FF:10618-108G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005016 | |||
|accession_numbers=CAGE;DRX007851;DRR008723;DRZ000148;DRZ001533;DRZ011498;DRZ012883 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000255,CL:0000039,CL:0000586 | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101575 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101575 | |fonse_cell_line=FF:0101575 | ||
|fonse_cell_line_closure=FF:0101575 | |fonse_cell_line_closure=FF:0101575 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/choriocarcinoma%2520cell%2520line%253aT3M-3.CNhs11820.10618-108G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10618-108G6 | |id=FF:10618-108G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101575 | ||
|is_obsolete= | |||
|library_id=CNhs11820 | |||
|library_id_phase_based=2:CNhs11820 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10618 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10618 | |||
|name=choriocarcinoma cell line:T3M-3 | |name=choriocarcinoma cell line:T3M-3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11820,LSID829,release010,COMPLETED | |profile_hcage=CNhs11820,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.228321221900151,0.090104171961993,0.588975893007005,0,0,-0.160318030086386,0,0.0089778405431532,0.0531375963836935,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.00785372430606447,0,0,-0.0428524178168692,0,0,0,0,0,0,0,0,0,0,0,0,-0.0937043882408453,0,0,0,0,0,0,0,0,0.134997675818238,0,0,0,0,0,-0.0122741606684083,0,-0.0969923612426051,0,0,0.0673445792882629,0,0,0,0,0,0,0,0,0.090104171961993,0,0,0,0,0,0,0,0,0,0.0450520859809965,0,0,0.0450520859809965,0,0,0.090104171961993,0,0,0,0.0368054430155619,-0.128853299445189,0,0,0,0,0.130285870662445,0.00342836857372663,0,0,0,0,0,0,0,0,0,0,0.224249672625302,0,0,0,0,0,0,0.278157302235315,0,0,0,-0.0401021268971027,-0.249212834215073,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0.090104171961993,0,0,0.130285870662445,0.090104171961993,0,0.454007653461232,0,0,0,0,0,0,0,0,-0.157074703323571,0,0.370680484190216,0.548413447483421,0,0,-0.382227000928574,0,0.090104171961993,0,0,0,0.090104171961993,0.090104171961993,0,0,0.100201354947587,0,0.0396916203726781,0,0,0,0,-0.0186252810838506,0.406347670838269,0,-0.09191395789883,0.0217599108846248,0,0,0,0,-0.225188583353327,0,-0.120879483793741,-0.0827201683234173,-0.131507416140814,-0.566185692376931,-0.055712496781182,0,0,0,-0.613861753059714,0.35444590228218,0,0,-0.031675679789881,-0.136297532579663,0,0,-0.391044581551635,0,0.269881338763086,0.00996121943055735,0,0.0886928433043075,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.0431774579297252,0,0.228321221900151,0.377193915004229,0,0.12704569360085,0,0,0.82416229362657,0.212592442377102,-0.0230542118525176,0.0107377942866732,0,0.542376975932311,-0.150372105509736,-0.170981542706799,-0.276303223519808,-0.147401849371139,-0.0998775475878543,0,-0.098301350585204,-0.298416896882807,0.104748846034952,0.216703828011724,0,0.149821955526795,0.35112420338513,0,0,0,0.332744724881366,0,0,0.111655370740119,0.175606062661994,-0.176230750674744,0.213041333109319,0.257896886779395,0.0321883720333525,-0.0395325284566706,-0.457436452896595,0,-0.0382974218189034,0,0.090104171961993,0,0.177689446560667,-0.298056374876118,0.282729925915505,0,-0.15096983882019,-0.0683442610773682,0,-0.212582840377945,-0.279269662424381,0.090104171961993,0,-0.12476957741018,0,0,-0.1791385383356,0,0,0.170237089701491,-0.374803936528807,-0.232855561555545,0,0.0555268659832305,0.090104171961993,-0.214941977101906,0,0.18477636002224,0.0261504602893459,0.16468820650136,0.269763350248051,0,0.0517246099580736,0.688711187442973,0.118820442410241,-0.257706598890378,0.800404574301713,-0.242616201544526,0.0911645745688662,0.289026490680846,-0.0580999412961575,0.126956607367513,-0.0881268324752877,0,-0.599733611769136,-0.451176909721373,0.0493409985838503,-0.0814849357735411,0,-0.189435564197941,0,0.16562465788864,0.0450520859809965,-0.0804209043476787,0.242927041838224,-0.274601168079326,-0.142388926081161,0,-0.0450444517728642,0.451669811056229,0,-0.0123607912913455,-0.0336731183844758,1.14337641527089,-0.150367083334639,0.188024372127618,-0.0842542386329126,0.117076723645503,0,0.0401297076928888,0,0,-0.16959031452827,-0.0071548158642373,0,-0.037299955351394,-0.00743282899650388,-0.0282473011986141,0.112350148465217,0,0,1.11907224643866,0,0.090104171961993,0.143133728497523,0.090104171961993,0.808726572359214,-0.0886381349853959,-0.087530948129625,0.491215007529685,0,0,-0.177527765965176,0,-0.373056195853817,0,0,-0.249881296598824,0,0,0,0,0,0,0,0,0,0,0,0,0.493874250355329,-0.0710221914672043,0.090104171961993,-0.0134515235216359,0,0,0,0,0,0,0,0,-1.42764263231832,-0.104453495527575,-0.0329132437144272,0,0,0.08234410325068,0,-0.215723402553475,0.214060270495758,0.090104171961993,0.0964585154025197,0,0.0450520859809965,0,0,-0.0861409897892114,0,0,0.0450520859809965,0.0450520859809965,0.106957749447696,-0.132067411472507,0,0,0,0.00685673714745327,0,0,0,0,0.339309268529028,0,0,-0.25473625838215,0,-0.0496692446280973,-0.0815818795468414,0,0.214028826225761,-0.908869882098372,0.382237552448923,0,0,0.115846783214342,0,0,0.0287359845012465,0.00773394899632673,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.195765335468918,-0.0922240566585104,0,0,0,0,0,0,0,0.103290166152774,-0.042833804152811,0,0,0,0,0,0.090104171961993,0,0,0.0164297925679626,0.224249672625302,0,0.090104171961993,0,0,-0.0969923612426051,0,0.090104171961993,0,0.228321221900151,0.106275192767387,0,0,0.139934700396968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293977746555034,-0.199589343480427,0.228321221900151,0,0,0,0,0,0,0.0089778405431532,0,0,0,0,0.114436848191174,1.17795178601401,0,0,0.349211268672076,0,-0.160318030086386,0,0,0,0.08234410325068,0,0.321337425216895,0.208648416295241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120815803200914,0,0.00563412897267201,-0.162446628888445,0,0,-0.0661245411376465,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0380610494238998,0,0,0,0,0,0,0,-0.00785372430606447,0,0,0.0353633794311503,0,0,0,0,0,0,-0.0609730139260935,-0.116716588327752,-0.201631148882743,0,0,0.090104171961993,-0.054385572482455,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0.090104171961993,0,0,0,0.186957655355619,0.248847914746076,0,0,0,0,0,0,0,0,0,0,1.54843882481306,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0.166503811495396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125201333655656,0.16468820650136,0,0,0,0,0,0,0,0,0,0,0,0.141905569374622,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.164107685347186,0,0,0,0,0,0,0.090104171961993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228321221900151,0,0,0,0,0,0,0,0,0,0,0,-0.121617728201151,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.460399870553719,0,0,0,0,0.0424670613010742,0,0,0,0,0,0,0,-0.00508439455117325,0,0,0,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=181.29 | |rna_weight_ug=181.29 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1018 | |sample_cell_catalog=RCB1018 | ||
