!0.86!7.56!BCL11A;;chr9:77112244..77112262,+!p1@RORB!0.86!7.07!RORB;;chr10:126138622..126138638,-!p2@NKX1-2!0.86!6.27!NKX1-2;;chr15:85144307..85144329,+!p2@ZSCAN2!0.85!7.07!ZSCAN2;;chr20:31368212..31368235,+!p2@DNMT3B!0.85!6.11!DNMT3B;;chr19:19976683..19976709,+!p1@ZNF253!0.84!27.65!ZNF253;;chr1:40367530..40367597,-!p1@MYCL1!0.84!11.25!MYCL1;;chr15:57511609..57511651,+!p2@TCF12!0.84!10.29!TCF12;;chr17:41623009..41623053,-!p4@ETV4!0.84!9.81!ETV4;;chrX:84499081..84499115,+!p2@ZNF711!0.84!8.84!ZNF711;;chr19:20188831..20188844,+!p2@ZNF90!0.84!5.95!ZNF90;;chr2:5832493..5832507,+!p2@SOX11!0.84!5.95!SOX11;;chr2:239148671..239148686,-!p1@HES6!0.83!22.51!HES6;;chr14:22005018..22005040,-!p6@SALL2!0.83!5.79!SALL2;;chr19:22034809..22034878,-!p2@ZNF43!0.82!21.22!ZNF43;;chr19:925727..925784,+!p3@ARID3A!0.82!12.70!ARID3A;;chr17:41622925..41622976,-!p3@ETV4!0.82!8.68!ETV4;;chr19:46367576..46367592,+!p1@FOXA3!0.82!5.63!FOXA3;;chr13:41240737..41240787,-!p1@FOXO1!0.81!70.89!FOXO1;;chr10:114710098..114710130,+!p2@TCF7L2!0.81!44.21!TCF7L2;;chr19:23941680..23941704,-!p1@ZNF681!0.81!16.88!ZNF681;;chr6:21597514..21597578,+!p4@SOX4!0.81!9.65!SOX4;;chr14:21566540..21566580,-!p2@ZNF219!0.81!7.56!ZNF219;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.95!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.81!5.47!HMGA2;;chr6:28048343..28048354,+!p1@ZNF165!0.81!5.47!ZNF165;;chr1:204042233..204042249,+!p1@SOX13!0.80!36.17!SOX13;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.36!HMGA2;;chr3:141747441..141747452,-!p4@TFDP2!0.80!7.72!TFDP2;;chrX:84498989..84499003,+!p1@ZNF711!0.80!7.39!ZNF711;;chr13:100623360..100623373,-!p2@ZIC5!0.80!5.30!ZIC5;;chr6:15246261..15246312,+!p1@JARID2!0.79!136.48!JARID2;;chr9:127533582..127533615,-!p1@NR6A1!0.79!8.04!NR6A1;;chr2:171572786..171572840,+!p2@SP5!0.79!5.14!SP5;;chr14:75745523..75745537,+!p1@FOS!0.78!666.80!FOS;;chr19:20278012..20278034,+!p1@ZNF486!0.78!46.30!ZNF486;;chr6:21597370..21597408,+!p5@SOX4!0.78!8.36!SOX4;;chr5:124082580..124082603,-!p4@ZNF608!0.78!5.79!ZNF608;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.70!RBPJ;;chr1:209979467..209979494,-!p1@IRF6!0.77!5.63!IRF6;;chr19:23941647..23941672,-!p2@ZNF681!0.76!8.36!ZNF681;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.75!19.13!HNRPK;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.91!HMGA2;;chr6:21597283..21597312,+!p7@SOX4!0.75!6.43!SOX4;;chr17:7197911..7197964,-!p1@YBX2!0.75!4.66!YBX2;;chr12:50479109..50479146,+!p2@SMARCD1!0.74!84.23!SMARCD1;;chr12:7079780..7079791,-!p2@PHB2!0.74!26.04!PHB2;;chr1:164528616..164528660,+!p5@PBX1!0.74!9.81!PBX1;;chr10:114710218..114710229,+!p4@TCF7L2!0.74!9.48!TCF7L2;;chr16:51185363..51185381,-!p4@SALL1!0.74!4.50!SALL1;;chr22:21771656..21771662,+!p1@HIC2!0.74!4.50!HIC2;;chr2:16080635..16080650,+!p4@MYCN!0.74!4.50!MYCN;;chr2:88752207..88752218,-!p1@FOXI3!0.74!4.50!FOXI3;;chr19:47523058..47523114,+!p1@NPAS1!0.74!4.50!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.73!80.22!MYBL2;;chr7:64838786..64838809,+!p2@ZNF92!0.73!27.81!ZNF92;;chr19:23869970..23869991,-!p1@ZNF675!0.73!18.49!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I2!0.26!0.96!GLI2;;chr21:47063590..47063597,+!p2@PCBP3!0.26!0.80!PCBP3;;chr2:10091783..10091811,+!p2@GRHL1!0.26!0.80!GRHL1;;chr2:214014959..214015006,-!p4@IKZF2!0.26!0.80!IKZF2;;chr2:25474941..25474953,-!p16@DNMT3A!0.26!0.80!DNMT3A;;chr2:42795483..42795497,+!p16@MTA3!0.26!0.80!MTA3;;chr2:95963052..95963106,+!p1@KCNIP3!0.26!0.80!KCNIP3;;chr2:97203110..97203159,+!p4@ARID5A!0.26!0.80!ARID5A;;chr4:111544254..111544270,-!p3@PITX2!0.26!0.80!PITX2;;chr4:121843402..121843416,+!p4@PRDM5!0.26!0.80!PRDM5;;chr4:47916225..47916234,-!p5@NFXL1!0.26!0.80!NFXL1;;chr4:87927888..87927912,+!p18@AFF1!0.26!0.80!AFF1;;chr5:124081979..124082021,-!p7@ZNF608!0.26!0.80!ZNF608;;chr5:1882170..1882182,-!p3@IRX4!0.26!0.80!IRX4;;chr5:50679228..50679288,+!p1@ISL1!0.26!0.80!ISL1;;chr6:152128810..152128827,+!p2@ESR1!0.26!0.80!ESR1;;chr6:15245752..15245767,+!p14@JARID2!0.26!0.80!JARID2;;chr6:32158046..32158055,-!p4@PBX2!0.26!0.80!PBX2;;chr7:27282416..27282426,+!p1@EVX1!0.26!0.80!EVX1;;chr8:93107696..93107716,-!p8@RUNX1T1!0.26!0.80!RUNX1T1;;chr14:75746340..75746368,+!p3@FOS!0.26!0.80!FOS;;chr14:75747250..75747267,+!p5@FOS!0.26!0.80!FOS;;chr14:89029904..89029917,+!p5@ZC3H14!0.26!0.80!ZC3H14;;chr15:57212066..57212091,+!p13@TCF12!0.26!0.80!TCF12;;chr15:90294523..90294532,-!p9@MESP1!0.26!0.80!MESP1;;chr16:51185172..51185197,-!p1@SALL1!0.26!0.80!SALL1;;chr16:51185573..51185593,-!p3@SALL1!0.26!0.80!SALL1;;chr16:8963020..8963054,-!p6@CARHSP1!0.26!0.80!CARHSP1;;chr17:6926381..6926392,+!p2@BCL6B!0.26!0.80!BCL6B;;chr19:11750543..11750565,+!p2@ZNF833P!0.26!0.80!ZNF833P;;chr19:37808831..37808843,+!p6@HKR1!0.26!0.80!HKR1;;chr19:58545454..58545498,+!p1@ZSCAN1!0.26!0.80!ZSCAN1;;chr1:10856694..10856715,-!p3@CASZ1!0.26!0.80!CASZ1;;chr1:164528276..164528286,+!p14@PBX1!0.26!0.80!PBX1;;chr1:200008407..200008418,+!p7@NR5A2!0.26!0.80!NR5A2;;chr1:40367497..40367506,-!p6@MYCL1!0.26!0.80!MYCL1;;chr20:50419112..50419117,-!p10@SALL4!0.26!0.80!SALL4;;chr20:56100179..56100208,-!p1@CTCFL!0.26!0.80!CTCFL;;chr21:34144332..34144368,-!p9@GCFC1!0.26!0.80!GCFC1;;chr10:135044123..135044144,+!p5@UTF1!0.26!0.80!UTF1;;chr10:135051422..135051430,+!p2@VENTX!0.26!0.80!VENTX;;chr11:125034640..125034655,+!p1@PKNOX2!0.26!0.80!PKNOX2;;chr11:12696579..12696611,+!p4@TEAD1!0.26!0.80!TEAD1;;chr11:65554528..65554546,+!p1@OVOL1!0.26!0.80!OVOL1;;chr12:111471526..111471541,+!p1@CUX2!0.26!0.80!CUX2;;chr12:52430835..52430843,+!p17@NR4A1!0.26!0.80!NR4A1;;chr12:54694807..54694832,-!p3@NFE2!0.26!0.80!NFE2;;chr12:57504069..57504090,-!p7@STAT6!0.26!0.80!STAT6;;chr12:85673977..85674015,+!p1@ALX1!0.26!0.80!ALX1;;chr13:46543936..46543949,-!p19@ZC3H13!0.26!0.80!ZC3H13;;chr14:24020596..24020624,-!p3@ZFHX2!0.26!0.80!ZFHX2;;chr14:57277178..57277203,-!p1@OTX2!0.26!0.80!OTX2;;chr14:68283125..68283137,-!p5@ZFYVE26!0.26!0.80!ZFYVE26;;chr9:79633621..79633632,+!p@chr9:79633621..79633632,+!0.26!0.80!FOXB2;;chrX:66763914..66763933,+!p3@AR!0.26!0.80!AR;;chr22:24129138..24129201,+!p1@SMARCB1!0.25!80.38!SMARCB1;;chr19:24216213..24216314,+!p1@ZNF254!0.25!27.33!ZNF254;;chr12:51477368..51477386,-!p1@CSRNP2!0.25!17.36!CSRNP2;;chr6:43139153..43139232,+!p1@SRF!0.25!14.95!SRF;;chr19:1863591..1863611,-!p2@KLF16!0.25!14.95!KLF16;;chr19:58459047..58459083,-!p1@ZNF256!0.25!7.07!ZNF256;;chr1:45805813..45805859,+!p1@TOE1!0.25!6.59!TOE1;;chr15:77713025..77713081,+!p2@HMG20A!0.25!6.27!HMG20A;;chr4:41992565..41992580,+!p2@SLC30A9!0.25!5.14!SLC30A9;;chr16:30569678..30569720,-!p1@ZNF764!0.25!4.98!ZNF764;;chr18:77155922..77155939,+!p1@NFATC1!0.25!3.70!NFATC1;;chr6:20403727..20403769,+!p4@E2F3!0.25!3.05!E2F3;;chr11:47270436..47270464,+!p2@NR1H3!0.25!2.57!NR1H3;;chr15:90544532..90544563,+!p1@ZNF710!0.25!2.41!ZNF710;;chr9:128509635..128509658,+!p2@PBX3!0.25!2.25!PBX3;;
|ffid_belonging_in_development=CL:0000133,CL:0000031,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
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|name=iPS differentiation to neuron, control donor C11-CRL2429
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|rna_box=144
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|rna_concentration=0.54
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.09
|rna_od260/280=1.93
|rna_position=D5
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=144D5
|rna_weight_ug=5
|sample_age=newborn
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=fibroblast-derived iPS
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=C11-CRL2429
|sample_ethnicity=
