FF:10435-106E3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004765 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473;DRZ011438;DRZ012823 | ||
| | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104,FF:0104973 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100104 | |fonse_cell_line=FF:0100104 | ||
|fonse_cell_line_closure=FF:0100104 | |fonse_cell_line_closure=FF:0100104 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10435-106E3 | |id=FF:10435-106E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0104973 | ||
|is_obsolete= | |||
|library_id=CNhs11715 | |||
|library_id_phase_based=2:CNhs11715 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10435 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10435 | |||
|name=Hodgkin's lymphoma cell line:HD-Mar2 | |name=Hodgkin's lymphoma cell line:HD-Mar2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11715,LSID819,release009,COMPLETED | |profile_hcage=CNhs11715,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.114515268119704,0.506141682690719,-0.118558603003605,0.377314370382196,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0.158803529189909,0,-0.153323010348428,0,0,0,0.0794017645949545,0,0.513791075332295,0,0,0.30887241007512,0,0,0,0,0,0,0,0,0,0,0,0,0.116656481243703,0.366308867229522,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.108156333892169,0,0.89552854962674,0,0,0.177489670992994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124365950687632,0,0,0,0,0,0,-0.388512941473307,0,0,0,0.094490468569711,-0.0523938735059595,0,0,0,0,-0.0980353512377064,0.475371968574137,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0.120444819775539,0,0,0,-0.00891337770659462,-0.025277345063574,0,0,0.158803529189909,0,0,0 | |||
|repeat_enrich_byname=0,0,0.158803529189909,0,-0.0980353512377064,0,0,0.366308867229522,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.474086218752008,0.131318155682619,0,0,-0.347877322314616,0,0,0,0,0.158803529189909,0,0,0,0,-0.128119866952565,0,0.108390977600594,0,0,0,0,0.0297597102324067,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.0493261694073335,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.192683968571468,0.0996318835292477,0,0,0,-0.484767735459416,-0.652070046163366,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.535063216388204,-0.248868050382253,0,0.0206957393585035,0,0.158803529189909,0,0,0,0.27483329820609,0,0,0,0,0,-0.0574934668214365,0.369644524633438,0,0,0,0,-0.252532962348632,0,-0.0398509694571393,-0.373286155956567,-0.174746979188611,0.0212736032144953,0.314706985864737,0,-0.302389727009913,-0.321071796031498,-0.359830942042338,0.094490468569711,-0.147401849371139,-0.189981719549847,0,-0.421874177529922,-0.786272629114012,-0.060903872837781,-0.388512941473307,0.0236154225067586,-1.2314085082871,0.232585551882574,0,0,-0.0775089264793031,-0.202996275541947,0,0,-0.490114714476774,-0.054002935170457,-0.67098743647571,-0.881500983864423,-0.245353731507053,0.273743813826669,0.288598277176468,-0.182603154690504,0,0.517709435791237,-0.033856638469339,0,-0.0879523981800832,-0.0829457572569043,-0.129650495841046,0.335819021661126,0,0.315194658540354,-0.0683442610773682,0,-0.576735188989078,-0.0419779185592393,0,-0.256766239448829,-0.13694823101743,0,0,0.27483329820609,0,0,0.41961876567035,0.490386050539777,0.0419777366505457,0,-0.0532819664464135,0.0327109035170097,0.130790760663201,0,-0.147311552085719,-0.202170761610805,-0.169936752918903,0.365162365614746,0,0.0229563053559853,-0.696661868948113,-0.164990696339003,-0.263591276201828,0.307862040417697,0.0687001865756038,0.24326454308948,-0.0967072201612154,-0.0923067434778192,0,-0.0881268324752877,0,-0.271795778918028,-0.679498131621524,0.0447112295268879,0.0807343323173785,0,-0.737119935945896,0,0.161255717010808,0,0.00209976487796804,-0.0342920687825214,0.752951322947378,0.144828694284638,0,-0.0454175577407211,-0.788130937773974,0,-0.641734783208894,-0.00433542193383893,0,-0.150367083334639,-0.697695966512583,-0.211650427864589,-0.0015728075761494,0,-0.790080158389657,0,0,-0.22224614085317,0.27066564492633,0,0.479914175548707,0.124365950687632,-0.237907173965772,0.250337793794588,0,0,-0.645700337992725,0,0,-0.447124534628121,-0.0176870357976068,0.0768497973537738,0.443306779825652,0,-0.108622809454255,0,0,-0.177527765965176,0.767608046190038,0.0849279019985615,0,0,-0.249881296598824,-0.0705513119151602,0,0,0,0.0481867180327694,0,-0.0589565109853561,0,0,0.212092160466118,0,0,0.350879433211436,0.0869956696375339,0,-0.180776452265071,0,0,0,0,0,0,0,0,-0.895697717507269,0.104572590481096,0.15181588252967,0,0,0,0,-0.0569198733635656,0.238592437759258,0,0.142970591708459,0,0,0,0,0.188692308416879,0,0,0.137416649103045,0.216818413697999,0.101073072136245,-0.0797926575537287,0,0,0,0.950743937148275,0,0,0,0,-0.167486893798736,0,0,-0.473126644196471,0,-0.0729693003960468,0.193251418659249,0,0.339092024791546,-0.426719079193044,-0.803478657957743,0,0,-0.261347131789888,0,0,-0.153878426088409,-0.0823702229656663,0,0,0,0,0,0,0,0,0.0605187858063349,0,0,0,0,0,0,0,0,0,0,0,-0.745124899975011,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.204409407780287,0,0,0,0,0,0,0,0,0.0347157430274766,0,0,0,0,0,0.89552854962674,0,0,0,0,0.754628740764391,0,0,-0.118558603003605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354844431544613,-0.200006601941911,0,0,0,0,0,0.506141682690719,0,0,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.114515268119704,0,0,0,0,0,0.0628441218163222,0.25307084134536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.526845795711958,-0.0247755787802223