|sample_cell_line=T3M-3 | |sample_cell_line=T3M-3 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.88120349847823e-251!GO:0043231;intracellular membrane-bound organelle;8.80279994796581e-218!GO:0043227;membrane-bound organelle;1.5758332414441e-217!GO:0043226;organelle;2.93617932961613e-217!GO:0043229;intracellular organelle;1.30217783215153e-216!GO:0005737;cytoplasm;2.90491479237846e-170!GO:0044422;organelle part;2.22641535949339e-154!GO:0044446;intracellular organelle part;3.52251092432829e-153!GO:0044444;cytoplasmic part;7.24925545513497e-125!GO:0032991;macromolecular complex;9.09485241493507e-104!GO:0044237;cellular metabolic process;4.22115367610283e-102!GO:0044238;primary metabolic process;2.9263359409186e-101!GO:0030529;ribonucleoprotein complex;1.04209369610904e-97!GO:0005634;nucleus;1.72739092196158e-97!GO:0043170;macromolecule metabolic process;1.90859527710886e-93!GO:0003723;RNA binding;2.12161360885958e-85!GO:0043233;organelle lumen;3.73228688220591e-84!GO:0031974;membrane-enclosed lumen;3.73228688220591e-84!GO:0044428;nuclear part;7.8273552525208e-83!GO:0005739;mitochondrion;7.54050834311012e-73!GO:0005515;protein binding;2.15614141951492e-61!GO:0006396;RNA processing;6.3703279048602e-61!GO:0006412;translation;1.87354820721994e-58!GO:0005840;ribosome;9.24463870779552e-58!GO:0043283;biopolymer metabolic process;9.36030744635313e-56!GO:0010467;gene expression;3.85712796818218e-54!GO:0031981;nuclear lumen;5.87657570654214e-52!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.85823860578015e-51!GO:0031090;organelle membrane;1.36810322098897e-49!GO:0043234;protein complex;2.60801891753096e-49!GO:0003735;structural constituent of ribosome;1.32555439329648e-48!GO:0016043;cellular component organization and biogenesis;2.46176181133389e-47!GO:0019538;protein metabolic process;2.78926699163622e-47!GO:0044429;mitochondrial part;1.39940398378063e-46!GO:0009058;biosynthetic process;1.36417829750001e-45!GO:0009059;macromolecule biosynthetic process;5.56969493340549e-45!GO:0016071;mRNA metabolic process;5.59643546800029e-45!GO:0044249;cellular biosynthetic process;2.38031977988998e-43!GO:0033036;macromolecule localization;8.61665158947734e-43!GO:0015031;protein transport;1.17256021594369e-42!GO:0033279;ribosomal subunit;1.64041883280522e-42!GO:0031967;organelle envelope;2.14498496884436e-42!GO:0031975;envelope;3.87227128914707e-42!GO:0008380;RNA splicing;4.52970644478489e-42!GO:0044260;cellular macromolecule metabolic process;6.82093561895939e-42!GO:0044267;cellular protein metabolic process;1.12978732370961e-41!GO:0006397;mRNA processing;4.92282836373384e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.79172508900334e-38!GO:0043228;non-membrane-bound organelle;1.79172508900334e-38!GO:0043232;intracellular non-membrane-bound organelle;1.79172508900334e-38!GO:0045184;establishment of protein localization;2.17815373334851e-38!GO:0008104;protein localization;2.42749053934668e-38!GO:0006996;organelle organization and biogenesis;5.63703003420175e-36!GO:0065003;macromolecular complex assembly;5.75455639541316e-36!GO:0003676;nucleic acid binding;1.71505236740273e-35!GO:0006259;DNA metabolic process;1.14259469719525e-34!GO:0046907;intracellular transport;3.69451389075371e-33!GO:0022607;cellular component assembly;1.18866429649621e-31!GO:0005654;nucleoplasm;1.8117945588518e-31!GO:0005681;spliceosome;6.02108896111947e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.04167151786306e-30!GO:0005740;mitochondrial envelope;1.66466657539388e-29!GO:0005829;cytosol;5.32679628431559e-29!GO:0019866;organelle inner membrane;1.06755479128279e-28!GO:0000166;nucleotide binding;3.15950988821978e-28!GO:0006886;intracellular protein transport;3.76114853719978e-28!GO:0031966;mitochondrial membrane;1.17005756791551e-27!GO:0005743;mitochondrial inner membrane;1.23299275034062e-26!GO:0006119;oxidative phosphorylation;1.29606573649434e-25!GO:0016070;RNA metabolic process;2.38092130376988e-25!GO:0044451;nucleoplasm part;5.83495288377631e-25!GO:0007049;cell cycle;4.7446115268126e-24!GO:0044455;mitochondrial membrane part;3.44289134937658e-23!GO:0044445;cytosolic part;5.99929079405807e-23!GO:0005730;nucleolus;6.44566968581765e-23!GO:0051649;establishment of cellular localization;2.87469437797056e-22!GO:0015934;large ribosomal subunit;3.20788896828579e-22!GO:0051641;cellular localization;4.55426466738079e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;5.61903134624696e-22!GO:0031980;mitochondrial lumen;7.40761126169831e-22!GO:0005759;mitochondrial matrix;7.40761126169831e-22!GO:0016462;pyrophosphatase activity;8.89429959811386e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.22845298466924e-21!GO:0022618;protein-RNA complex assembly;1.48871284123263e-21!GO:0015935;small ribosomal subunit;2.01001405825216e-21!GO:0017111;nucleoside-triphosphatase activity;1.04239549205643e-20!GO:0006974;response to DNA damage stimulus;1.41650097495333e-20!GO:0016874;ligase activity;3.92401612649792e-20!GO:0032553;ribonucleotide binding;6.14479212827105e-20!GO:0032555;purine ribonucleotide binding;6.14479212827105e-20!GO:0005524;ATP binding;5.39856457722917e-19!GO:0012505;endomembrane system;5.43498755913538e-19!GO:0017076;purine nucleotide binding;8.35978729988165e-19!GO:0006512;ubiquitin cycle;1.30173583817934e-18!GO:0008135;translation factor activity, nucleic acid binding;2.44261008612901e-18!GO:0032559;adenyl ribonucleotide binding;4.48430081829054e-18!GO:0006457;protein folding;5.960713109077e-18!GO:0005694;chromosome;6.95311486565556e-18!GO:0006281;DNA repair;1.90385097357786e-17!GO:0005761;mitochondrial ribosome;2.33323270292035e-17!GO:0000313;organellar ribosome;2.33323270292035e-17!GO:0000278;mitotic cell cycle;2.90032139296956e-17!GO:0051186;cofactor metabolic process;3.03906688162043e-17!GO:0042254;ribosome biogenesis and assembly;4.82775035543907e-17!GO:0005746;mitochondrial respiratory chain;4.86533429069158e-17!GO:0044265;cellular macromolecule catabolic process;5.45779779207894e-17!GO:0030554;adenyl nucleotide binding;1.07915282910996e-16!GO:0016887;ATPase activity;2.32174867893506e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.00890989661341e-16!GO:0003954;NADH dehydrogenase activity;4.00890989661341e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.00890989661341e-16!GO:0022402;cell cycle process;5.15403875841996e-16!GO:0008134;transcription factor binding;7.25149426333653e-16!GO:0051276;chromosome organization and biogenesis;9.07806920623763e-16!GO:0048770;pigment granule;9.69267623783443e-16!GO:0042470;melanosome;9.69267623783443e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03164804163325e-15!GO:0000375;RNA splicing, via transesterification reactions;1.03164804163325e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03164804163325e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.2716568798074e-15!GO:0042623;ATPase activity, coupled;2.06903007268212e-15!GO:0051301;cell division;2.12459294629738e-15!GO:0044427;chromosomal part;2.14655359646209e-15!GO:0043285;biopolymer catabolic process;3.01913580254401e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.37663853689253e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.5705959588116e-15!GO:0005794;Golgi