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.29637760785045e-264!GO:0043226;organelle;3.10306347493447e-219!GO:0043229;intracellular organelle;1.92426879258574e-218!GO:0043227;membrane-bound organelle;5.1342650539603e-214!GO:0043231;intracellular membrane-bound organelle;5.44448914901661e-214!GO:0005737;cytoplasm;2.03634367633664e-180!GO:0044422;organelle part;7.55935661748243e-158!GO:0044446;intracellular organelle part;3.25309703281281e-156!GO:0044444;cytoplasmic part;1.06099646274846e-125!GO:0032991;macromolecular complex;2.63160563023213e-117!GO:0030529;ribonucleoprotein complex;8.94270915608602e-103!GO:0044237;cellular metabolic process;8.91712672604024e-101!GO:0044238;primary metabolic process;3.8591607069299e-100!GO:0005634;nucleus;2.05369876206088e-97!GO:0043170;macromolecule metabolic process;2.90328289217528e-94!GO:0003723;RNA binding;2.73933172579601e-88!GO:0043233;organelle lumen;1.24107181546234e-82!GO:0031974;membrane-enclosed lumen;1.24107181546234e-82!GO:0044428;nuclear part;8.14236838140266e-82!GO:0005739;mitochondrion;2.53671023953049e-79!GO:0005515;protein binding;3.24918586227774e-64!GO:0005840;ribosome;1.35442448663146e-63!GO:0006396;RNA processing;1.61656752020688e-59!GO:0043234;protein complex;9.73379216562229e-59!GO:0043283;biopolymer metabolic process;5.9533573425471e-58!GO:0006412;translation;3.07967531455953e-56!GO:0003735;structural constituent of ribosome;8.24972280562903e-55!GO:0016043;cellular component organization and biogenesis;3.56709654706248e-53!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.76902602187807e-52!GO:0044429;mitochondrial part;2.85565346014886e-51!GO:0031981;nuclear lumen;6.11489902015907e-50!GO:0010467;gene expression;6.46948004171443e-50!GO:0033279;ribosomal subunit;1.1475224168723e-48!GO:0009058;biosynthetic process;1.9914837952883e-47!GO:0019538;protein metabolic process;3.26350052551664e-47!GO:0043228;non-membrane-bound organelle;1.88307066578388e-46!GO:0043232;intracellular non-membrane-bound organelle;1.88307066578388e-46!GO:0044249;cellular biosynthetic process;3.68371682352328e-46!GO:0006996;organelle organization and biogenesis;8.9600634513692e-46!GO:0016071;mRNA metabolic process;1.25103162677645e-43!GO:0031090;organelle membrane;1.37994662137609e-43!GO:0009059;macromolecule biosynthetic process;1.57608882585098e-43!GO:0031967;organelle envelope;5.8441823592938e-43!GO:0065003;macromolecular complex assembly;1.17171598859506e-42!GO:0031975;envelope;1.65827672702078e-42!GO:0044267;cellular protein metabolic process;2.29735441106534e-41!GO:0044260;cellular macromolecule metabolic process;3.34632933412952e-41!GO:0006259;DNA metabolic process;5.91261432540096e-41!GO:0008380;RNA splicing;1.29019324675576e-40!GO:0022607;cellular component assembly;1.97898116902344e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.24882256668263e-39!GO:0033036;macromolecule localization;2.77146118920648e-38!GO:0015031;protein transport;3.15493699159874e-38!GO:0006397;mRNA processing;4.90045746862587e-37!GO:0005829;cytosol;1.61567164909724e-35!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.69357566512039e-35!GO:0008104;protein localization;2.73714379676086e-34!GO:0003676;nucleic acid binding;1.51097247543262e-33!GO:0045184;establishment of protein localization;1.8407219950754e-33!GO:0046907;intracellular transport;5.026158071277e-33!GO:0000166;nucleotide binding;3.79629647099176e-31!GO:0019866;organelle inner membrane;7.83905476742244e-31!GO:0005740;mitochondrial envelope;1.61512950084682e-30!GO:0005681;spliceosome;1.20940570686433e-29!GO:0005743;mitochondrial inner membrane;1.15915993900548e-28!GO:0031966;mitochondrial membrane;1.89764394335099e-28!GO:0007049;cell cycle;2.16723999644875e-28!GO:0005654;nucleoplasm;2.25857805364833e-28!GO:0044445;cytosolic part;3.85145926152991e-27!GO:0005694;chromosome;3.69262599035288e-26!GO:0006886;intracellular protein transport;8.02464615087473e-26!GO:0015935;small ribosomal subunit;1.09872521237106e-25!GO:0031980;mitochondrial lumen;1.91555722327653e-25!GO:0005759;mitochondrial matrix;1.91555722327653e-25!GO:0044427;chromosomal part;2.08541564931173e-24!GO:0015934;large ribosomal subunit;3.61677705452502e-24!GO:0005730;nucleolus;1.3692268920283e-23!GO:0006974;response to DNA damage stimulus;2.53304119314598e-23!GO:0016070;RNA metabolic process;5.86655835498797e-23!GO:0044455;mitochondrial membrane part;6.28738375087921e-23!GO:0006119;oxidative phosphorylation;1.05785288594568e-22!GO:0044451;nucleoplasm part;1.53808278491509e-22!GO:0051649;establishment of cellular localization;1.66999502688721e-22!GO:0022618;protein-RNA complex assembly;2.09965212875883e-22!GO:0016462;pyrophosphatase activity;6.31946784587357e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.49762807701294e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.11817209201983e-21!GO:0032553;ribonucleotide binding;1.22052693944376e-21!GO:0032555;purine ribonucleotide binding;1.22052693944376e-21!GO:0000278;mitotic cell cycle;1.42965975078837e-21!GO:0051276;chromosome organization and biogenesis;1.63106013758245e-21!GO:0051641;cellular localization;1.72841612927699e-21!GO:0022402;cell cycle process;3.58531975161134e-21!GO:0017076;purine nucleotide binding;6.80203579994401e-21!GO:0017111;nucleoside-triphosphatase activity;1.26893284841337e-20!GO:0016874;ligase activity;1.23156975904243e-19!GO:0006281;DNA repair;2.09862611792752e-19!GO:0000087;M phase of mitotic cell cycle;1.94757124195559e-18!GO:0005761;mitochondrial ribosome;2.95564183793523e-18!GO:0000313;organellar ribosome;2.95564183793523e-18!GO:0007067;mitosis;3.33025085180415e-18!GO:0005524;ATP binding;3.45958452751196e-18!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.7905904940353e-18!GO:0044265;cellular macromolecule catabolic process;5.42700230513351e-18!GO:0022403;cell cycle phase;7.58159884604704e-18!GO:0032559;adenyl ribonucleotide binding;8.91398999134527e-18!GO:0008135;translation factor activity, nucleic acid binding;9.81526657364075e-18!GO:0051301;cell division;1.29509758662145e-17!GO:0006457;protein folding;2.56951053469926e-17!GO:0042254;ribosome biogenesis and assembly;2.63298263489435e-17!GO:0005746;mitochondrial respiratory chain;3.66068004981402e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.73616219411354e-17!GO:0012505;endomembrane system;4.81647939240419e-17!GO:0030554;adenyl nucleotide binding;6.39846577988754e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.23305962965449e-17!GO:0006260;DNA replication;9.16763769883522e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;9.38127401093797e-17!GO:0050136;NADH dehydrogenase (quinone) activity;9.45001521704964e-17!GO:0003954;NADH dehydrogenase activity;9.45001521704964e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.45001521704964e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12976281759226e-16!GO:0019941;modification-dependent protein catabolic process;1.29282327566088e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.29282327566088e-16!GO:0044257;cellular protein catabolic process;1.92103096991665e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.9431778753358e-16!GO:0006512;ubiquitin cycle;2.99355611754759e-16!GO:0006323;DNA packaging;3.09603177800117e-16!GO:0043285;biopolymer catabolic process;3.29775718140135e-16!GO:0000279;M phase;9.06307294272104e-16!GO:0009057;macromolecule catabolic process;1.23469775885994e-15!GO:0051186;cofactor metabolic process;1.36182626792366e-15!GO:0009719;response to endogenous stimulus;1.608289365299e-15!GO:0044248;cellular catabolic process;1.69169730152547e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.88739856357265e-15!GO:0000375;RNA splicing, via transesterification reactions;1.88739856357265e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.88739856357265e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.16345540650661e-15!GO:0006413;translational