,-0.128403986783001,-0.0568589461625992,0,0,-0.232628352633041,0,0.200235078529555,0,0,0,0,0.106076225074518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102558605297957,0,0,0,0,0,0,0,0.513791075332295,0,0,0.298454680647879,0,0,0,0,0,0,0.140100000359077,-0.283220399823148,-0.104292291577665,0,0,0,-0.054385572482455,0,0,-0.191142455090553,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0.0794017645949545,0,0,0,0,0,0,0.430216826187086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0.361810531585343,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.562147511695483,0,0.366308867229522,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366308867229522,0,0,0,-0.0391199997208722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393606924614928,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,1.22877530753719,0,0,0,0,0.648996010651488,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926137007292372,0,0,0.146199710739548,0,0,0,0,0,0,0,0,0,0,0,0,0.0974833500397826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.06E+05 | ||
|rna_weight_ug=5.585 | |rna_weight_ug=5.585 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1981 | |sample_cell_catalog=RCB1981 | ||
|sample_cell_line=HD-Mar2 | |sample_cell_line=HD-Mar2 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.44960047124699e-264!GO:0043227;membrane-bound organelle;9.42861505493341e-248!GO:0043231;intracellular membrane-bound organelle;3.32816419057337e-247!GO:0043226;organelle;1.03994210261263e-230!GO:0043229;intracellular organelle;5.17400013707454e-230!GO:0044422;organelle part;1.53343935820313e-165!GO:0044446;intracellular organelle part;8.51328804678174e-164!GO:0005634;nucleus;4.11039808287303e-150!GO:0044237;cellular metabolic process;8.48764306231183e-130!GO:0005737;cytoplasm;7.43842685190319e-129!GO:0032991;macromolecular complex;7.99099499251127e-124!GO:0044238;primary metabolic process;1.37724007582281e-123!GO:0043170;macromolecule metabolic process;8.68616729739674e-122!GO:0044428;nuclear part;2.85742252700318e-109!GO:0030529;ribonucleoprotein complex;1.43678032424022e-100!GO:0003723;RNA binding;1.85324373891727e-93!GO:0044444;cytoplasmic part;1.1103995833021e-91!GO:0043233;organelle lumen;4.81334374319238e-90!GO:0031974;membrane-enclosed lumen;4.81334374319238e-90!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.58039720319263e-89!GO:0043283;biopolymer metabolic process;7.83790093772969e-89!GO:0006259;DNA metabolic process;3.03055635163649e-75!GO:0010467;gene expression;1.85374608896775e-73!GO:0006396;RNA processing;4.92570325458883e-73!GO:0005739;mitochondrion;1.46240675265973e-69!GO:0003676;nucleic acid binding;4.64909673992406e-64!GO:0043234;protein complex;8.40849028930469e-64!GO:0031981;nuclear lumen;2.40599851369392e-63!GO:0016071;mRNA metabolic process;7.79010469297958e-58!GO:0006412;translation;4.2853243096209e-54!GO:0005840;ribosome;3.64355518817401e-53!GO:0006397;mRNA processing;2.66652920276319e-49!GO:0008380;RNA splicing;1.95585661263728e-48!GO:0005515;protein binding;2.39637528185549e-48!GO:0044429;mitochondrial part;1.92865280744055e-46!GO:0007049;cell cycle;2.25532765495473e-46!GO:0003735;structural constituent of ribosome;6.32195891280008e-46!GO:0019538;protein metabolic process;6.5531939083231e-45!GO:0031967;organelle envelope;1.9650351994184e-43!GO:0031975;envelope;4.28198932474766e-43!GO:0016070;RNA metabolic process;5.93112900032709e-43!GO:0006996;organelle organization and biogenesis;5.93112900032709e-43!GO:0044267;cellular protein metabolic process;1.13404678108284e-42!GO:0005694;chromosome;3.3960027761672e-42!GO:0006974;response to DNA damage stimulus;4.18853968459478e-42!GO:0044260;cellular macromolecule metabolic process;7.50786879594962e-42!GO:0033279;ribosomal subunit;1.36736920874663e-41!GO:0044249;cellular biosynthetic process;3.39269167359436e-41!GO:0005654;nucleoplasm;9.06237864063667e-41!GO:0006281;DNA repair;3.11320319800901e-40!GO:0009059;macromolecule biosynthetic process;3.22362694583637e-39!GO:0016043;cellular component organization and biogenesis;3.54486737460238e-39!GO:0031090;organelle membrane;1.96630991190079e-38!GO:0009058;biosynthetic process;2.00166150485539e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.46727080568199e-38!GO:0022402;cell cycle process;2.96842249531072e-37!GO:0043228;non-membrane-bound organelle;3.68112742296105e-37!GO:0043232;intracellular non-membrane-bound organelle;3.68112742296105e-37!GO:0044427;chromosomal part;5.28875520911376e-37!GO:0005681;spliceosome;1.48336125148219e-35!GO:0065003;macromolecular complex assembly;9.05781983651385e-35!GO:0000278;mitotic cell cycle;1.77311281327851e-34!GO:0033036;macromolecule localization;3.1354641167165e-34!GO:0051276;chromosome organization and biogenesis;9.1839015241224e-33!GO:0000166;nucleotide binding;1.80287411184609e-32!GO:0005829;cytosol;5.66151702737528e-32!GO:0015031;protein transport;6.59306850547583e-32!GO:0022403;cell cycle phase;8.20764153331936e-32!GO:0044451;nucleoplasm part;2.83047691195973e-31!GO:0006260;DNA replication;2.17842988336338e-30!GO:0022607;cellular component assembly;2.43783218111145e-30!GO:0008104;protein localization;9.37559892184339e-30!GO:0046907;intracellular transport;1.01378430817718e-29!GO:0009719;response to endogenous stimulus;1.04800017952158e-29!GO:0045184;establishment of protein localization;4.39621867940622e-29!GO:0000087;M phase of mitotic cell cycle;5.96773065313116e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.50750841049861e-29!GO:0019866;organelle inner membrane;7.97390535249809e-29!GO:0005740;mitochondrial