apparatus;4.08464077135612e-15!GO:0009719;response to endogenous stimulus;5.08908137048104e-15!GO:0019941;modification-dependent protein catabolic process;6.17716117960563e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.17716117960563e-15!GO:0044257;cellular protein catabolic process;7.29017520182269e-15!GO:0006605;protein targeting;7.607296715983e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.16446011375358e-15!GO:0009057;macromolecule catabolic process;1.09143917502616e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.10203487512816e-14!GO:0042773;ATP synthesis coupled electron transport;1.10203487512816e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.32234839251164e-14!GO:0006399;tRNA metabolic process;1.61573979894881e-14!GO:0022403;cell cycle phase;2.49462910697728e-14!GO:0006260;DNA replication;2.90738010910551e-14!GO:0044248;cellular catabolic process;3.27409882503385e-14!GO:0006446;regulation of translational initiation;3.77321991351969e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.08054616101227e-14!GO:0045271;respiratory chain complex I;4.08054616101227e-14!GO:0005747;mitochondrial respiratory chain complex I;4.08054616101227e-14!GO:0043412;biopolymer modification;4.71409089278096e-14!GO:0006413;translational initiation;4.92652914567092e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;5.43947325598225e-14!GO:0006732;coenzyme metabolic process;1.1390803542055e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.19479860370256e-13!GO:0031965;nuclear membrane;1.31747190759881e-13!GO:0005635;nuclear envelope;1.64530130325264e-13!GO:0044453;nuclear membrane part;1.87515789603981e-13!GO:0005783;endoplasmic reticulum;1.94869036470591e-13!GO:0016604;nuclear body;2.1250776489256e-13!GO:0006323;DNA packaging;2.25671650666457e-13!GO:0051082;unfolded protein binding;2.38666589952049e-13!GO:0000087;M phase of mitotic cell cycle;2.94081129458474e-13!GO:0044432;endoplasmic reticulum part;4.28595349093487e-13!GO:0007067;mitosis;4.38756899552023e-13!GO:0030163;protein catabolic process;6.80893586216112e-13!GO:0003743;translation initiation factor activity;7.46102466170878e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.98095511285524e-12!GO:0005643;nuclear pore;2.56380270872784e-12!GO:0004386;helicase activity;2.63597770941233e-12!GO:0050657;nucleic acid transport;3.33585881548942e-12!GO:0051236;establishment of RNA localization;3.33585881548942e-12!GO:0050658;RNA transport;3.33585881548942e-12!GO:0016192;vesicle-mediated transport;3.530997043736e-12!GO:0048193;Golgi vesicle transport;4.40656456235481e-12!GO:0006403;RNA localization;5.01691734150233e-12!GO:0006364;rRNA processing;1.13372658978837e-11!GO:0000279;M phase;1.44881889733566e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.45456951950975e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.50890502666142e-11!GO:0016607;nuclear speck;1.69907025033189e-11!GO:0065002;intracellular protein transport across a membrane;1.86937354534547e-11!GO:0006913;nucleocytoplasmic transport;2.17797433844285e-11!GO:0016072;rRNA metabolic process;2.87433796674898e-11!GO:0006464;protein modification process;2.92384366567511e-11!GO:0006461;protein complex assembly;4.10510299748409e-11!GO:0051169;nuclear transport;7.43250294776668e-11!GO:0046930;pore complex;9.82476102377024e-11!GO:0008026;ATP-dependent helicase activity;1.09464036843458e-10!GO:0009259;ribonucleotide metabolic process;1.51048649563051e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5300200354876e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.77571264163125e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.77571264163125e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.77571264163125e-10!GO:0051028;mRNA transport;2.27988847914212e-10!GO:0051188;cofactor biosynthetic process;2.46864166870484e-10!GO:0006163;purine nucleotide metabolic process;3.70940468280714e-10!GO:0015986;ATP synthesis coupled proton transport;3.73346695572624e-10!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.73346695572624e-10!GO:0043038;amino acid activation;5.22397136918813e-10!GO:0006418;tRNA aminoacylation for protein translation;5.22397136918813e-10!GO:0043039;tRNA aminoacylation;5.22397136918813e-10!GO:0016568;chromatin modification;5.50528247019253e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.57002388707635e-10!GO:0043687;post-translational protein modification;7.74934431364041e-10!GO:0003712;transcription cofactor activity;8.9588884375693e-10!GO:0015078;hydrogen ion transmembrane transporter activity;1.02512434186103e-09!GO:0009150;purine ribonucleotide metabolic process;1.04118060273819e-09!GO:0006164;purine nucleotide biosynthetic process;1.34588827465673e-09!GO:0000785;chromatin;1.35870880048603e-09!GO:0009260;ribonucleotide biosynthetic process;1.39949542824308e-09!GO:0005768;endosome;2.28504271449031e-09!GO:0008565;protein transporter activity;2.34083331691209e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.44518932561485e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.48953233211328e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.48953233211328e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.50640923727915e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.65999792233786e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.67718653114508e-09!GO:0009141;nucleoside triphosphate metabolic process;3.9354457714099e-09!GO:0008639;small protein conjugating enzyme activity;5.84944058050664e-09!GO:0005789;endoplasmic reticulum membrane;6.33040970489269e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.34297715173591e-09!GO:0009144;purine nucleoside triphosphate metabolic process;6.34297715173591e-09!GO:0017038;protein import;6.69609381608057e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.78867406239521e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.78867406239521e-09!GO:0006754;ATP biosynthetic process;7.40359134156995e-09!GO:0006753;nucleoside phosphate metabolic process;7.40359134156995e-09!GO:0009055;electron carrier activity;8.37510331563886e-09!GO:0004842;ubiquitin-protein ligase activity;1.05586675815537e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.11141549412235e-08!GO:0046034;ATP metabolic process;1.13059848934962e-08!GO:0006333;chromatin assembly or disassembly;1.49106830137994e-08!GO:0019829;cation-transporting ATPase activity;1.6770156885599e-08!GO:0009108;coenzyme biosynthetic process;1.7024112294353e-08!GO:0043566;structure-specific DNA binding;1.71412129933736e-08!GO:0019787;small conjugating protein ligase activity;1.79633884862867e-08!GO:0065004;protein-DNA complex assembly;2.60233170665485e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.9411017720789e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.38397275367763e-08!GO:0003697;single-stranded DNA binding;3.84732898144078e-08!GO:0016740;transferase activity;3.94903255173834e-08!GO:0009056;catabolic process;4.7880268382202e-08!GO:0006366;transcription from RNA polymerase II promoter;4.90428758658396e-08!GO:0006752;group transfer coenzyme metabolic process;5.36499449471799e-08!GO:0005793;ER-Golgi