initiation;5.84580574850226e-15!GO:0030163;protein catabolic process;1.65023617491682e-14!GO:0048770;pigment granule;1.6796854113356e-14!GO:0042470;melanosome;1.6796854113356e-14!GO:0065004;protein-DNA complex assembly;1.71768993370839e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.83555297715852e-14!GO:0045271;respiratory chain complex I;1.83555297715852e-14!GO:0005747;mitochondrial respiratory chain complex I;1.83555297715852e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.90566369339138e-14!GO:0042773;ATP synthesis coupled electron transport;1.90566369339138e-14!GO:0043412;biopolymer modification;1.98104678257412e-14!GO:0031965;nuclear membrane;2.36549384656719e-14!GO:0003743;translation initiation factor activity;2.47388174401898e-14!GO:0000785;chromatin;4.04118554272338e-14!GO:0006399;tRNA metabolic process;5.73824567004026e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.63313974312248e-14!GO:0006605;protein targeting;1.48376283407803e-13!GO:0044453;nuclear membrane part;1.48828610299123e-13!GO:0005635;nuclear envelope;3.73497884905938e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.88862236476846e-13!GO:0006732;coenzyme metabolic process;4.6919361533158e-13!GO:0005643;nuclear pore;8.62955587017e-13!GO:0006333;chromatin assembly or disassembly;1.16274225273259e-12!GO:0005794;Golgi apparatus;1.23859330779446e-12!GO:0004386;helicase activity;1.40856057212047e-12!GO:0006364;rRNA processing;2.04661097084511e-12!GO:0006446;regulation of translational initiation;2.27992971902868e-12!GO:0016072;rRNA metabolic process;3.01104491098974e-12!GO:0006464;protein modification process;3.34839979018403e-12!GO:0042623;ATPase activity, coupled;3.76150605511155e-12!GO:0016887;ATPase activity;5.7886913306822e-12!GO:0006334;nucleosome assembly;6.10921988378553e-12!GO:0051082;unfolded protein binding;6.48078673033152e-12!GO:0016740;transferase activity;1.63480190630071e-11!GO:0008134;transcription factor binding;1.87647520379804e-11!GO:0031497;chromatin assembly;1.95859848552413e-11!GO:0016604;nuclear body;3.77128163418336e-11!GO:0006403;RNA localization;4.1170172623954e-11!GO:0006461;protein complex assembly;4.28588495969112e-11!GO:0005783;endoplasmic reticulum;5.05680838659782e-11!GO:0008565;protein transporter activity;5.47241079129838e-11!GO:0050657;nucleic acid transport;6.46866140055564e-11!GO:0051236;establishment of RNA localization;6.46866140055564e-11!GO:0050658;RNA transport;6.46866140055564e-11!GO:0043687;post-translational protein modification;8.8409567366554e-11!GO:0008026;ATP-dependent helicase activity;9.67539975745751e-11!GO:0065002;intracellular protein transport across a membrane;1.21746378821867e-10!GO:0006913;nucleocytoplasmic transport;1.54157786008125e-10!GO:0015630;microtubule cytoskeleton;1.90613684984028e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.9246072782486e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.9246072782486e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.9246072782486e-10!GO:0051169;nuclear transport;4.00327472762579e-10!GO:0030532;small nuclear ribonucleoprotein complex;6.17544357910545e-10!GO:0048193;Golgi vesicle transport;6.76675220881577e-10!GO:0043038;amino acid activation;7.24187820199507e-10!GO:0006418;tRNA aminoacylation for protein translation;7.24187820199507e-10!GO:0043039;tRNA aminoacylation;7.24187820199507e-10!GO:0046930;pore complex;7.39108726050891e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.9623390463248e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.16723458729892e-09!GO:0009055;electron carrier activity;1.16723458729892e-09!GO:0009259;ribonucleotide metabolic process;1.3169843106508e-09!GO:0016607;nuclear speck;1.31800592638316e-09!GO:0006163;purine nucleotide metabolic process;1.60265681239601e-09!GO:0051726;regulation of cell cycle;2.22958288450275e-09!GO:0006164;purine nucleotide biosynthetic process;2.33973863849316e-09!GO:0051028;mRNA transport;3.0957670476152e-09!GO:0006261;DNA-dependent DNA replication;3.15080491847825e-09!GO:0000074;regulation of progression through cell cycle;3.44715239077194e-09!GO:0009260;ribonucleotide biosynthetic process;5.01556022416848e-09!GO:0044432;endoplasmic reticulum part;5.14962716051695e-09!GO:0051188;cofactor biosynthetic process;5.33029138337339e-09!GO:0016779;nucleotidyltransferase activity;5.3453355659376e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.63052335111493e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.70166063130951e-09!GO:0009056;catabolic process;6.81996217447452e-09!GO:0000775;chromosome, pericentric region;9.89821996342445e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.0029674777561e-08!GO:0009150;purine ribonucleotide metabolic process;1.62742811397379e-08!GO:0009060;aerobic respiration;2.36298682335637e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.46141512257805e-08!GO:0008639;small protein conjugating enzyme activity;2.60222401860369e-08!GO:0003899;DNA-directed RNA polymerase activity;2.81846540900774e-08!GO:0016192;vesicle-mediated transport;3.24846500260583e-08!GO:0007005;mitochondrion organization and biogenesis;3.79609643455919e-08!GO:0004842;ubiquitin-protein ligase activity;4.17669434241141e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.91660392612019e-08!GO:0017038;protein import;6.48420021015529e-08!GO:0009117;nucleotide metabolic process;7.8975270299229e-08!GO:0015986;ATP synthesis coupled proton transport;9.68168770859706e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.68168770859706e-08!GO:0005793;ER-Golgi intermediate compartment;9.97047515089446e-08!GO:0043566;structure-specific DNA binding;1.13841930115963e-07!GO:0009108;coenzyme biosynthetic process;1.27907721275526e-07!GO:0019787;small conjugating protein ligase activity;1.30911648836163e-07!GO:0045333;cellular respiration;1.47791901796241e-07!GO:0019829;cation-transporting ATPase activity;1.47791901796241e-07!GO:0003697;single-stranded DNA binding;1.53861126773046e-07!GO:0043623;cellular protein complex assembly;1.57232828107208e-07!GO:0016568;chromatin modification;3.30461874045172e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.53032483136971e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.53032483136971e-07!GO:0009141;nucleoside triphosphate metabolic process;3.93733920047226e-07!GO:0009199;ribonucleoside triphosphate metabolic process;4.49210924277389e-07!GO:0000245;spliceosome assembly;5.55456877096504e-07!GO:0005819;spindle;5.80108156270829e-07!GO:0006099;tricarboxylic acid cycle;5.86443231298005e-07!GO:0046356;acetyl-CoA catabolic process;5.86443231298005e-07!GO:0005762;mitochondrial large ribosomal subunit;6.3766307376594e-07!GO:0000315;organellar large ribosomal subunit;6.3766307376594e-07!GO:0045259;proton-transporting ATP synthase complex;6.66054178218231e-07!GO:0008094;DNA-dependent ATPase activity;6.95886156499836e-07!GO:0007051;spindle organization and biogenesis;7.13858528183223e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.45483727820434e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.45483727820434e-07!GO:0005657;replication fork;7.95820931880755e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.65862234241434e-07!GO:0006084;acetyl-CoA metabolic process;8.73152556043153e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.96994826198533e-07!GO:0009144;purine nucleoside triphosphate metabolic process;8.96994826198533e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.02084503626047e-06!GO:0000786;nucleosome;1.05040909346154e-06!GO:0003924;GTPase activity;1.10615719992269e-06!GO:0032446;protein modification by small protein conjugation;1.26107611925896e-06!GO:0007010;cytoskeleton organization and biogenesis;1.34279997149467e-06!GO:0006793;phosphorus