envelope;2.76525109551651e-28!GO:0007067;mitosis;2.76525109551651e-28!GO:0000279;M phase;6.10536632738455e-28!GO:0031966;mitochondrial membrane;3.61419214265715e-27!GO:0005743;mitochondrial inner membrane;2.51101849745231e-26!GO:0051301;cell division;4.14326405489735e-26!GO:0044445;cytosolic part;1.93810208890038e-25!GO:0016887;ATPase activity;2.14070835503746e-25!GO:0006886;intracellular protein transport;7.6187870985563e-25!GO:0042623;ATPase activity, coupled;8.52823630257148e-25!GO:0006325;establishment and/or maintenance of chromatin architecture;1.31322337749691e-24!GO:0005524;ATP binding;2.65733577750129e-24!GO:0032559;adenyl ribonucleotide binding;7.98536190626338e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.60754681168285e-24!GO:0006323;DNA packaging;8.94788406763369e-24!GO:0016462;pyrophosphatase activity;9.56514379305888e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.14151970499301e-23!GO:0017111;nucleoside-triphosphatase activity;1.64332443370952e-23!GO:0030554;adenyl nucleotide binding;3.71740204226169e-23!GO:0005730;nucleolus;6.63193949510745e-23!GO:0006119;oxidative phosphorylation;1.70674773043787e-22!GO:0044455;mitochondrial membrane part;4.44419744605751e-22!GO:0032553;ribonucleotide binding;5.85486865629491e-22!GO:0032555;purine ribonucleotide binding;5.85486865629491e-22!GO:0015935;small ribosomal subunit;8.21777754053072e-22!GO:0006512;ubiquitin cycle;1.03384075841039e-21!GO:0017076;purine nucleotide binding;1.29822169334898e-21!GO:0031980;mitochondrial lumen;1.33012039146727e-21!GO:0005759;mitochondrial matrix;1.33012039146727e-21!GO:0016874;ligase activity;3.0422965603131e-21!GO:0044265;cellular macromolecule catabolic process;5.61488737902419e-21!GO:0015934;large ribosomal subunit;6.66840752982298e-21!GO:0022618;protein-RNA complex assembly;7.34197856518032e-21!GO:0051641;cellular localization;9.40463001792741e-20!GO:0051649;establishment of cellular localization;1.01220131345391e-19!GO:0000785;chromatin;8.66314982864376e-19!GO:0004386;helicase activity;2.20120098623303e-18!GO:0043285;biopolymer catabolic process;5.18233997032247e-18!GO:0006457;protein folding;6.04162219340516e-18!GO:0042254;ribosome biogenesis and assembly;1.08878033740261e-17!GO:0005746;mitochondrial respiratory chain;1.34146148849382e-17!GO:0006261;DNA-dependent DNA replication;1.75477109171879e-17!GO:0009057;macromolecule catabolic process;2.85476410354937e-17!GO:0008135;translation factor activity, nucleic acid binding;3.35211091811084e-17!GO:0000502;proteasome complex (sensu Eukaryota);3.61548271358835e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;3.61548271358835e-17!GO:0000375;RNA splicing, via transesterification reactions;3.61548271358835e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.61548271358835e-17!GO:0016568;chromatin modification;4.44829241353914e-17!GO:0019941;modification-dependent protein catabolic process;6.54511364386064e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.54511364386064e-17!GO:0031965;nuclear membrane;7.85329726891204e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.12113539260771e-17!GO:0044453;nuclear membrane part;1.20265078069744e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.59427520157314e-16!GO:0051726;regulation of cell cycle;1.72207660371662e-16!GO:0044257;cellular protein catabolic process;2.12774472136195e-16!GO:0005761;mitochondrial ribosome;2.12774472136195e-16!GO:0000313;organellar ribosome;2.12774472136195e-16!GO:0000074;regulation of progression through cell cycle;4.00193203082835e-16!GO:0005635;nuclear envelope;6.73903238445037e-16!GO:0044248;cellular catabolic process;7.65286395769828e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.65286395769828e-16!GO:0003954;NADH dehydrogenase activity;7.65286395769828e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.65286395769828e-16!GO:0008026;ATP-dependent helicase activity;8.54240660773177e-16!GO:0043412;biopolymer modification;9.23476002784736e-16!GO:0006605;protein targeting;1.09692252203683e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17299911290598e-15!GO:0006333;chromatin assembly or disassembly;1.26141736363081e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.66305326596785e-15!GO:0065004;protein-DNA complex assembly;4.55363258504317e-15!GO:0016604;nuclear body;4.61795832094887e-15!GO:0012505;endomembrane system;4.78875539970232e-15!GO:0005643;nuclear pore;1.03218617766154e-14!GO:0006399;tRNA metabolic process;1.28703123955451e-14!GO:0000775;chromosome, pericentric region;1.29108790628597e-14!GO:0006403;RNA localization;1.44256241474177e-14!GO:0050657;nucleic acid transport;2.67515136751406e-14!GO:0051236;establishment of RNA localization;2.67515136751406e-14!GO:0050658;RNA transport;2.67515136751406e-14!GO:0043566;structure-specific DNA binding;4.5222701333865e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.86088283516716e-14!GO:0042773;ATP synthesis coupled electron transport;6.86088283516716e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.20346985620487e-14!GO:0051186;cofactor metabolic process;9.65524333168245e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.08317482222337e-13!GO:0045271;respiratory chain complex I;1.08317482222337e-13!GO:0005747;mitochondrial respiratory chain complex I;1.08317482222337e-13!GO:0008134;transcription factor binding;1.18723282291139e-13!GO:0051082;unfolded protein binding;1.38848699721073e-13!GO:0003697;single-stranded DNA binding;2.05748437892347e-13!GO:0003743;translation initiation factor activity;2.67892907118182e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.12642899886003e-13!GO:0006913;nucleocytoplasmic