intermediate compartment;7.47572694172714e-08!GO:0012501;programmed cell death;7.52245501287618e-08!GO:0005667;transcription factor complex;8.1083997703067e-08!GO:0006915;apoptosis;8.1458474272323e-08!GO:0016779;nucleotidyltransferase activity;8.84189514728746e-08!GO:0043623;cellular protein complex assembly;1.27101448367147e-07!GO:0006261;DNA-dependent DNA replication;2.31790204057306e-07!GO:0000074;regulation of progression through cell cycle;2.68063216804827e-07!GO:0045259;proton-transporting ATP synthase complex;2.98314566097187e-07!GO:0051726;regulation of cell cycle;3.05898882025457e-07!GO:0000245;spliceosome assembly;3.26125629172576e-07!GO:0009060;aerobic respiration;3.47812700645452e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.95866092514272e-07!GO:0007005;mitochondrion organization and biogenesis;4.36221944406095e-07!GO:0032446;protein modification by small protein conjugation;5.02694684811984e-07!GO:0051246;regulation of protein metabolic process;5.31319550914139e-07!GO:0044431;Golgi apparatus part;6.06237107355773e-07!GO:0016881;acid-amino acid ligase activity;6.15538119999301e-07!GO:0015630;microtubule cytoskeleton;7.44220463958479e-07!GO:0016787;hydrolase activity;8.62430884126076e-07!GO:0008219;cell death;8.76144816613647e-07!GO:0016265;death;8.76144816613647e-07!GO:0045333;cellular respiration;9.59852802278741e-07!GO:0016567;protein ubiquitination;9.74997112783795e-07!GO:0003713;transcription coactivator activity;1.24156752936569e-06!GO:0003724;RNA helicase activity;1.32120552317623e-06!GO:0005762;mitochondrial large ribosomal subunit;1.8551050670042e-06!GO:0000315;organellar large ribosomal subunit;1.8551050670042e-06!GO:0051329;interphase of mitotic cell cycle;2.04015643032564e-06!GO:0016853;isomerase activity;2.34186740428309e-06!GO:0051427;hormone receptor binding;2.62970077753223e-06!GO:0048475;coated membrane;2.6734232230015e-06!GO:0030117;membrane coat;2.6734232230015e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.95494075230736e-06!GO:0050794;regulation of cellular process;3.13486663632824e-06!GO:0005773;vacuole;3.21531553389882e-06!GO:0005788;endoplasmic reticulum lumen;3.74778958311898e-06!GO:0005813;centrosome;3.86047106869011e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.08535190677773e-06!GO:0016563;transcription activator activity;4.13365762100604e-06!GO:0006084;acetyl-CoA metabolic process;4.40127426508951e-06!GO:0005819;spindle;4.52295379436202e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.82260447986397e-06!GO:0006793;phosphorus metabolic process;5.21597594681951e-06!GO:0006796;phosphate metabolic process;5.21597594681951e-06!GO:0035257;nuclear hormone receptor binding;5.90694546398966e-06!GO:0051325;interphase;6.12130150354181e-06!GO:0008033;tRNA processing;6.42072842936351e-06!GO:0051170;nuclear import;6.539146178673e-06!GO:0008094;DNA-dependent ATPase activity;6.82577693178156e-06!GO:0005815;microtubule organizing center;7.21249283603547e-06!GO:0019222;regulation of metabolic process;7.42888150657424e-06!GO:0000775;chromosome, pericentric region;7.99019093783648e-06!GO:0005770;late endosome;8.37499840534515e-06!GO:0006099;tricarboxylic acid cycle;8.97466427919841e-06!GO:0046356;acetyl-CoA catabolic process;8.97466427919841e-06!GO:0044440;endosomal part;9.05450743602534e-06!GO:0010008;endosome membrane;9.05450743602534e-06!GO:0005657;replication fork;1.01185865223997e-05!GO:0016310;phosphorylation;1.03207922944539e-05!GO:0003899;DNA-directed RNA polymerase activity;1.06792842568501e-05!GO:0022890;inorganic cation transmembrane transporter activity;1.08722469267725e-05!GO:0000314;organellar small ribosomal subunit;1.13105458390844e-05!GO:0005763;mitochondrial small ribosomal subunit;1.13105458390844e-05!GO:0009117;nucleotide metabolic process;1.26209731699134e-05!GO:0000151;ubiquitin ligase complex;1.34720338118388e-05!GO:0006334;nucleosome assembly;1.44770324985596e-05!GO:0031497;chromatin assembly;1.67471876344691e-05!GO:0006606;protein import into nucleus;1.71929465065631e-05!GO:0044452;nucleolar part;1.76540604222806e-05!GO:0030120;vesicle coat;2.05161586408503e-05!GO:0030662;coated vesicle membrane;2.05161586408503e-05!GO:0000139;Golgi membrane;2.09148662120402e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.12613585732995e-05!GO:0051168;nuclear export;2.33946060839526e-05!GO:0043069;negative regulation of programmed cell death;2.5038112347851e-05!GO:0007051;spindle organization and biogenesis;2.64563098512206e-05!GO:0006414;translational elongation;2.75806729059407e-05!GO:0043066;negative regulation of apoptosis;3.0951450028738e-05!GO:0006916;anti-apoptosis;3.15809585059216e-05!GO:0006818;hydrogen transport;3.36677710887328e-05!GO:0048471;perinuclear region of cytoplasm;3.42493786096596e-05!GO:0003690;double-stranded DNA binding;3.69511470152191e-05!GO:0000075;cell cycle checkpoint;3.69723840560452e-05!GO:0043021;ribonucleoprotein binding;3.81130331071537e-05!GO:0019899;enzyme binding;3.88101647570792e-05!GO:0008186;RNA-dependent ATPase activity;3.88154369404059e-05!GO:0051187;cofactor catabolic process;3.89568381566644e-05!GO:0006613;cotranslational protein targeting to membrane;4.07198983012363e-05!GO:0000323;lytic vacuole;4.43105093900738e-05!GO:0005764;lysosome;4.43105093900738e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;5.13365295564722e-05!GO:0006520;amino acid metabolic process;5.20311270793782e-05!GO:0008168;methyltransferase activity;5.33709609591564e-05!GO:0015992;proton transport;5.41654262983406e-05!GO:0016741;transferase activity, transferring one-carbon groups;5.93333366409702e-05!GO:0008654;phospholipid biosynthetic process;6.06421518515463e-05!GO:0009109;coenzyme catabolic process;6.15460231058539e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.91382682808745e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.91382682808745e-05!GO:0031988;membrane-bound vesicle;8.41814712788797e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.40918756949404e-05!GO:0031252;leading edge;0.000102198431987374!GO:0043681;protein import into mitochondrion;0.000123362376299314!GO:0042981;regulation of apoptosis;0.000123531448209721!GO:0004004;ATP-dependent RNA helicase activity;0.000127925440762299!GO:0003682;chromatin binding;0.000131772363148495!GO:0043067;regulation of programmed cell death;0.000158556837996732!GO:0031323;regulation of cellular metabolic process;0.000158556837996732!GO:0005769;early endosome;0.000164675711787116!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00020062388974251!GO:0031982;vesicle;0.00020235246246596!GO:0045454;cell redox homeostasis;0.000226713985647348!GO:0032508;DNA duplex unwinding;0.000230708786296967!GO:0032392;DNA geometric change;0.000230708786296967!