metabolic process;1.38819512899212e-06!GO:0006796;phosphate metabolic process;1.38819512899212e-06!GO:0006754;ATP biosynthetic process;1.81950227865494e-06!GO:0006753;nucleoside phosphate metabolic process;1.81950227865494e-06!GO:0006752;group transfer coenzyme metabolic process;1.87126712516577e-06!GO:0050794;regulation of cellular process;2.04333353991598e-06!GO:0005525;GTP binding;2.10790197311402e-06!GO:0048475;coated membrane;2.13460978231941e-06!GO:0030117;membrane coat;2.13460978231941e-06!GO:0016567;protein ubiquitination;2.42271270053317e-06!GO:0016881;acid-amino acid ligase activity;2.45575796033006e-06!GO:0012501;programmed cell death;2.53902412844319e-06!GO:0000314;organellar small ribosomal subunit;2.54897430142566e-06!GO:0005763;mitochondrial small ribosomal subunit;2.54897430142566e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.64676843673097e-06!GO:0046034;ATP metabolic process;2.91909105972729e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.91909105972729e-06!GO:0005789;endoplasmic reticulum membrane;3.11602552571808e-06!GO:0006915;apoptosis;3.68388395962663e-06!GO:0003712;transcription cofactor activity;3.71234409562737e-06!GO:0005813;centrosome;3.84999062168285e-06!GO:0044431;Golgi apparatus part;4.1384520588303e-06!GO:0051329;interphase of mitotic cell cycle;5.15458397616901e-06!GO:0009109;coenzyme catabolic process;5.96065396089926e-06!GO:0006366;transcription from RNA polymerase II promoter;7.17019961916996e-06!GO:0051187;cofactor catabolic process;7.83614908642395e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.8977854314776e-06!GO:0005667;transcription factor complex;7.97739075137179e-06!GO:0005839;proteasome core complex (sensu Eukaryota);9.239335505341e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.24319655171384e-06!GO:0007017;microtubule-based process;9.96638189616326e-06!GO:0016853;isomerase activity;1.01121967111289e-05!GO:0051246;regulation of protein metabolic process;1.03319029016973e-05!GO:0005815;microtubule organizing center;1.20135499898435e-05!GO:0000075;cell cycle checkpoint;1.27178382822673e-05!GO:0051325;interphase;1.33386416727242e-05!GO:0003724;RNA helicase activity;1.3466411869232e-05!GO:0032561;guanyl ribonucleotide binding;1.7360798906454e-05!GO:0019001;guanyl nucleotide binding;1.7360798906454e-05!GO:0008033;tRNA processing;1.89908115866067e-05!GO:0031988;membrane-bound vesicle;2.13013614219364e-05!GO:0031982;vesicle;2.26021074697226e-05!GO:0051170;nuclear import;2.31269881518652e-05!GO:0006520;amino acid metabolic process;2.77383457215008e-05!GO:0016310;phosphorylation;2.81617037830878e-05!GO:0016741;transferase activity, transferring one-carbon groups;2.89678834600434e-05!GO:0030120;vesicle coat;2.91167525544827e-05!GO:0030662;coated vesicle membrane;2.91167525544827e-05!GO:0006613;cotranslational protein targeting to membrane;2.93749874174122e-05!GO:0044452;nucleolar part;2.99094973673957e-05!GO:0016859;cis-trans isomerase activity;3.07679204470335e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.46497958241127e-05!GO:0008168;methyltransferase activity;3.63773078230003e-05!GO:0005874;microtubule;3.71643946475688e-05!GO:0004298;threonine endopeptidase activity;4.04023306396088e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.08694713744411e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.45671370720219e-05!GO:0000776;kinetochore;4.4734185687533e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.56325713911441e-05!GO:0008219;cell death;4.63790471792066e-05!GO:0016265;death;4.63790471792066e-05!GO:0031410;cytoplasmic vesicle;4.63790471792066e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.31189635061364e-05!GO:0051168;nuclear export;5.47277772603244e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.56890215133118e-05!GO:0000139;Golgi membrane;6.347529300971e-05!GO:0006606;protein import into nucleus;6.46595103872632e-05!GO:0003690;double-stranded DNA binding;6.47332180510782e-05!GO:0006383;transcription from RNA polymerase III promoter;6.58595472376988e-05!GO:0009165;nucleotide biosynthetic process;7.06803325789273e-05!GO:0016363;nuclear matrix;7.29393384537184e-05!GO:0005768;endosome;8.1267781157612e-05!GO:0051427;hormone receptor binding;8.29202685173868e-05!GO:0006730;one-carbon compound metabolic process;9.90069857339949e-05!GO:0045454;cell redox homeostasis;0.000106788982295618!GO:0007264;small GTPase mediated signal transduction;0.000112578017609391!GO:0019222;regulation of metabolic process;0.000120478909808816!GO:0016787;hydrolase activity;0.000128480457809084!GO:0000059;protein import into nucleus, docking;0.00013196404996322!GO:0006302;double-strand break repair;0.000136411837231546!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000136411837231546!GO:0030880;RNA polymerase complex;0.000140306449324941!GO:0043681;protein import into mitochondrion;0.000146343042266611!GO:0019843;rRNA binding;0.000147008429300273!GO:0051052;regulation of DNA metabolic process;0.00015194091593305!GO:0043021;ribonucleoprotein binding;0.000152558381813816!GO:0035257;nuclear hormone receptor binding;0.000176086745467424!GO:0003729;mRNA binding;0.000179713642483923!GO:0000151;ubiquitin ligase complex;0.000192468736690607!GO:0050789;regulation of biological process;0.000217816038948452!GO:0003682;chromatin binding;0.000237929120675619!GO:0006839;mitochondrial transport;0.000244061695754802!GO:0003678;DNA helicase activity;0.000251354143609504!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000253364469172151!GO:0005788;endoplasmic reticulum lumen;0.000281754671612998!GO:0032259;methylation;0.000319572770464627!GO:0003684;damaged DNA binding;0.000323863526957485!GO:0008186;RNA-dependent ATPase activity;0.000326136286064525!GO:0005770;late endosome;0.000342317107942693!GO:0008654;phospholipid biosynthetic process;0.000365706372195496!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000376283897696723!GO:0000428;DNA-directed RNA polymerase complex;0.000376283897696723!GO:0006402;mRNA catabolic process;0.000388768857143965!GO:0043414;biopolymer methylation;0.00039970136637029!GO:0051087;chaperone binding;0.000424611112824722!GO:0048471;perinuclear region of cytoplasm;0.000429227302019166!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000446754536058265!GO:0007006;mitochondrial membrane organization and biogenesis;0.000455388324082944!GO:0005769;early endosome;0.000476084887446844!GO:0007059;chromosome segregation;0.00048919555493565!GO:0006612;protein targeting to membrane;0.000513062216131705!GO:0008250;oligosaccharyl transferase complex;0.000522707048424643!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000546770979288466!GO:0051920;peroxiredoxin activity;0.000563157187238476!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000618743848580959!GO:0031252;leading edge;0.00063194391092322!GO:0006414;translational elongation;0.000640866944417125!GO:0007093;mitotic cell cycle checkpoint;0.00065757183204055!GO:0042802;identical protein binding;0.000664517409172295!GO:0006401;RNA catabolic process;0.000674184408837909!GO:0005684;U2-dependent spliceosome;0.000718337870275751!GO:0006626;protein targeting to mitochondrion;0.000740591700624951!GO:0032508;DNA duplex unwinding;0.000747470451886211!GO:0032392;DNA geometric change;0.000747470451886211!GO:0004576;oligosaccharyl transferase activity;0.000759943655529114!GO:0015980;energy derivation by oxidation of organic compounds;0.000765067756073387!GO:0005798;Golgi-associated vesicle;0.000819055856172098!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00082176188254343!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00082176188254343!