transport;4.43887386058281e-13!GO:0030163;protein catabolic process;6.3337088984628e-13!GO:0051169;nuclear transport;8.15178451723665e-13!GO:0046930;pore complex;1.13578258571204e-12!GO:0006464;protein modification process;1.15346242535709e-12!GO:0006413;translational initiation;1.43078446655572e-12!GO:0043687;post-translational protein modification;1.52908714138105e-12!GO:0006364;rRNA processing;1.77948167305984e-12!GO:0019222;regulation of metabolic process;2.08267885840477e-12!GO:0065002;intracellular protein transport across a membrane;3.16767503389895e-12!GO:0051028;mRNA transport;4.70833616022294e-12!GO:0016072;rRNA metabolic process;4.8791508021047e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.74498931533733e-12!GO:0009259;ribonucleotide metabolic process;5.87835367182218e-12!GO:0006310;DNA recombination;6.24926765104972e-12!GO:0016779;nucleotidyltransferase activity;7.65137866020524e-12!GO:0006732;coenzyme metabolic process;7.65137866020524e-12!GO:0016787;hydrolase activity;8.85621111616215e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.3084906974036e-11!GO:0006446;regulation of translational initiation;1.56192565198898e-11!GO:0016607;nuclear speck;1.80520812254117e-11!GO:0006163;purine nucleotide metabolic process;3.26469569272448e-11!GO:0005819;spindle;3.83992130786766e-11!GO:0006164;purine nucleotide biosynthetic process;5.36026837072188e-11!GO:0015630;microtubule cytoskeleton;5.48500539524458e-11!GO:0009260;ribonucleotide biosynthetic process;5.68977551083443e-11!GO:0003677;DNA binding;6.27432802457032e-11!GO:0005813;centrosome;6.80576345680996e-11!GO:0031323;regulation of cellular metabolic process;7.79045481745543e-11!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.16856146526554e-11!GO:0008094;DNA-dependent ATPase activity;8.40609952580781e-11!GO:0005815;microtubule organizing center;1.37512578476036e-10!GO:0050794;regulation of cellular process;1.61857533412504e-10!GO:0000075;cell cycle checkpoint;1.97947216590242e-10!GO:0006302;double-strand break repair;2.57161301855108e-10!GO:0031497;chromatin assembly;3.50523199292337e-10!GO:0009150;purine ribonucleotide metabolic process;3.74559284294894e-10!GO:0005657;replication fork;4.07041535229113e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.2987234867269e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.2987234867269e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.2987234867269e-10!GO:0006350;transcription;4.64904745101546e-10!GO:0009152;purine ribonucleotide biosynthetic process;6.11152518263717e-10!GO:0008639;small protein conjugating enzyme activity;6.41683835307197e-10!GO:0006334;nucleosome assembly;6.97526111655623e-10!GO:0017038;protein import;8.92985271483397e-10!GO:0048770;pigment granule;9.40037494705231e-10!GO:0042470;melanosome;9.40037494705231e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.01922193754463e-09!GO:0005839;proteasome core complex (sensu Eukaryota);1.21540229218652e-09!GO:0004842;ubiquitin-protein ligase activity;1.2620228357326e-09!GO:0004298;threonine endopeptidase activity;1.35368301583602e-09!GO:0019829;cation-transporting ATPase activity;1.46478443252153e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.77652116262606e-09!GO:0044432;endoplasmic reticulum part;1.77716620754888e-09!GO:0043038;amino acid activation;1.85304505063504e-09!GO:0006418;tRNA aminoacylation for protein translation;1.85304505063504e-09!GO:0043039;tRNA aminoacylation;1.85304505063504e-09!GO:0019787;small conjugating protein ligase activity;2.22658272903608e-09!GO:0009055;electron carrier activity;2.49094741701579e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.89275331808642e-09!GO:0051325;interphase;2.89275331808642e-09!GO:0051188;cofactor biosynthetic process;3.20068117795199e-09!GO:0051329;interphase of mitotic cell cycle;4.71892013744534e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.41980339923438e-09!GO:0003712;transcription cofactor activity;6.52177056555604e-09!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.31633738306744e-09!GO:0048193;Golgi vesicle transport;1.02958347044299e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.17755697073358e-08!GO:0009056;catabolic process;1.46063692854961e-08!GO:0003899;DNA-directed RNA polymerase activity;1.84414499681986e-08!GO:0004518;nuclease activity;1.87501859112513e-08!GO:0007051;spindle organization and biogenesis;2.10606713417252e-08!GO:0010468;regulation of gene expression;2.27265705574818e-08!GO:0016881;acid-amino acid ligase activity;2.72218723846912e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.76026275216552e-08!GO:0051052;regulation of DNA metabolic process;2.90871427796029e-08!GO:0003682;chromatin binding;3.88543305816258e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.19124511105194e-08!GO:0016741;transferase activity, transferring one-carbon groups;4.59738834053254e-08!GO:0009060;aerobic respiration;4.74234727581207e-08!GO:0005667;transcription factor complex;5.09252196222923e-08!GO:0015986;ATP synthesis coupled proton transport;5.64780048146619e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.64780048146619e-08!GO:0008565;protein transporter activity;5.64780048146619e-08!GO:0008168;methyltransferase activity;5.90284324875209e-08!GO:0003690;double-stranded DNA binding;5.90284324875209e-08!GO:0000245;spliceosome assembly;6.07264729657145e-08!GO:0016740;transferase activity;7.41315222117259e-08!GO:0003684;damaged DNA binding;7.67743204792177e-08!GO:0032446;protein modification by small protein