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000249780502715805!GO:0015399;primary active transmembrane transporter activity;0.000249780502715805!GO:0031410;cytoplasmic vesicle;0.000280927069557673!GO:0005798;Golgi-associated vesicle;0.000280927069557673!GO:0006402;mRNA catabolic process;0.000312412303495721!GO:0000049;tRNA binding;0.000346045600503876!GO:0035258;steroid hormone receptor binding;0.000351413369474321!GO:0006626;protein targeting to mitochondrion;0.00036525292027802!GO:0006302;double-strand break repair;0.000365716211016507!GO:0000776;kinetochore;0.000394722559156235!GO:0016044;membrane organization and biogenesis;0.000407144838484983!GO:0015980;energy derivation by oxidation of organic compounds;0.000415721178231649!GO:0005839;proteasome core complex (sensu Eukaryota);0.000438736913748893!GO:0005525;GTP binding;0.000439124464155148!GO:0006383;transcription from RNA polymerase III promoter;0.000504471823000186!GO:0006268;DNA unwinding during replication;0.000527233218141307!GO:0006082;organic acid metabolic process;0.000555162144787318!GO:0019752;carboxylic acid metabolic process;0.000555577451219734!GO:0016363;nuclear matrix;0.000578290351231764!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000634401888172147!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000634782084582764!GO:0006839;mitochondrial transport;0.000658654803645501!GO:0000059;protein import into nucleus, docking;0.000658654803645501!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000671787578343265!GO:0006612;protein targeting to membrane;0.000676078823732416!GO:0051052;regulation of DNA metabolic process;0.000692235146118133!GO:0007264;small GTPase mediated signal transduction;0.000693534184718725!GO:0006417;regulation of translation;0.000733922989834292!GO:0031072;heat shock protein binding;0.000736345571293414!GO:0005048;signal sequence binding;0.000744348643708764!GO:0007006;mitochondrial membrane organization and biogenesis;0.000749204391724193!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000777717123311494!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000780250442593755!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000780250442593755!GO:0005684;U2-dependent spliceosome;0.000807107345576486!GO:0016859;cis-trans isomerase activity;0.000809766477098572!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000814909655444158!GO:0009165;nucleotide biosynthetic process;0.000873863731055043!GO:0006352;transcription initiation;0.000885615454825845!GO:0040029;regulation of gene expression, epigenetic;0.000890788579157874!GO:0016564;transcription repressor activity;0.000904293346287167!GO:0003729;mRNA binding;0.000913435351723085!GO:0006091;generation of precursor metabolites and energy;0.000928552807098614!GO:0008250;oligosaccharyl transferase complex;0.000934013521500229!GO:0006350;transcription;0.000934013521500229!GO:0004298;threonine endopeptidase activity;0.000937796088059148!GO:0031324;negative regulation of cellular metabolic process;0.000982286307308479!GO:0006519;amino acid and derivative metabolic process;0.00101017755766548!GO:0004674;protein serine/threonine kinase activity;0.00105678440229464!GO:0007040;lysosome organization and biogenesis;0.00107811482590334!GO:0005885;Arp2/3 protein complex;0.00108297861397389!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00110125637437163!GO:0006405;RNA export from nucleus;0.0011314077731011!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0011351350166204!GO:0007010;cytoskeleton organization and biogenesis;0.0011351350166204!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011351350166204!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011351350166204!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011351350166204!GO:0003684;damaged DNA binding;0.0011933649172481!GO:0030133;transport vesicle;0.0012089523966229!GO:0030880;RNA polymerase complex;0.00122926821178332!GO:0005905;coated pit;0.00122926821178332!GO:0010468;regulation of gene expression;0.00123825401162602!GO:0003746;translation elongation factor activity;0.0012480481834753!GO:0043284;biopolymer biosynthetic process;0.0012480481834753!GO:0051920;peroxiredoxin activity;0.0012480481834753!GO:0032259;methylation;0.00125783114325435!GO:0015631;tubulin binding;0.00129110051682477!GO:0004576;oligosaccharyl transferase activity;0.00148373994597665!GO:0050789;regulation of biological process;0.00151480255237242!GO:0043492;ATPase activity, coupled to movement of substances;0.00152790351735338!GO:0003678;DNA helicase activity;0.00160189225943006!GO:0030118;clathrin coat;0.00167639798741585!GO:0006338;chromatin remodeling;0.00168659229815475!GO:0003924;GTPase activity;0.001722411717779!GO:0046489;phosphoinositide biosynthetic process;0.00180234514758747!GO:0043414;biopolymer methylation;0.00184979925417433!GO:0006401;RNA catabolic process;0.00185127710191532!GO:0046474;glycerophospholipid biosynthetic process;0.00194272504173303!GO:0007052;mitotic spindle organization and biogenesis;0.00199210217796334!GO:0030867;rough endoplasmic reticulum membrane;0.00201820271972825!GO:0033116;ER-Golgi intermediate compartment membrane;0.00202446234871316!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00210490363411472!GO:0046483;heterocycle metabolic process;0.00214189655386573!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00235656793567484!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00240906976996656!GO:0030521;androgen receptor signaling pathway;0.00253194053748285!GO:0016251;general RNA polymerase II transcription factor activity;0.00256295540345437!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00284021844592589!GO:0000428;DNA-directed RNA polymerase complex;0.00284021844592589!GO:0008234;cysteine-type peptidase activity;0.00286188660215867!GO:0046467;membrane lipid biosynthetic process;0.00286779917341034!GO:0006284;base-excision repair;0.0029298702874035!GO:0006611;protein export from nucleus;0.00301424406777502!GO:0016197;endosome transport;0.0030224329877141!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00303816370702317!GO:0015002;heme-copper terminal oxidase activity;0.00303816370702317!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00303816370702317!GO:0004129;cytochrome-c oxidase activity;0.00303816370702317!GO:0048500;signal recognition particle;0.0031437103300196!GO:0044262;cellular carbohydrate metabolic process;0.00321316318489285!GO:0008652;amino acid biosynthetic process;0.00325028246757067!GO:0051789;response to protein stimulus;0.00331439753775477!GO:0006986;response to unfolded protein;0.00331439753775477!GO:0005669;transcription factor TFIID complex;0.00331527499716038!GO:0007093;mitotic cell cycle checkpoint;0.00333280169012668!GO:0007088;regulation of mitosis;0.00338512169669671!GO:0045947;negative regulation of translational initiation;0.00346650200014129!GO:0051087;chaperone binding;0.00351917763020425!GO:0030384;phosphoinositide metabolic process;0.00358407609757151!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00367127671086197!GO:0004527;exonuclease activity;0.0037402023335481!GO:0030119;AP-type membrane coat adaptor complex;0.0037402023335481!GO:0042802;identical protein binding;0.0037402023335481!GO:0007033;vacuole organization and biogenesis;0.00378105501352774!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00404311431103108!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00404402352627097!GO:0009308;amine metabolic process;0.00426081667769082!