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00082176188254343!GO:0009112;nucleobase metabolic process;0.00083451157881561!GO:0006310;DNA recombination;0.000847270390256764!GO:0004004;ATP-dependent RNA helicase activity;0.000964827406548233!GO:0030867;rough endoplasmic reticulum membrane;0.00102795296415651!GO:0006352;transcription initiation;0.0010282285529662!GO:0007052;mitotic spindle organization and biogenesis;0.00104341087704122!GO:0004527;exonuclease activity;0.00106504102207688!GO:0006541;glutamine metabolic process;0.00112761191539125!GO:0008652;amino acid biosynthetic process;0.0011864427854314!GO:0009116;nucleoside metabolic process;0.00119708344951103!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00119708344951103!GO:0000049;tRNA binding;0.00121751514321902!GO:0015631;tubulin binding;0.00125776680793566!GO:0048523;negative regulation of cellular process;0.00127774933144127!GO:0005048;signal sequence binding;0.00139303722971111!GO:0006284;base-excision repair;0.00139479188149243!GO:0044440;endosomal part;0.00144294807381623!GO:0010008;endosome membrane;0.00144294807381623!GO:0007088;regulation of mitosis;0.0014945698261178!GO:0006268;DNA unwinding during replication;0.00152170378169634!GO:0051252;regulation of RNA metabolic process;0.00153970410243!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00161993664577136!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00161993664577136!GO:0006519;amino acid and derivative metabolic process;0.00164380683880942!GO:0016126;sterol biosynthetic process;0.0016762889469282!GO:0006790;sulfur metabolic process;0.00167861931534627!GO:0006144;purine base metabolic process;0.00197222360408365!GO:0043069;negative regulation of programmed cell death;0.00208933959539185!GO:0031324;negative regulation of cellular metabolic process;0.0021088861493017!GO:0046483;heterocycle metabolic process;0.00222273733442595!GO:0030145;manganese ion binding;0.00224952489123789!GO:0016491;oxidoreductase activity;0.00233443272361025!GO:0045786;negative regulation of progression through cell cycle;0.00235971789110756!GO:0000096;sulfur amino acid metabolic process;0.00244709268449529!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00252915840363716!GO:0016272;prefoldin complex;0.00258207016221983!GO:0030118;clathrin coat;0.00263942167295824!GO:0043066;negative regulation of apoptosis;0.00265667109695393!GO:0051539;4 iron, 4 sulfur cluster binding;0.00271498919643187!GO:0042981;regulation of apoptosis;0.00278878536341289!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0028100499554428!GO:0048487;beta-tubulin binding;0.00283516461812393!GO:0019752;carboxylic acid metabolic process;0.0028727796593227!GO:0043067;regulation of programmed cell death;0.00292831069417692!GO:0005791;rough endoplasmic reticulum;0.00294948557796129!GO:0006082;organic acid metabolic process;0.0029526638092879!GO:0033116;ER-Golgi intermediate compartment membrane;0.00305669027197929!GO:0000792;heterochromatin;0.00305669027197929!GO:0044262;cellular carbohydrate metabolic process;0.00310228531871138!GO:0030036;actin cytoskeleton organization and biogenesis;0.00329006220167912!GO:0005905;coated pit;0.00337649374472106!GO:0048500;signal recognition particle;0.00345056735141378!GO:0040029;regulation of gene expression, epigenetic;0.00345056735141378!GO:0006405;RNA export from nucleus;0.00345731616613577!GO:0006275;regulation of DNA replication;0.00348079909622083!GO:0005637;nuclear inner membrane;0.00348541709741997!GO:0000178;exosome (RNase complex);0.00348926012906168!GO:0008022;protein C-terminus binding;0.00360099706912709!GO:0043488;regulation of mRNA stability;0.00360457994771491!GO:0043487;regulation of RNA stability;0.00360457994771491!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00366805703507611!GO:0005885;Arp2/3 protein complex;0.00386032073686508!GO:0018196;peptidyl-asparagine modification;0.00395998297889527!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00395998297889527!GO:0009892;negative regulation of metabolic process;0.00407913297633318!GO:0006338;chromatin remodeling;0.00410526009910258!GO:0006916;anti-apoptosis;0.00432050150268348!GO:0008312;7S RNA binding;0.00443263784664613!GO:0008287;protein serine/threonine phosphatase complex;0.00443263784664613!GO:0005741;mitochondrial outer membrane;0.00445841425729799!GO:0016251;general RNA polymerase II transcription factor activity;0.00447753778707308!GO:0050178;phenylpyruvate tautomerase activity;0.00449237781656549!GO:0006595;polyamine metabolic process;0.00464301248351447!GO:0031072;heat shock protein binding;0.00468044188083206!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00474066458088593!GO:0031323;regulation of cellular metabolic process;0.00526250580540225!GO:0032200;telomere organization and biogenesis;0.0052800953830972!GO:0000723;telomere maintenance;0.0052800953830972!GO:0006611;protein export from nucleus;0.00539530664480575!GO:0065009;regulation of a molecular function;0.00540010343806093!GO:0000725;recombinational repair;0.00544530874044847!GO:0000724;double-strand break repair via homologous recombination;0.00544530874044847!GO:0009451;RNA modification;0.0056384226311058!GO:0051287;NAD binding;0.00567355716940438!GO:0030119;AP-type membrane coat adaptor complex;0.00574176390201286!GO:0016564;transcription repressor activity;0.00576851542878699!GO:0031570;DNA integrity checkpoint;0.00583585093010934!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00583585093010934!GO:0015002;heme-copper terminal oxidase activity;0.00583585093010934!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00583585093010934!GO:0004129;cytochrome-c oxidase activity;0.00583585093010934!GO:0006695;cholesterol biosynthetic process;0.00585897397938172!GO:0030658;transport vesicle membrane;0.00602451633564557!GO:0001824;blastocyst development;0.00608812590579723!GO:0046474;glycerophospholipid biosynthetic process;0.00631367347470967!GO:0043596;nuclear replication fork;0.00644047462672716!GO:0004674;protein serine/threonine kinase activity;0.00644580766461543!GO:0004532;exoribonuclease activity;0.00646749270729673!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00646749270729673!GO:0006350;transcription;0.00647389703295893!GO:0000228;nuclear chromosome;0.00647389703295893!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00647389703295893!GO:0003713;transcription coactivator activity;0.00660882950186006!GO:0005758;mitochondrial intermembrane space;0.00667872131616092!GO:0008092;cytoskeletal protein binding;0.00684303849306933!GO:0031968;organelle outer membrane;0.00687425460707966!GO:0032594;protein transport within lipid bilayer;0.00695188243274797!GO:0032907;transforming growth factor-beta3 production;0.00695188243274797!GO:0032596;protein transport into lipid raft;0.00695188243274797!GO:0032910;regulation of transforming growth factor-beta3 production;0.00695188243274797!GO:0032595;B cell receptor transport within lipid bilayer;0.00695188243274797!GO:0033606;chemokine receptor transport within lipid bilayer;0.00695188243274797!GO:0032600;chemokine receptor transport out of lipid raft;0.00695188243274797!GO:0032599;protein transport out of lipid raft;0.00695188243274797!GO:0032597;B cell receptor transport into lipid raft;0.00695188243274797!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00695188243274797!GO:0003711;transcription elongation regulator activity;0.00701284614376104!