conjugation;7.81477028078456e-08!GO:0032774;RNA biosynthetic process;9.82263096531328e-08!GO:0005789;endoplasmic reticulum membrane;9.82263096531328e-08!GO:0007005;mitochondrion organization and biogenesis;1.14874050652166e-07!GO:0012501;programmed cell death;1.15885192355421e-07!GO:0005783;endoplasmic reticulum;1.19952344269707e-07!GO:0016363;nuclear matrix;1.22970533169749e-07!GO:0006366;transcription from RNA polymerase II promoter;1.34585886898646e-07!GO:0009117;nucleotide metabolic process;1.35725291566261e-07!GO:0009108;coenzyme biosynthetic process;1.49969710364887e-07!GO:0006915;apoptosis;1.50703329077916e-07!GO:0006351;transcription, DNA-dependent;1.53552544684255e-07!GO:0009141;nucleoside triphosphate metabolic process;1.61062596342905e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.78174028055816e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.78174028055816e-07!GO:0006752;group transfer coenzyme metabolic process;1.78174028055816e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.87571930953273e-07!GO:0016567;protein ubiquitination;2.20870943458175e-07!GO:0045333;cellular respiration;2.46981919119118e-07!GO:0006754;ATP biosynthetic process;2.65430959364746e-07!GO:0006753;nucleoside phosphate metabolic process;2.65430959364746e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.7115112646989e-07!GO:0015399;primary active transmembrane transporter activity;3.7115112646989e-07!GO:0051168;nuclear export;4.15682107597547e-07!GO:0046034;ATP metabolic process;4.25109631974674e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.50335740842492e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.50335740842492e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.50335740842492e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.50335740842492e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.10411418972535e-07!GO:0045259;proton-transporting ATP synthase complex;5.16563124563293e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.45881207763126e-07!GO:0019899;enzyme binding;5.61167136680388e-07!GO:0000151;ubiquitin ligase complex;6.30100756712025e-07!GO:0006793;phosphorus metabolic process;6.30100756712025e-07!GO:0006796;phosphate metabolic process;6.30100756712025e-07!GO:0006099;tricarboxylic acid cycle;7.28166891549283e-07!GO:0046356;acetyl-CoA catabolic process;7.28166891549283e-07!GO:0008219;cell death;7.3915376012325e-07!GO:0016265;death;7.3915376012325e-07!GO:0003724;RNA helicase activity;7.92059795931411e-07!GO:0006084;acetyl-CoA metabolic process;8.36240788123848e-07!GO:0004527;exonuclease activity;8.81236825465865e-07!GO:0003678;DNA helicase activity;1.01288844623931e-06!GO:0007088;regulation of mitosis;1.01293460356808e-06!GO:0050789;regulation of biological process;1.03272908598212e-06!GO:0006461;protein complex assembly;1.04255927173325e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.0634741787414e-06!GO:0007059;chromosome segregation;1.09439800551487e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.29994422170054e-06!GO:0045449;regulation of transcription;1.6534916254285e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.83586255681751e-06!GO:0008033;tRNA processing;2.08944570958936e-06!GO:0016310;phosphorylation;2.24304655684427e-06!GO:0005762;mitochondrial large ribosomal subunit;2.55289611331335e-06!GO:0000315;organellar large ribosomal subunit;2.55289611331335e-06!GO:0006401;RNA catabolic process;2.76238678148566e-06!GO:0003713;transcription coactivator activity;2.88256664995711e-06!GO:0000786;nucleosome;5.12883770248026e-06!GO:0009109;coenzyme catabolic process;5.38328737773317e-06!GO:0006352;transcription initiation;5.69710270443393e-06!GO:0043492;ATPase activity, coupled to movement of substances;5.91849608223028e-06!GO:0007093;mitotic cell cycle checkpoint;6.35845623360522e-06!GO:0000776;kinetochore;6.60372815390893e-06!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.82855301401864e-06!GO:0000228;nuclear chromosome;7.26053916694221e-06!GO:0006606;protein import into nucleus;8.14952412778153e-06!GO:0006402;mRNA catabolic process;8.21855402901301e-06!GO:0009165;nucleotide biosynthetic process;8.35738262541717e-06!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;9.57257331846728e-06!GO:0051170;nuclear import;9.90558429488983e-06!GO:0043623;cellular protein complex assembly;1.43730261383266e-05!GO:0003729;mRNA binding;1.67273842611795e-05!GO:0045786;negative regulation of progression through cell cycle;1.67754402076562e-05!GO:0016563;transcription activator activity;1.75365893397277e-05!GO:0051427;hormone receptor binding;1.82859545236615e-05!GO:0006270;DNA replication initiation;2.06405378500177e-05!GO:0016564;transcription repressor activity;2.15934711999194e-05!GO:0006355;regulation of transcription, DNA-dependent;2.36819544892115e-05!GO:0032508;DNA duplex unwinding;2.43534250546348e-05!GO:0032392;DNA geometric change;2.43534250546348e-05!GO:0000314;organellar small ribosomal subunit;2.58076271700522e-05!GO:0005763;mitochondrial small ribosomal subunit;2.58076271700522e-05!GO:0006284;base-excision repair;2.73027398209919e-05!GO:0006383;transcription from RNA polymerase III promoter;2.9317003609108e-05!GO:0008186;RNA-dependent ATPase activity;2.96929190519709e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.23390232645679e-05!GO:0006888;ER to Golgi vesicle-mediated transport;3.28020700375445e-05!GO:0006268;DNA unwinding during replication;3.82311224176571e-05!GO:0006613;cotranslational protein targeting to membrane;4.01717711588573e-05!GO:0035257;nuclear hormone receptor binding;4.14326247720531e-05!GO:0006275;regulation