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00429053226332216!GO:0032561;guanyl ribonucleotide binding;0.00433848433780202!GO:0019001;guanyl nucleotide binding;0.00433848433780202!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00439536309294344!GO:0007265;Ras protein signal transduction;0.00440780279330219!GO:0009451;RNA modification;0.00449209034686949!GO:0045045;secretory pathway;0.00464358135166571!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00466288410251412!GO:0030027;lamellipodium;0.00469214006139163!GO:0006891;intra-Golgi vesicle-mediated transport;0.00469872133434877!GO:0005637;nuclear inner membrane;0.00516574265997033!GO:0009081;branched chain family amino acid metabolic process;0.00526958334745619!GO:0030131;clathrin adaptor complex;0.0052706888361719!GO:0031968;organelle outer membrane;0.00551947175660264!GO:0031326;regulation of cellular biosynthetic process;0.00553482767470549!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00563222536704302!GO:0003702;RNA polymerase II transcription factor activity;0.00568990817122914!GO:0006730;one-carbon compound metabolic process;0.00574538301675134!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00587368326715915!GO:0019867;outer membrane;0.00604314970883309!GO:0003714;transcription corepressor activity;0.00620482685484823!GO:0005741;mitochondrial outer membrane;0.00620482685484823!GO:0000792;heterochromatin;0.0062932637785502!GO:0008139;nuclear localization sequence binding;0.0062932637785502!GO:0000786;nucleosome;0.00639275494880907!GO:0007059;chromosome segregation;0.00642042333975022!GO:0030132;clathrin coat of coated pit;0.00645410034054491!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00654159063864947!GO:0046519;sphingoid metabolic process;0.00654549293730627!GO:0006310;DNA recombination;0.00676596551317628!GO:0030036;actin cytoskeleton organization and biogenesis;0.00697142156230216!GO:0051252;regulation of RNA metabolic process;0.00700383213967054!GO:0000082;G1/S transition of mitotic cell cycle;0.00702317871557472!GO:0045786;negative regulation of progression through cell cycle;0.0070281759792002!GO:0005758;mitochondrial intermembrane space;0.00705104565059737!GO:0006270;DNA replication initiation;0.00717892848376922!GO:0006672;ceramide metabolic process;0.00736152619161167!GO:0006807;nitrogen compound metabolic process;0.00752919371789673!GO:0030518;steroid hormone receptor signaling pathway;0.00781691264839662!GO:0000725;recombinational repair;0.00784908643075714!GO:0000724;double-strand break repair via homologous recombination;0.00784908643075714!GO:0008610;lipid biosynthetic process;0.00804613304373463!GO:0050681;androgen receptor binding;0.00828236777956008!GO:0030029;actin filament-based process;0.00829041712449215!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00832695102551668!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.008446182739737!GO:0000096;sulfur amino acid metabolic process;0.0084823841595323!GO:0003711;transcription elongation regulator activity;0.00880335523586759!GO:0031970;organelle envelope lumen;0.00880335523586759!GO:0006650;glycerophospholipid metabolic process;0.00894268550126251!GO:0006643;membrane lipid metabolic process;0.0092547077944705!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00947932104437967!GO:0045047;protein targeting to ER;0.00947932104437967!GO:0009892;negative regulation of metabolic process;0.00975292528139332!GO:0043022;ribosome binding;0.00975292528139332!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00977202546540351!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00993278919206896!GO:0007017;microtubule-based process;0.00995954296686912!GO:0006506;GPI anchor biosynthetic process;0.00995954296686912!GO:0030176;integral to endoplasmic reticulum membrane;0.00995954296686912!GO:0017166;vinculin binding;0.0100849973503877!GO:0051053;negative regulation of DNA metabolic process;0.0101576044017073!GO:0000339;RNA cap binding;0.0102061791597659!GO:0000910;cytokinesis;0.0102389444301004!GO:0018196;peptidyl-asparagine modification;0.0103122939441572!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0103122939441572!GO:0043596;nuclear replication fork;0.0105045315244544!GO:0016272;prefoldin complex;0.0106742046925169!GO:0008312;7S RNA binding;0.0107287141356368!GO:0004518;nuclease activity;0.0109528654650304!GO:0000922;spindle pole;0.0111932656664265!GO:0000123;histone acetyltransferase complex;0.0113184614417251!GO:0006505;GPI anchor metabolic process;0.0115596094541543!GO:0005774;vacuolar membrane;0.011631578889957!GO:0006892;post-Golgi vesicle-mediated transport;0.0117442894114053!GO:0019843;rRNA binding;0.011801892988659!GO:0006607;NLS-bearing substrate import into nucleus;0.0123225586544417!GO:0008276;protein methyltransferase activity;0.0123684544301581!GO:0003725;double-stranded RNA binding;0.0127163082562402!GO:0005832;chaperonin-containing T-complex;0.0131907927432363!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0138809470206304!GO:0051539;4 iron, 4 sulfur cluster binding;0.0146206418168142!GO:0006778;porphyrin metabolic process;0.014659217068228!GO:0033013;tetrapyrrole metabolic process;0.014659217068228!GO:0016860;intramolecular oxidoreductase activity;0.0147254007042671!GO:0007021;tubulin folding;0.0147927312449979!GO:0030663;COPI coated vesicle membrane;0.0149019485692256!GO:0030126;COPI vesicle coat;0.0149019485692256!GO:0043189;H4/H2A histone acetyltransferase complex;0.0149050752066887!GO:0006595;polyamine metabolic process;0.0149421627379417!GO:0046983;protein dimerization activity;0.0155603494991629!GO:0008017;microtubule binding;0.015591160820438!GO:0009303;rRNA transcription;0.0158474891461167!GO:0022406;membrane docking;0.0158965702046535!GO:0048278;vesicle docking;0.0158965702046535!GO:0008286;insulin receptor signaling pathway;0.0158965702046535!GO:0009889;regulation of biosynthetic process;0.0161364475094255!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0161364475094255!GO:0003756;protein disulfide isomerase activity;0.016148654584435!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.016148654584435!GO:0035267;NuA4 histone acetyltransferase complex;0.0163246117710975!GO:0032774;RNA biosynthetic process;0.016408707433588!GO:0031901;early endosome membrane;0.0166173196688629!GO:0042393;histone binding;0.0167888619982605!GO:0006275;regulation of DNA replication;0.0174933395713052!GO:0031570;DNA integrity checkpoint;0.0179852342717691!GO:0005791;rough endoplasmic reticulum;0.0184365509119232!GO:0006351;transcription, DNA-dependent;0.0184365509119232!GO:0016491;oxidoreductase activity;0.0185107723181071!GO:0006497;protein amino acid lipidation;0.0189059246420115!GO:0030134;ER to Golgi transport vesicle;0.0193989850694576!GO:0006289;nucleotide-excision repair;0.0199112208409391!GO:0016584;nucleosome positioning;0.0202365331915958!GO:0045767;regulation of anti-apoptosis;0.0211032658419739!GO:0046966;thyroid hormone receptor binding;0.0214994372363797!