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00711255228891118!GO:0045047;protein targeting to ER;0.00711255228891118!GO:0051540;metal cluster binding;0.00743348910630628!GO:0051536;iron-sulfur cluster binding;0.00743348910630628!GO:0008139;nuclear localization sequence binding;0.00772105620090696!GO:0004518;nuclease activity;0.00784518793903297!GO:0030131;clathrin adaptor complex;0.00788550237413932!GO:0007021;tubulin folding;0.00789258098858181!GO:0046467;membrane lipid biosynthetic process;0.00809770708914984!GO:0003714;transcription corepressor activity;0.00837536488649212!GO:0019867;outer membrane;0.00848926176186224!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00855647670894041!GO:0006007;glucose catabolic process;0.0085595050207905!GO:0042393;histone binding;0.00885032829982837!GO:0031124;mRNA 3'-end processing;0.00893493089121277!GO:0016584;nucleosome positioning;0.0090137128789798!GO:0015992;proton transport;0.00902444838560721!GO:0005669;transcription factor TFIID complex;0.00911973686736612!GO:0043022;ribosome binding;0.00912024733079074!GO:0004722;protein serine/threonine phosphatase activity;0.00923431206524427!GO:0005832;chaperonin-containing T-complex;0.0092761596791281!GO:0009081;branched chain family amino acid metabolic process;0.0092761596791281!GO:0005876;spindle microtubule;0.00931124565754991!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00931709625238027!GO:0050662;coenzyme binding;0.00948836822501603!GO:0008180;signalosome;0.00948836822501603!GO:0030027;lamellipodium;0.00954246354575978!GO:0048519;negative regulation of biological process;0.00979613699077297!GO:0031970;organelle envelope lumen;0.00979613699077297!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00993427322237068!GO:0031577;spindle checkpoint;0.00997845590344093!GO:0006270;DNA replication initiation;0.0100328648571202!GO:0006220;pyrimidine nucleotide metabolic process;0.0102196956703756!GO:0006818;hydrogen transport;0.0102875322508966!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0105502020633867!GO:0044454;nuclear chromosome part;0.0106433323566342!GO:0019899;enzyme binding;0.0106557109515272!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0111142336789168!GO:0000209;protein polyubiquitination;0.0111616355280559!GO:0030029;actin filament-based process;0.0111616355280559!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0115936948074773!GO:0003746;translation elongation factor activity;0.0115963778099857!GO:0004003;ATP-dependent DNA helicase activity;0.011662651485042!GO:0009119;ribonucleoside metabolic process;0.0117052384573161!GO:0000922;spindle pole;0.0124774990400318!GO:0009064;glutamine family amino acid metabolic process;0.0124953676411925!GO:0006378;mRNA polyadenylation;0.0127206231274934!GO:0022890;inorganic cation transmembrane transporter activity;0.0127206231274934!GO:0000097;sulfur amino acid biosynthetic process;0.0127335881939883!GO:0051789;response to protein stimulus;0.0127335881939883!GO:0006986;response to unfolded protein;0.0127335881939883!GO:0008408;3'-5' exonuclease activity;0.0128485914118267!GO:0000339;RNA cap binding;0.0128562950098823!GO:0000070;mitotic sister chromatid segregation;0.0130486946010711!GO:0044450;microtubule organizing center part;0.0131456468021117!GO:0030660;Golgi-associated vesicle membrane;0.01317773069864!GO:0045947;negative regulation of translational initiation;0.01317773069864!GO:0016563;transcription activator activity;0.01317773069864!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0132753367352754!GO:0015399;primary active transmembrane transporter activity;0.0132753367352754!GO:0045045;secretory pathway;0.0133957483578659!GO:0016044;membrane organization and biogenesis;0.0134021016334498!GO:0019783;small conjugating protein-specific protease activity;0.0135281292991664!GO:0009303;rRNA transcription;0.0135281292991664!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0137930757797893!GO:0016311;dephosphorylation;0.0139978035125457!GO:0030176;integral to endoplasmic reticulum membrane;0.0149074393773391!GO:0022884;macromolecule transmembrane transporter activity;0.0152671474320899!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0152671474320899!GO:0000819;sister chromatid segregation;0.0153650977803373!GO:0042770;DNA damage response, signal transduction;0.0153650977803373!GO:0030134;ER to Golgi transport vesicle;0.0158074326359772!GO:0035258;steroid hormone receptor binding;0.0158860687306523!GO:0006733;oxidoreduction coenzyme metabolic process;0.0160109418752718!GO:0006289;nucleotide-excision repair;0.0167380175364305!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.016983262658337!GO:0008629;induction of apoptosis by intracellular signals;0.0173175431690653!GO:0001726;ruffle;0.0175400772232443!GO:0006091;generation of precursor metabolites and energy;0.017725087231822!GO:0051053;negative regulation of DNA metabolic process;0.0177818421743026!GO:0000790;nuclear chromatin;0.017857399274867!GO:0043284;biopolymer biosynthetic process;0.0179462110268015!GO:0016835;carbon-oxygen lyase activity;0.0180030526181473!GO:0004843;ubiquitin-specific protease activity;0.0180456937177941!GO:0030133;transport vesicle;0.0180456937177941!GO:0000159;protein phosphatase type 2A complex;0.0181210157427048!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0185579034696346!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0191273847875167!GO:0010257;NADH dehydrogenase complex assembly;0.0191273847875167!GO:0033108;mitochondrial respiratory chain complex assembly;0.0191273847875167!GO:0016791;phosphoric monoester hydrolase activity;0.019376590915884!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0197947784861784!GO:0008632;apoptotic program;0.0199542189519998!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0201359531977113!GO:0008320;protein transmembrane transporter activity;0.02029386267682!GO:0016301;kinase activity;0.0207503907987547!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0210380326424287!GO:0005732;small nucleolar ribonucleoprotein complex;0.0211215630749647!GO:0006400;tRNA modification;0.0211257670306715!GO:0000082;G1/S transition of mitotic cell cycle;0.021223657781495!GO:0048037;cofactor binding;0.0217228925579685!GO:0004221;ubiquitin thiolesterase activity;0.0220660048557072!GO:0005652;nuclear lamina;0.0221821820921301!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0222958384304188!GO:0005663;DNA replication factor C complex;0.0223267075979449!GO:0030496;midbody;0.0223267075979449!GO:0008601;protein phosphatase type 2A regulator activity;0.02275238684861!GO:0005996;monosaccharide metabolic process;0.0229606711452666!GO:0030127;COPII vesicle coat;0.0230327416696302!GO:0012507;ER to Golgi transport vesicle membrane;0.0230327416696302!GO:0016481;negative regulation of transcription;0.0231383358648414!GO:0042769;DNA damage response, detection of DNA damage;0.0232726661490085!GO:0000077;DNA damage checkpoint;0.0234489812376587!GO:0030521;androgen receptor signaling pathway;0.0242149147647136!GO:0005938;cell cortex;0.0245247043352945!GO:0043601;nuclear replisome;0.0245575126660333!GO:0030894;replisome;0.0245575126660333!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.024714525448952!GO:0045039;protein import into mitochondrial inner membrane;0.024714525448952!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0247318217736388!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0247882517485899!GO:0000781;chromosome, telomeric region;0.0249414765492858!GO:0008610;lipid biosynthetic process;0.0250005540628144!GO:0046365;monosaccharide catabolic process;0.0253364565604504!GO:0012506;vesicle membrane;0.0258216565383476!GO:0030132;clathrin coat of coated pit;0.026099425224641!GO:0009308;amine metabolic process;0.026099425224641!GO:0030663;COPI coated vesicle membrane;0.0261296960470593!GO:0030126;COPI vesicle coat;0.0261296960470593!GO:0031123;RNA 3'-end processing;0.0261329752196407!GO:0046128;purine ribonucleoside metabolic process;0.0263219897057919!GO:0042278;purine nucleoside metabolic process;0.0263219897057919!GO:0000175;3'-5'-exoribonuclease activity;0.0273112710433462!GO:0006740;NADPH regeneration;0.0276478359257948!GO:0006098;pentose-phosphate shunt;0.0276478359257948!GO:0010468;regulation of gene expression;0.0281603739674985!GO:0004721;phosphoprotein phosphatase activity;0.0285252481630287!GO:0007004;telomere maintenance via telomerase;0.028730894928056!GO:0019318;hexose metabolic process;0.0290642937623916!GO:0006376;mRNA splice site selection;0.0290642937623916!