of DNA replication;4.37750351248969e-05!GO:0031324;negative regulation of cellular metabolic process;5.47771827295387e-05!GO:0051187;cofactor catabolic process;5.62835806230422e-05!GO:0005794;Golgi apparatus;6.06583091281891e-05!GO:0003887;DNA-directed DNA polymerase activity;6.17872508868697e-05!GO:0016192;vesicle-mediated transport;6.35070968335806e-05!GO:0006289;nucleotide-excision repair;6.98222166720507e-05!GO:0042981;regulation of apoptosis;7.32969273496989e-05!GO:0044452;nucleolar part;8.28877294625463e-05!GO:0006612;protein targeting to membrane;8.53171753708563e-05!GO:0043021;ribonucleoprotein binding;8.64316684633464e-05!GO:0043067;regulation of programmed cell death;9.05671247918336e-05!GO:0065009;regulation of a molecular function;9.24001865266141e-05!GO:0032259;methylation;9.33479853116459e-05!GO:0000819;sister chromatid segregation;9.60676959350746e-05!GO:0043681;protein import into mitochondrion;9.93102025771568e-05!GO:0004004;ATP-dependent RNA helicase activity;9.98685281661458e-05!GO:0000725;recombinational repair;0.00010648909684476!GO:0000724;double-strand break repair via homologous recombination;0.00010648909684476!GO:0000070;mitotic sister chromatid segregation;0.000109888644024365!GO:0051246;regulation of protein metabolic process;0.000110886006235593!GO:0030880;RNA polymerase complex;0.000111590316614759!GO:0031570;DNA integrity checkpoint;0.000111590316614759!GO:0005793;ER-Golgi intermediate compartment;0.000112266266744972!GO:0016853;isomerase activity;0.000112817748939175!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000113355720618574!GO:0006414;translational elongation;0.000137239118801096!GO:0032200;telomere organization and biogenesis;0.000140233095714559!GO:0000723;telomere maintenance;0.000140233095714559!GO:0007052;mitotic spindle organization and biogenesis;0.000153688928815391!GO:0044450;microtubule organizing center part;0.000153872273700396!GO:0043596;nuclear replication fork;0.000170241223869733!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000186371518527184!GO:0006338;chromatin remodeling;0.000189276282956236!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.000190389320281122!GO:0006405;RNA export from nucleus;0.000199820489395178!GO:0051053;negative regulation of DNA metabolic process;0.000202130926629204!GO:0006626;protein targeting to mitochondrion;0.000247126647302717!GO:0006818;hydrogen transport;0.000247126647302717!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000255870854428915!GO:0005684;U2-dependent spliceosome;0.000259520950773852!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000259520950773852!GO:0042393;histone binding;0.000259520950773852!GO:0008408;3'-5' exonuclease activity;0.000262403670718865!GO:0043414;biopolymer methylation;0.000272681601845333!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000280906800236387!GO:0000428;DNA-directed RNA polymerase complex;0.000280906800236387!GO:0051539;4 iron, 4 sulfur cluster binding;0.000283529359008743!GO:0045454;cell redox homeostasis;0.000292358021586297!GO:0000922;spindle pole;0.000303547168104326!GO:0008276;protein methyltransferase activity;0.000327674865178678!GO:0048523;negative regulation of cellular process;0.000331503482233105!GO:0006091;generation of precursor metabolites and energy;0.000336668645352657!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000338384873697491!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000340268468584243!GO:0048475;coated membrane;0.000341932166424593!GO:0030117;membrane coat;0.000341932166424593!GO:0015992;proton transport;0.000342755838308999!GO:0016251;general RNA polymerase II transcription factor activity;0.000364072464432132!GO:0005876;spindle microtubule;0.000401299782081404!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000401299782081404!GO:0006839;mitochondrial transport;0.000415595828082614!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000500555961342626!GO:0009124;nucleoside monophosphate biosynthetic process;0.000506666000810889!GO:0009123;nucleoside monophosphate metabolic process;0.000506666000810889!GO:0031124;mRNA 3'-end processing;0.000512289882691337!GO:0015631;tubulin binding;0.00052079140942394!GO:0022890;inorganic cation transmembrane transporter activity;0.000556914425232001!GO:0009892;negative regulation of metabolic process;0.000600069114009976!GO:0000049;tRNA binding;0.000606441729266133!GO:0006611;protein export from nucleus;0.000610510772518651!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000617026644732633!GO:0051540;metal cluster binding;0.000619787190875612!GO:0051536;iron-sulfur cluster binding;0.000619787190875612!GO:0030120;vesicle coat;0.000641996776828255!GO:0030662;coated vesicle membrane;0.000641996776828255!GO:0009112;nucleobase metabolic process;0.000650489292089014!GO:0007006;mitochondrial membrane organization and biogenesis;0.000668218486243947!GO:0000077;DNA damage checkpoint;0.000695353794686915!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000717585853659622!GO:0046489;phosphoinositide biosynthetic process;0.000731567898145233!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000731567898145233!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000731567898145233!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000731567898145233!GO:0000059;protein import into nucleus, docking;0.000761819477973847!GO:0008270;zinc ion binding;0.000767058436225724!GO:0043601;nuclear replisome;0.000768423293631661!GO:0030894;replisome;0.000768423293631661!GO:0004532;exoribonuclease activity;0.000768423293631661!