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0215728429156098!GO:0010257;NADH dehydrogenase complex assembly;0.0215728429156098!GO:0033108;mitochondrial respiratory chain complex assembly;0.0215728429156098!GO:0000086;G2/M transition of mitotic cell cycle;0.0221255884768185!GO:0031124;mRNA 3'-end processing;0.0222378541964501!GO:0031902;late endosome membrane;0.0224241285660846!GO:0006376;mRNA splice site selection;0.0227598138249947!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0227598138249947!GO:0042158;lipoprotein biosynthetic process;0.0229839946632377!GO:0008022;protein C-terminus binding;0.0231980212218545!GO:0048523;negative regulation of cellular process;0.0232785368540253!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0237395673157495!GO:0004003;ATP-dependent DNA helicase activity;0.0248232104704067!GO:0030658;transport vesicle membrane;0.0250817234157905!GO:0044437;vacuolar part;0.0252149122863577!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0257973934011705!GO:0045039;protein import into mitochondrial inner membrane;0.0257973934011705!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0260780284105617!GO:0006779;porphyrin biosynthetic process;0.0265084870823856!GO:0033014;tetrapyrrole biosynthetic process;0.0265084870823856!GO:0031529;ruffle organization and biogenesis;0.0265497579183745!GO:0006904;vesicle docking during exocytosis;0.026635391404384!GO:0051101;regulation of DNA binding;0.0273301415305117!GO:0016481;negative regulation of transcription;0.0275171172103199!GO:0000178;exosome (RNase complex);0.0275844491998791!GO:0042168;heme metabolic process;0.0278299264828859!GO:0005732;small nucleolar ribonucleoprotein complex;0.0278299264828859!GO:0031625;ubiquitin protein ligase binding;0.02861083901834!GO:0008180;signalosome;0.0288882825298222!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0290219553326365!GO:0008097;5S rRNA binding;0.029319933941095!GO:0000790;nuclear chromatin;0.0293259007220549!GO:0005876;spindle microtubule;0.0304352355844799!GO:0006144;purine base metabolic process;0.0305228095279255!GO:0043601;nuclear replisome;0.0309352886648083!GO:0030894;replisome;0.0309352886648083!GO:0006400;tRNA modification;0.0310266344447049!GO:0006378;mRNA polyadenylation;0.0320381390922429!GO:0019783;small conjugating protein-specific protease activity;0.0322828986594507!GO:0048487;beta-tubulin binding;0.0324155054410543!GO:0030833;regulation of actin filament polymerization;0.0324652279219699!GO:0008156;negative regulation of DNA replication;0.032738664730034!GO:0032153;cell division site;0.0337140198831672!GO:0032155;cell division site part;0.0337140198831672!GO:0042026;protein refolding;0.034055164125809!GO:0051540;metal cluster binding;0.0349781381851725!GO:0051536;iron-sulfur cluster binding;0.0349781381851725!GO:0000118;histone deacetylase complex;0.0350002958349381!GO:0005996;monosaccharide metabolic process;0.0355051982919526!GO:0006897;endocytosis;0.0355669250391291!GO:0010324;membrane invagination;0.0355669250391291!GO:0005874;microtubule;0.0356094321687159!GO:0019318;hexose metabolic process;0.0361865849416368!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0366144274533999!GO:0005869;dynactin complex;0.0373266187376448!GO:0031301;integral to organelle membrane;0.038117786924152!GO:0000152;nuclear ubiquitin ligase complex;0.0383478740351949!GO:0001726;ruffle;0.0386350626366928!GO:0006007;glucose catabolic process;0.0386513013483766!GO:0035259;glucocorticoid receptor binding;0.0390510772198824!GO:0051098;regulation of binding;0.0392587173423316!GO:0005083;small GTPase regulator activity;0.0403085340476624!GO:0004185;serine carboxypeptidase activity;0.0408846966951352!GO:0005784;translocon complex;0.0409983681454485!GO:0008092;cytoskeletal protein binding;0.0419263637668853!GO:0000287;magnesium ion binding;0.0421566206813301!GO:0006541;glutamine metabolic process;0.0439706798253178!GO:0001701;in utero embryonic development;0.0439706798253178!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0439867646934145!GO:0030137;COPI-coated vesicle;0.0448950606756338!GO:0008287;protein serine/threonine phosphatase complex;0.0452063634112511!GO:0009112;nucleobase metabolic process;0.0456217772733828!GO:0042770;DNA damage response, signal transduction;0.0457298722341159!GO:0044450;microtubule organizing center part;0.0461759978180676!GO:0050178;phenylpyruvate tautomerase activity;0.0462994227558823!GO:0030125;clathrin vesicle coat;0.0465402257793449!GO:0030665;clathrin coated vesicle membrane;0.0465402257793449!GO:0016407;acetyltransferase activity;0.0465402257793449!GO:0009083;branched chain family amino acid catabolic process;0.0468659146615504!GO:0004239;methionyl aminopeptidase activity;0.0471334539809517!GO:0030127;COPII vesicle coat;0.0472320820236799!GO:0012507;ER to Golgi transport vesicle membrane;0.0472320820236799!GO:0045334;clathrin-coated endocytic vesicle;0.0475593803950041!GO:0006306;DNA methylation;0.0478219820700684!GO:0006305;DNA alkylation;0.0478219820700684!GO:0004659;prenyltransferase activity;0.0479022934625042!GO:0000097;sulfur amino acid biosynthetic process;0.0480966734796499!GO:0016417;S-acyltransferase activity;0.0483800191028481!GO:0030522;intracellular receptor-mediated signaling pathway;0.0485634333460688!GO:0004843;ubiquitin-specific protease activity;0.0486035072147794!GO:0006406;mRNA export from nucleus;0.0496537744883463 | |||
|sample_id=10618 | |sample_id=10618 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=chorioamniotic membrane | |sample_tissue=chorioamniotic membrane | ||
|top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262 | |top_motifs=VSX1,2:2.23307754789;SNAI1..3:1.56633807648;HOXA9_MEIS1:1.4061433732;RORA:1.39103643952;PITX1..3:1.27644048852;PAX1,9:1.22000757533;ESRRA:1.21921406967;ZEB1:1.19721557635;MYOD1:1.17391624087;HOX{A6,A7,B6,B7}:1.1626361047;bHLH_family:1.12117607961;FOXP1:1.05480939124;FOXD3:1.04986826276;ELK1,4_GABP{A,B1}:1.01691276425;HOX{A5,B5}:0.991283269922;TEAD1:0.945380708158;FOXQ1:0.846904527752;XCPE1{core}:0.815137264543;SP1:0.734982431243;LMO2:0.714978039976;NFY{A,B,C}:0.710707273501;CDC5L:0.659842806402;GATA6:0.619743470237;OCT4_SOX2{dimer}:0.611147501923;FOXN1:0.608183884622;TOPORS:0.593853851666;ZNF384:0.531194489597;RBPJ:0.512898947138;HLF:0.512648732815;ZNF143:0.495998119232;HIF1A:0.473482997057;E2F1..5:0.469193622588;NKX3-2:0.459150558942;NRF1:0.436142399324;POU1F1:0.433942465902;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.428494449728;PRRX1,2:0.421305851503;CUX2:0.406110578065;POU2F1..3:0.381747034497;FOX{F1,F2,J1}:0.370528032615;FOXA2:0.357673066999;BREu{core}:0.353517418122;ALX1:0.344272571074;AIRE:0.337100672604;LHX3,4:0.336167847868;GFI1:0.324296593296;SREBF1,2:0.317666045391;TEF:0.257471704476;CEBPA,B_DDIT3:0.252786315649;SOX17:0.217514096765;LEF1_TCF7_TCF7L1,2:0.189510261167;MYB:0.188694293108;PAX4:0.159036470206;STAT5{A,B}:0.137557331954;ADNP_IRX_SIX_ZHX:0.129129822223;HNF1A:0.112471154337;PBX1:0.107215398337;NFIX:0.0727034884098;ZFP161:0.0719397354401;HNF4A_NR2F1,2:0.0402222465827;TFDP1:0.0354004915336;MED-1{core}:0.024679020233;CRX:0.0137058893087;FOX{I1,J2}:0.00186775140456;EVI1:-0.0100560285006;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0115182627335;YY1:-0.0128849095417;TP53:-0.0147089097407;KLF