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0290642937623916!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0293073339058015!GO:0006807;nitrogen compound metabolic process;0.0295819685792453!GO:0009124;nucleoside monophosphate biosynthetic process;0.0296994220806948!GO:0009123;nucleoside monophosphate metabolic process;0.0296994220806948!GO:0008213;protein amino acid alkylation;0.0296994220806948!GO:0006479;protein amino acid methylation;0.0296994220806948!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0296994220806948!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0296994220806948!GO:0008538;proteasome activator activity;0.0299019897132262!GO:0006650;glycerophospholipid metabolic process;0.0307956735645742!GO:0005862;muscle thin filament tropomyosin;0.0309100177259677!GO:0006607;NLS-bearing substrate import into nucleus;0.0310482299759241!GO:0008017;microtubule binding;0.0314169732549409!GO:0030659;cytoplasmic vesicle membrane;0.0318835935009888!GO:0017134;fibroblast growth factor binding;0.0327346695619941!GO:0016790;thiolester hydrolase activity;0.0332254307658773!GO:0007018;microtubule-based movement;0.0333125061104597!GO:0009066;aspartate family amino acid metabolic process;0.0333734067143116!GO:0001889;liver development;0.0336935713395796!GO:0016408;C-acyltransferase activity;0.0337643210321018!GO:0051656;establishment of organelle localization;0.0337808502640383!GO:0030137;COPI-coated vesicle;0.0339805001333659!GO:0016407;acetyltransferase activity;0.0342683360621268!GO:0005784;translocon complex;0.0343410099875927!GO:0008097;5S rRNA binding;0.0344477562267217!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0356653723074121!GO:0044433;cytoplasmic vesicle part;0.0357215639773604!GO:0043086;negative regulation of catalytic activity;0.0357215639773604!GO:0046426;negative regulation of JAK-STAT cascade;0.0357215639773604!GO:0000910;cytokinesis;0.0360653254233669!GO:0003756;protein disulfide isomerase activity;0.0361000684154493!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0361000684154493!GO:0046966;thyroid hormone receptor binding;0.0370796879466014!GO:0031369;translation initiation factor binding;0.0371024883754004!GO:0046489;phosphoinositide biosynthetic process;0.0379821782654594!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385927837825885!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0385927837825885!GO:0051098;regulation of binding;0.0386031227885342!GO:0001725;stress fiber;0.0386959621823142!GO:0032432;actin filament bundle;0.0386959621823142!GO:0006096;glycolysis;0.0393600531677994!GO:0019320;hexose catabolic process;0.0397507145652481!GO:0006278;RNA-dependent DNA replication;0.0397967498918116!GO:0009113;purine base biosynthetic process;0.0402720305529312!GO:0050811;GABA receptor binding;0.0403704021333949!GO:0009083;branched chain family amino acid catabolic process;0.0407780163397076!GO:0016585;chromatin remodeling complex;0.0408511551087489!GO:0035267;NuA4 histone acetyltransferase complex;0.0413382219768096!GO:0031371;ubiquitin conjugating enzyme complex;0.0417722929166837!GO:0017166;vinculin binding;0.0417722929166837!GO:0004523;ribonuclease H activity;0.0421886987555589!GO:0009262;deoxyribonucleotide metabolic process;0.0422737427213182!GO:0046164;alcohol catabolic process;0.0423176958136303!GO:0000726;non-recombinational repair;0.0425790234582558!GO:0031902;late endosome membrane;0.0425823619072158!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0439678803661566!GO:0043189;H4/H2A histone acetyltransferase complex;0.0445943692009685!GO:0000123;histone acetyltransferase complex;0.0459990933240336!GO:0008637;apoptotic mitochondrial changes;0.0460371224686367!GO:0043624;cellular protein complex disassembly;0.0460841084179901!GO:0008276;protein methyltransferase activity;0.0461192173472688!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0462023368949391!GO:0006749;glutathione metabolic process;0.0462023368949391!GO:0005666;DNA-directed RNA polymerase III complex;0.0463604169107478!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0468546799626036!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0468546799626036!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0468546799626036!GO:0008190;eukaryotic initiation factor 4E binding;0.0470224851626706!GO:0006470;protein amino acid dephosphorylation;0.0472167185018472!GO:0006672;ceramide metabolic process;0.0476666759232395!GO:0050790;regulation of catalytic activity;0.0478247970733782!GO:0004239;methionyl aminopeptidase activity;0.0480152430505459!GO:0032984;macromolecular complex disassembly;0.0484366641848843
|sample_id=13425
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|time= day00
|timecourse=Human_iPS_to_neuron_(wt)_1
|top_motifs=OCT4_SOX2{dimer}:3.41377740934;POU2F1..3:2.03513282887;NFY{A,B,C}:2.01839366611;PBX1:1.87758962157;SOX{8,9,10}:1.75047071396;SP1:1.72342575427;T:1.69700135695;E2F1..5:1.62371791588;SNAI1..3:1.51704151686;CUX2:1.44546436949;XCPE1{core}:1.33951878468;FOX{I1,J2}:1.30096343203;GFI1:1.292895771;PATZ1:1.24651112597;SOX2:1.23857587188;NKX6-1,2:1.17037665747;ZEB1:1.10004573093;ONECUT1,2:1.04693708079;MYOD1:1.04568648853;PITX1..3:1.04072869042;CDX1,2,4:1.03947467668;FOXP1:1.03570750203;ZNF143:1.03164084306;IKZF2:0.96987855446;LEF1_TCF7_TCF7L1,2:0.914655313909;SOX17:0.901326777547;TFDP1:0.889867597992;bHLH_family:0.837977890163;CDC5L:0.823862202628;RORA:0.807362098455;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800059963042;TOPORS:0.799527325355;POU3F1..4:0.794652097475;ATF4:0.764154680552;RBPJ:0.725435789176;LMO2:0.71682720219;TBP:0.71298459777;AIRE:0.678943647316;MZF1:0.676546750633;FOXD3:0.623398332394;ARID5B:0.603089867571;HOX{A4,D4}:0.583364023282;ZIC1..3:0.554092622267;EVI1:0.537368319012;ZNF384:0.522654616572;PAX8:0.502178585875;ELK1,4_GABP{A,B1}:0.500689732293;NRF1:0.488668809213;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.480390616819;FOXQ1:0.471842273859;EBF1:0.471288366488;VSX1,2:0.467099013764;YY1:0.449599186384;FOXL1:0.421535496441;ZFP161:0.400151702293;POU5F1:0.396775555722;STAT5{A,B}:0.374737341864;PAX1,9:0.366639585404;NKX2-3_NKX2-5:0.338297108379;ALX1:0.323424621577;KLF4:0.300307792814;NANOG:0.296408996503;MAZ:0.287267480833;UFEwm:0.270016059105;TBX4,5:0.269017534907;ZBTB16:0.262216023809;MTF1:0.165789180929;MYB:0.159657225637;GFI1B:0.154791108559;FOXM1:0.142303168309;LHX3,4:0.132650729994;HOX{A6,A7,B6,B7}:0.0926036596823;HIC1:0.0731826861946;TEAD1:0.0644578136578;NKX2-2,8:0.0590956149299;CREB1:0.0508600495771;MYFfamily:0.0402681517012;JUN:0.0151148455086;MTE{core}:0.00896993026235;TFAP2B:0.00559272786218;HNF4A_NR2F1,2:0.00539505986332;EN1,2:0.00481098916486;REST:-0.000991556945762;BREu{core}:-0.00274007913784;NR5A1,2:-0.00592661935385;CRX:-0.00634259322337;GATA4:-0.108631496736;TP53:-0.129797278281;PAX4:-0.130521253033;PAX5:-0.133230834067;NANOG{mouse}:-0.140930091408;GATA6:-0.155286534707;RFX1:-0.159275276037;ATF5_CREB3:-0.164684507227;RREB1:-0.169628035141;HAND1,2:-0.169872899206;FOXN1:-0.170504579864;FOX{F1,F2,J1}:-0.18120740248;MYBL2:-0.181802751533;STAT1,3:-0.200226984684;MED-1{core}:-0.20642836199;SREBF1,2:-0.208636970266;FOXP3:-