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.000768423293631661!GO:0008654;phospholipid biosynthetic process;0.000785540794010914!GO:0044454;nuclear chromosome part;0.000859604625519351!GO:0004003;ATP-dependent DNA helicase activity;0.000875840548927933!GO:0003711;transcription elongation regulator activity;0.000925895329803654!GO:0007017;microtubule-based process;0.000936855369217566!GO:0051320;S phase;0.000937279733166977!GO:0000118;histone deacetylase complex;0.000937629072886755!GO:0004674;protein serine/threonine kinase activity;0.000938910346030434!GO:0030521;androgen receptor signaling pathway;0.000964556962574094!GO:0051252;regulation of RNA metabolic process;0.000993812157028239!GO:0016859;cis-trans isomerase activity;0.0010028534547727!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00104734789109376!GO:0051920;peroxiredoxin activity;0.00106041692421498!GO:0016272;prefoldin complex;0.00108902720527227!GO:0019900;kinase binding;0.00111795683306313!GO:0031123;RNA 3'-end processing;0.00112152992300156!GO:0000178;exosome (RNase complex);0.00116240106417291!GO:0000726;non-recombinational repair;0.00118918822963219!GO:0046474;glycerophospholipid biosynthetic process;0.00121814913899356!GO:0019843;rRNA binding;0.00122808638437482!GO:0000792;heterochromatin;0.00123290089022176!GO:0000781;chromosome, telomeric region;0.00124523645700829!GO:0008156;negative regulation of DNA replication;0.00125566054771646!GO:0040029;regulation of gene expression, epigenetic;0.00131244378955685!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00136466877887071!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00136466877887071!GO:0005885;Arp2/3 protein complex;0.00143892282893567!GO:0009161;ribonucleoside monophosphate metabolic process;0.00145479281775619!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00145479281775619!GO:0000287;magnesium ion binding;0.00158103103926996!GO:0005637;nuclear inner membrane;0.00159280670404144!GO:0030384;phosphoinositide metabolic process;0.00170669776182626!GO:0006650;glycerophospholipid metabolic process;0.00170688857247547!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00176796168528286!GO:0015002;heme-copper terminal oxidase activity;0.00176796168528286!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00176796168528286!GO:0004129;cytochrome-c oxidase activity;0.00176796168528286!GO:0007004;telomere maintenance via telomerase;0.00183929455132863!GO:0003725;double-stranded RNA binding;0.00213938459292083!GO:0003714;transcription corepressor activity;0.00216361752392534!GO:0048519;negative regulation of biological process;0.00222566908815772!GO:0008632;apoptotic program;0.00233616900681152!GO:0000910;cytokinesis;0.00255709392379099!GO:0065007;biological regulation;0.00260502174107368!GO:0007346;regulation of progression through mitotic cell cycle;0.00263599807497844!GO:0008139;nuclear localization sequence binding;0.00265687102997707!GO:0051087;chaperone binding;0.00268291633361437!GO:0019901;protein kinase binding;0.00276193758024577!GO:0008022;protein C-terminus binding;0.00277157999775306!GO:0005048;signal sequence binding;0.00282941862897411!GO:0005669;transcription factor TFIID complex;0.00296635124235427!GO:0006950;response to stress;0.00307978265566768!GO:0006144;purine base metabolic process;0.00309512023652426!GO:0009451;RNA modification;0.00312809176649703!GO:0000082;G1/S transition of mitotic cell cycle;0.00325834651783886!GO:0006595;polyamine metabolic process;0.00331998275414977!GO:0005768;endosome;0.00342287187719526!GO:0005874;microtubule;0.00345468611907486!GO:0016481;negative regulation of transcription;0.00361630216280291!GO:0050790;regulation of catalytic activity;0.00381676091349417!GO:0005663;DNA replication factor C complex;0.00389491222931882!GO:0042802;identical protein binding;0.00397136023178437!GO:0030518;steroid hormone receptor signaling pathway;0.00399665497700314!GO:0006916;anti-apoptosis;0.00403651814847198!GO:0043069;negative regulation of programmed cell death;0.00407627466163955!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00425051469839096!GO:0006730;one-carbon compound metabolic process;0.00427076564587218!GO:0035258;steroid hormone receptor binding;0.00433343388773327!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00443217882463492!GO:0019867;outer membrane;0.00451835691949808!GO:0046914;transition metal ion binding;0.00454048717340259!GO:0006378;mRNA polyadenylation;0.00464893887548206!GO:0006891;intra-Golgi vesicle-mediated transport;0.00470539572497638!GO:0004536;deoxyribonuclease activity;0.00472970008040109!GO:0016569;covalent chromatin modification;0.00485386684330328!GO:0046483;heterocycle metabolic process;0.00485479964132941!GO:0008017;microtubule binding;0.00499847801526431!GO:0043066;negative regulation of apoptosis;0.00508192427294111!GO:0042770;DNA damage response, signal transduction;0.00512624585828452!GO:0008312;7S RNA binding;0.00515664153734308!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00519653572652125!GO:0043488;regulation of mRNA stability;0.00519706769408312!GO:0043487;regulation of RNA stability;0.00519706769408312!GO:0031072;heat shock protein binding;0.00520036580206277!GO:0031968;organelle outer membrane;0.00528580990878307!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.00534997208521606!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.00534997208521606!GO:0009126;purine nucleoside monophosphate metabolic process;0.00534997208521606!