4:-0.0190960789644;FOXL1:-0.0353646021572;PAX2:-0.036092693403;IKZF1:-0.0462838961689;MYBL2:-0.0474575083855;HOX{A4,D4}:-0.0521869549708;POU6F1:-0.0644032318247;PDX1:-0.0795948795333;ONECUT1,2:-0.079944171799;SOX5:-0.081727704697;NFE2L2:-0.125293664673;NANOG:-0.168832086023;PATZ1:-0.168988653588;ESR1:-0.171760025514;ELF1,2,4:-0.18468212615;PAX3,7:-0.188230214857;IKZF2:-0.193303703673;SOX{8,9,10}:-0.214453562008;TBX4,5:-0.220889493759;ZBTB16:-0.226609990225;ZNF423:-0.250272596867;TFAP2B:-0.259089766422;RFX2..5_RFXANK_RFXAP:-0.298189502713;ZIC1..3:-0.304355670421;ARID5B:-0.310537052761;CREB1:-0.31268283381;EN1,2:-0.314347707748;ALX4:-0.324323596005;GATA4:-0.343343644407;NR5A1,2:-0.343662141152;TFAP2{A,C}:-0.347266751297;FOS_FOS{B,L1}_JUN{B,D}:-0.35182623293;SOX2:-0.360130757254;CDX1,2,4:-0.370478927422;MTF1:-0.376331995192;STAT2,4,6:-0.385469185579;NFE2:-0.401191339534;ZNF238:-0.413252293677;XBP1:-0.418210400069;BACH2:-0.424920385528;EGR1..3:-0.427795874909;NKX2-3_NKX2-5:-0.435042781205;EBF1:-0.457085004207;ATF4:-0.472091271433;MEF2{A,B,C,D}:-0.479766882534;ATF2:-0.483337831345;NFKB1_REL_RELA:-0.501712454803;SPIB:-0.513832901274;AHR_ARNT_ARNT2:-0.536469161984;DMAP1_NCOR{1,2}_SMARC:-0.537356642518;RUNX1..3:-0.545664619454;FOSL2:-0.550032985257;RFX1:-0.566668814518;FOXO1,3,4:-0.56880281698;STAT1,3:-0.583632413149;GCM1,2:-0.588992650124;SPI1:-0.590924116669;ZNF148:-0.592484420862;ETS1,2:-0.600526156286;TAL1_TCF{3,4,12}:-0.60128056609;ATF5_CREB3:-0.603925179831;DBP:-0.613781996138;HMGA1,2:-0.617369402191;FOXP3:-0.618812603457;NKX2-1,4:-0.622953322014;NKX2-2,8:-0.628497377422;NR1H4:-0.650602654264;UFEwm:-0.65239663206;FOXM1:-0.670976397548;NFIL3:-0.672565942749;ZBTB6:-0.674433131678;TGIF1:-0.704790017588;HES1:-0.706934659302;GTF2I:-0.707571498749;SPZ1:-0.713571880208;PAX8:-0.714120856378;HIC1:-0.726879040025;GFI1B:-0.741352362366;BPTF:-0.756040500715;PAX6:-0.768505417932;FOX{D1,D2}:-0.76853058416;MAFB:-0.768598683742;NFE2L1:-0.774980633645;MYFfamily:-0.793519530897;GTF2A1,2:-0.793798478688;MAZ:-0.796013348502;POU5F1:-0.797468508066;PAX5:-0.835949033254;JUN:-0.847904985538;NKX6-1,2:-0.850814596657;TLX1..3_NFIC{dimer}:-0.857765794073;TFAP4:-0.864366464577;HAND1,2:-0.886363092492;NR3C1:-0.892767888309;GZF1:-0.91220078359;REST:-0.951416050006;POU3F1..4:-0.966639068891;HMX1:-0.970020838544;NHLH1,2:-0.971601842836;AR:-1.02546253325;RREB1:-1.03736462965;ATF6:-1.05855520736;T:-1.0633470261;TBP:-1.10131626602;MTE{core}:-1.12426169466;IRF7:-1.12833091923;PRDM1:-1.15357501854;HBP1_HMGB_SSRP1_UBTF:-1.17546522142;NKX3-1:-1.19084514848;SRF:-1.19319707634;NFATC1..3:-1.24200685134;TLX2:-1.24576720578;MZF1:-1.24576825868;TFCP2:-1.31471380291;HSF1,2:-1.33967612609;RXRA_VDR{dimer}:-1.34213215097;PPARG:-1.3546437829;NR6A1:-1.41206837723;NANOG{mouse}:-1.43452395806;GLI1..3:-1.52602417886;IRF1,2:-1.55080468711;EP300:-1.57292862467;RXR{A,B,G}:-1.61041433671;SMAD1..7,9:-2.01300367262 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10618-108G6;search_select_hide=table117:FF:10618-108G6 | |||
}} | }} | ||
Latest revision as of 14:31, 3 June 2020
| Name: | choriocarcinoma cell line:T3M-3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11820 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11820
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11820
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.803 |
| 10 | 10 | 0.937 |
| 100 | 100 | 0.0656 |
| 101 | 101 | 0.706 |
| 102 | 102 | 0.518 |
| 103 | 103 | 0.101 |
| 104 | 104 | 0.17 |
| 105 | 105 | 0.55 |
| 106 | 106 | 0.0194 |
| 107 | 107 | 0.672 |
| 108 | 108 | 0.716 |
| 109 | 109 | 0.0812 |
| 11 | 11 | 0.824 |
| 110 | 110 | 0.271 |
| 111 | 111 | 0.672 |
| 112 | 112 | 0.247 |
| 113 | 113 | 0.14 |
| 114 | 114 | 0.314 |
| 115 | 115 | 0.886 |
| 116 | 116 | 0.569 |
| 117 | 117 | 0.271 |
| 118 | 118 | 0.366 |
| 119 | 119 | 0.875 |
| 12 | 12 | 0.773 |
| 120 | 120 | 0.735 |
| 121 | 121 | 0.955 |
| 122 | 122 | 0.811 |
| 123 | 123 | 0.0186 |
| 124 | 124 | 0.956 |
| 125 | 125 | 0.649 |
| 126 | 126 | 0.991 |
| 127 | 127 | 0.621 |
| 128 | 128 | 0.168 |
| 129 | 129 | 0.643 |
| 13 | 13 | 0.00889 |
| 130 | 130 | 0.923 |
| 131 | 131 | 0.238 |
| 132 | 132 | 0.907 |
| 133 | 133 | 6.42448e-4 |
| 134 | 134 | 0.767 |
| 135 | 135 | 0.0195 |
| 136 | 136 | 0.0347 |
| 137 | 137 | 0.0302 |
| 138 | 138 | 0.92 |
| 139 | 139 | 0.565 |
| 14 | 14 | 0.861 |
| 140 | 140 | 0.569 |
| 141 | 141 | 0.123 |
| 142 | 142 | 0.25 |
| 143 | 143 | 0.0291 |
| 144 | 144 | 0.0419 |
| 145 | 145 | 0.891 |
| 146 | 146 | 0.937 |
| 147 | 147 | 0.312 |
| 148 | 148 | 0.109 |
| 149 | 149 | 0.528 |
| 15 | 15 | 0.743 |
| 150 | 150 | 0.258 |
| 151 | 151 | 0.198 |
| 152 | 152 | 0.899 |
| 153 | 153 | 0.439 |
| 154 | 154 | 0.856 |
| 155 | 155 | 0.307 |
| 156 | 156 | 0.625 |
| 157 | 157 | 0.802 |
| 158 | 158 | 0.597 |
| 159 | 159 | 0.914 |
| 16 | 16 | 0.65 |
| 160 | 160 | 0.752 |
| 161 | 161 | 0.529 |
| 162 | 162 | 0.394 |
| 163 | 163 | 0.359 |
| 164 | 164 | 0.796 |
| 165 | 165 | 0.181 |
| 166 | 166 | 0.0142 |
| 167 | 167 | 0.611 |
| 168 | 168 | 0.0341 |
| 169 | 169 | 0.913 |
| 17 | 17 | 0.445 |
| 18 | 18 | 0.77 |
| 19 | 19 | 0.384 |
| 2 | 2 | 0.34 |
| 20 | 20 | 0.356 |
| 21 | 21 | 0.6 |
| 22 | 22 | 0.692 |
| 23 | 23 | 0.127 |
| 24 | 24 | 0.85 |
| 25 | 25 | 0.478 |
| 26 | 26 | 0.976 |
| 27 | 27 | 0.473 |
| 28 | 28 | 0.918 |
| 29 | 29 | 0.606 |
| 3 | 3 | 0.987 |
| 30 | 30 | 0.722 |
| 31 | 31 | 0.417 |
| 32 | 32 | 0.142 |
| 33 | 33 | 0.936 |
| 34 | 34 | 0.59 |
| 35 | 35 | 0.214 |
| 36 | 36 | 0.0646 |
| 37 | 37 | 0.707 |
| 38 | 38 | 0.528 |
| 39 | 39 | 0.124 |
| 4 | 4 | 0.375 |
| 40 | 40 | 0.0359 |
| 41 | 41 | 0.0475 |
| 42 | 42 | 0.481 |
| 43 | 43 | 0.384 |
| 44 | 44 | 0.915 |
| 45 | 45 | 0.937 |
| 46 | 46 | 0.501 |
| 47 | 47 | 0.482 |
| 48 | 48 | 0.525 |
| 49 | 49 | 0.637 |
| 5 | 5 | 0.468 |
| 50 | 50 | 0.514 |
| 51 | 51 | 0.919 |
| 52 | 52 | 0.708 |
| 53 | 53 | 0.627 |
| 54 | 54 | 0.948 |
| 55 | 55 | 0.943 |
| 56 | 56 | 0.664 |
| 57 | 57 | 0.0418 |
| 58 | 58 | 0.994 |
| 59 | 59 | 0.0799 |
| 6 | 6 | 0.102 |
| 60 | 60 | 0.363 |
| 61 | 61 | 0.404 |
| 62 | 62 | 0.598 |
| 63 | 63 | 0.655 |
| 64 | 64 | 0.457 |
| 65 | 65 | 0.763 |
| 66 | 66 | 0.0519 |
| 67 | 67 | 0.611 |
| 68 | 68 | 0.1 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.205 |
| 70 | 70 | 0.142 |
| 71 | 71 | 0.147 |
| 72 | 72 | 0.119 |
| 73 | 73 | 0.974 |
| 74 | 74 | 0.225 |
| 75 | 75 | 0.976 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.781 |
| 78 | 78 | 0.274 |
| 79 | 79 | 0.151 |
| 8 | 8 | 0.526 |
| 80 | 80 | 0.0908 |
| 81 | 81 | 0.456 |
| 82 | 82 | 0.57 |
| 83 | 83 | 0.216 |
| 84 | 84 | 0.953 |
| 85 | 85 | 0.0814 |
| 86 | 86 | 0.246 |
| 87 | 87 | 0.561 |
| 88 | 88 | 0.641 |
| 89 | 89 | 0.0542 |
| 9 | 9 | 0.148 |
| 90 | 90 | 0.709 |
| 91 | 91 | 0.0684 |
| 92 | 92 | 0.285 |
| 93 | 93 | 0.815 |
| 94 | 94 | 0.825 |
| 95 | 95 | 0.068 |
| 96 | 96 | 0.366 |
| 97 | 97 | 0.444 |
| 98 | 98 | 0.66 |
| 99 | 99 | 0.662 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11820
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101575 choriocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101575 (choriocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