0.224970012683;RXR{A,B,G}:-0.231423120884;HOX{A5,B5}:-0.239811043484;ZBTB6:-0.265996246883;ATF2:-0.268054431638;HNF1A:-0.277293408297;POU6F1:-0.27907900392;NKX2-1,4:-0.287491458744;XBP1:-0.292262992986;PAX2:-0.30294382407;PAX3,7:-0.30561058451;POU1F1:-0.349365324066;NKX3-1:-0.354968123675;PRDM1:-0.363133896629;DBP:-0.375082612508;GTF2I:-0.413874177848;ZNF423:-0.424135188599;NFKB1_REL_RELA:-0.427881966543;TFAP4:-0.431747128972;PPARG:-0.435862367433;HIF1A:-0.440957662336;TFAP2{A,C}:-0.445305426133;GCM1,2:-0.459027936801;GTF2A1,2:-0.459257798127;NHLH1,2:-0.461668736788;ESRRA:-0.466138381473;TEF:-0.490563974501;MEF2{A,B,C,D}:-0.520782360609;PRRX1,2:-0.571681316417;HMGA1,2:-0.571986344997;BACH2:-0.577383460413;EGR1..3:-0.593264712234;IKZF1:-0.595591836894;ADNP_IRX_SIX_ZHX:-0.601121302772;NFE2:-0.632618715863;FOX{D1,D2}:-0.65870690489;FOXO1,3,4:-0.673400384442;NFE2L2:-0.700052129915;RFX2..5_RFXANK_RFXAP:-0.703662998916;SPI1:-0.706701686332;HSF1,2:-0.726586016308;FOS_FOS{B,L1}_JUN{B,D}:-0.727747056797;DMAP1_NCOR{1,2}_SMARC:-0.737584196991;SPIB:-0.744289125322;FOSL2:-0.751572762336;AR:-0.755555320639;NR6A1:-0.758726312037;SRF:-0.775853018956;ESR1:-0.776251092239;NKX3-2:-0.777434929953;RUNX1..3:-0.781490805977;ALX4:-0.792983986758;NR1H4:-0.817775293218;SOX5:-0.832281294079;ZNF238:-0.885832901694;PAX6:-0.899139939619;NFE2L1:-0.903002104755;ELF1,2,4:-0.907197345847;HBP1_HMGB_SSRP1_UBTF:-0.92139448332;ZNF148:-0.922594898437;HOXA9_MEIS1:-0.948857101747;SPZ1:-0.950135926599;NFIX:-0.950694987463;ETS1,2:-0.968208009391;HMX1:-0.969588498717;HLF:-0.970692530357;RXRA_VDR{dimer}:-0.98449395072;NR3C1:-1.00487226401;CEBPA,B_DDIT3:-1.05688015415;HES1:-1.07869444521;FOXA2:-1.09411661871;NFIL3:-1.09504904149;AHR_ARNT_ARNT2:-1.1135311383;ATF6:-1.23687236793;TFCP2:-1.26080336583;IRF7:-1.27997384346;BPTF:-1.28161859904;TLX2:-1.30516903019;IRF1,2:-1.30669461144;GZF1:-1.36271689108;GLI1..3:-1.48730182719;STAT2,4,6:-1.48735159049;MAFB:-1.51739409662;TLX1..3_NFIC{dimer}:-1.51740886819;TAL1_TCF{3,4,12}:-1.54754520732;NFATC1..3:-1.56829627397;TGIF1:-1.74459270459;EP300:-1.88855720428;PDX1:-2.02058823746;SMAD1..7,9:-2.07073592358
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13425-144D5;search_select_hide=table117:FF:13425-144D5
}}
}}

Latest revision as of 18:58, 4 June 2020

Name:iPS differentiation to neuron, control donor C11-CRL2429
Species:Human (Homo sapiens)
Library ID:CNhs13822
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
agenewborn
cell typefibroblast-derived iPS
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005689
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13822 CAGE DRX008603 DRR009475
Accession ID Hg19

Library idBAMCTSS
CNhs13822 DRZ000900 DRZ002285
Accession ID Hg38

Library idBAMCTSS
CNhs13822 DRZ012250 DRZ013635
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.105
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.585
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0435
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0.0647
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.672
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0833
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.209
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.121
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.073
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.0647
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0632
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.121
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.735
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0232
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.686
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.0647
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0647
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.607
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0647
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.556
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0647
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.708
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13822

Jaspar motifP-value
MA0002.20.00348
MA0003.10.0666
MA0004.10.91
MA0006.10.317
MA0007.10.988
MA0009.10.985
MA0014.10.133
MA0017.10.0544
MA0018.20.0773
MA0019.10.911
MA0024.11.9446e-5
MA0025.10.305
MA0027.10.341
MA0028.10.11
MA0029.10.733
MA0030.10.273
MA0031.10.188
MA0035.20.994
MA0038.10.00281
MA0039.20.0148
MA0040.10.336
MA0041.10.0718
MA0042.10.498
MA0043.10.249
MA0046.10.17
MA0047.20.0848
MA0048.10.333
MA0050.18.89454e-6
MA0051.10.00229
MA0052.10.163
MA0055.10.173
MA0057.10.361
MA0058.10.92
MA0059.10.988
MA0060.17.73118e-15
MA0061.10.00424
MA0062.20.686
MA0065.20.928
MA0066.10.263
MA0067.10.239
MA0068.10.0047
MA0069.10.652
MA0070.10.282
MA0071.10.829
MA0072.10.999
MA0073.10.965
MA0074.10.657
MA0076.10.272
MA0077.10.0993
MA0078.10.901
MA0079.20.401
MA0080.27.98192e-12
MA0081.10.0627
MA0083.10.0546
MA0084.10.715
MA0087.10.607
MA0088.10.739
MA0090.10.974
MA0091.10.0236
MA0092.10.16
MA0093.10.78
MA0099.24.87729e-14
MA0100.10.978
MA0101.10.0661
MA0102.20.00286
MA0103.10.0819
MA0104.20.844
MA0105.10.00119
MA0106.10.629
MA0107.10.0158
MA0108.21.31306e-6
MA0111.10.859
MA0112.23.67939e-5
MA0113.10.00991
MA0114.10.499
MA0115.10.672
MA0116.10.0145
MA0117.10.82
MA0119.10.00456
MA0122.10.721
MA0124.10.587
MA0125.10.183
MA0131.10.565
MA0135.10.924
MA0136.11.81175e-9
MA0137.20.0911
MA0138.20.73
MA0139.10.402
MA0140.10.349
MA0141.10.477
MA0142.11.27152e-13
MA0143.16.02631e-6
MA0144.10.0334
MA0145.10.307
MA0146.10.093
MA0147.10.848
MA0148.10.0567
MA0149.10.342
MA0150.13.80006e-4
MA0152.10.467
MA0153.10.686
MA0154.10.0164
MA0155.10.891
MA0156.17.61585e-5
MA0157.10.152
MA0159.10.107
MA0160.10.17
MA0162.10.826
MA0163.19.87571e-4
MA0164.10.861
MA0258.10.0215
MA0259.10.96



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13822

Novel motifP-value
10.102
100.15
1000.494
1010.638
1020.635
1030.0403
1040.601
1050.232
1060.0499
1070.557
1080.966
1090.254
110.191
1100.307
1110.0256
1120.214
1130.141
1140.0237
1150.493
1160.84
1170.33
1180.647
1190.209
120.907
1200.91
1210.451
1220.787
1230.796
1240.223
1250.787
1260.484
1270.308
1280.372
1290.252
130.882
1300.42
1310.692
1320.818
1330.069
1340.481
1357.36777e-4
1360.0566
1370.44
1380.207
1390.0182
140.816
1400.0777
1410.36
1420.301
1430.00566
1440.629
1450.553
1460.51
1470.709
1480.0198
1490.00956
150.0911
1500.64
1510.0644
1520.782
1530.169
1540.534
1550.854
1560.414
1570.728
1580.169
1590.167
160.384
1600.444
1610.884
1620.536
1630.643
1640.211
1650.664
1660.576
1670.094
1680.25
1690.00131
170.14
180.137
190.18
20.348
200.864
210.785
220.0889
230.0141
240.614
250.458
260.834
270.243
280.929
290.674
30.138
300.891
310.798
320.0469
330.837
340.52
350.249
360.709
370.236
380.254
390.827
40.698
400.71
410.098
420.305
430.111
440.799
450.377
460.0532
470.829
480.677
490.0884
50.112
500.99
510.44
520.461
530.445
540.345
550.0511
560.517
570.589
580.0967
590.188
60.76
600.073
610.934
620.0277
630.127
640.366
650.0837
660.513
670.257
680.871
690.716
70.52
700.0115
710.079
720.514
730.272
740.371
750.133
760.471
770.237
780.704
790.107
80.206
800.0645
810.331
820.134
830.639
840.495
850.0422
860.518
870.0782
880.828
890.0243
90.0993
900.349
910.176
920.0236
930.114
940.0909
950.948
960.0474
970.659
980.241
990.576



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13822


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)

FF: FANTOM5
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0200005 (iPS differentiation to neuron sample)
0200003 (iPS differentiation to neuron, control sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)

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