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.00534997208521606!GO:0051297;centrosome organization and biogenesis;0.00542416318683733!GO:0031023;microtubule organizing center organization and biogenesis;0.00542416318683733!GO:0016491;oxidoreductase activity;0.00568802138532302!GO:0031577;spindle checkpoint;0.00593835358185453!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00597363982622018!GO:0006007;glucose catabolic process;0.00607254033217241!GO:0051789;response to protein stimulus;0.00610265748262339!GO:0006986;response to unfolded protein;0.00610265748262339!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0062930956559529!GO:0046966;thyroid hormone receptor binding;0.00655576968835789!GO:0000018;regulation of DNA recombination;0.00675947448438897!GO:0048500;signal recognition particle;0.00682424298293834!GO:0000175;3'-5'-exoribonuclease activity;0.00685844264449573!GO:0015980;energy derivation by oxidation of organic compounds;0.006918767101015!GO:0046112;nucleobase biosynthetic process;0.006918767101015!GO:0016584;nucleosome positioning;0.00692107202271097!GO:0004520;endodeoxyribonuclease activity;0.00696719927499958!GO:0000152;nuclear ubiquitin ligase complex;0.00719301934188577!GO:0006505;GPI anchor metabolic process;0.00747252212449171!GO:0043022;ribosome binding;0.00767231689205562!GO:0000930;gamma-tubulin complex;0.00812322909264753!GO:0005798;Golgi-associated vesicle;0.00825878149383784!GO:0005658;alpha DNA polymerase:primase complex;0.00829033885042167!GO:0006506;GPI anchor biosynthetic process;0.00861965509602182!GO:0042054;histone methyltransferase activity;0.00866538991229631!GO:0016197;endosome transport;0.00886332715432814!GO:0000793;condensed chromosome;0.00897123729453635!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00922577078927439!GO:0016788;hydrolase activity, acting on ester bonds;0.00931367747131502!GO:0043284;biopolymer biosynthetic process;0.00931628480654011!GO:0004540;ribonuclease activity;0.00933285847193949!GO:0030522;intracellular receptor-mediated signaling pathway;0.00945375216064333!GO:0032404;mismatch repair complex binding;0.00956141713295287!GO:0006497;protein amino acid lipidation;0.00978750519304439!GO:0006303;double-strand break repair via nonhomologous end joining;0.0101147748322567!GO:0046982;protein heterodimerization activity;0.0101455652882764!GO:0033261;regulation of progression through S phase;0.0102443823602315!GO:0000084;S phase of mitotic cell cycle;0.0108009482811833!GO:0004519;endonuclease activity;0.010813203939792!GO:0006417;regulation of translation;0.0109652925582822!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0109796176035137!GO:0045047;protein targeting to ER;0.0109796176035137!GO:0051318;G1 phase;0.0110715122822761!GO:0005741;mitochondrial outer membrane;0.0111219253733789!GO:0031647;regulation of protein stability;0.0113880939352695!GO:0006304;DNA modification;0.0121007422775252!GO:0005788;endoplasmic reticulum lumen;0.0123644224831464!GO:0048471;perinuclear region of cytoplasm;0.012397693276714!GO:0005832;chaperonin-containing T-complex;0.0125290753716273!GO:0004523;ribonuclease H activity;0.0126968759531057!GO:0000731;DNA synthesis during DNA repair;0.0127127840364932!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0129111548214102!GO:0006695;cholesterol biosynthetic process;0.0129411217852399!GO:0006278;RNA-dependent DNA replication;0.0129783985906322!GO:0047485;protein N-terminus binding;0.0130109580080564!GO:0006376;mRNA splice site selection;0.013088130514729!GO:0000389;nuclear mRNA 3'-splice site recognition;0.013088130514729!GO:0016279;protein-lysine N-methyltransferase activity;0.0130987427239641!GO:0018024;histone-lysine N-methyltransferase activity;0.0130987427239641!GO:0016278;lysine N-methyltransferase activity;0.0130987427239641!GO:0005652;nuclear lamina;0.0136764772890528!GO:0032039;integrator complex;0.0139276538265331!GO:0001824;blastocyst development;0.0139650154206112!GO:0000123;histone acetyltransferase complex;0.0139796105422424!GO:0004576;oligosaccharyl transferase activity;0.0140640058393023!GO:0006406;mRNA export from nucleus;0.014403103484186!GO:0006266;DNA ligation;0.0144129772392826!GO:0000209;protein polyubiquitination;0.0146580826071778!GO:0003746;translation elongation factor activity;0.0148732662358605!GO:0033170;DNA-protein loading ATPase activity;0.0150388060358598!GO:0003689;DNA clamp loader activity;0.0150388060358598!GO:0000790;nuclear chromatin;0.0156543100581017!GO:0043189;H4/H2A histone acetyltransferase complex;0.0156543100581017!GO:0006301;postreplication repair;0.0157502571859936!GO:0007098;centrosome cycle;0.0157739288661171!GO:0008213;protein amino acid alkylation;0.0157739288661171!GO:0006479;protein amino acid methylation;0.0157739288661171!GO:0031970;organelle envelope lumen;0.0157814511300422!GO:0016407;acetyltransferase activity;0.0158209576557947!GO:0001832;blastocyst growth;0.0159651481012641!GO:0005869;dynactin complex;0.0160031463693353!GO:0008536;Ran GTPase binding;0.0162318458225513!GO:0031326;regulation of cellular biosynthetic process;0.0162548932798085!GO:0050662;coenzyme binding;0.0162548932798085!GO:0016126;sterol biosynthetic process;0.0165153892286217!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0165901402809786!GO:0000080;G1 phase of mitotic cell cycle;0.0167308791530657!GO:0042809;vitamin D receptor binding;0.0170741692694783!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0172031652994698!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0172685835092731!GO:0033558;protein deacetylase activity;0.0174305100124731!GO:0005769;early endosome;0.0180403355071412!GO:0007021;tubulin folding;0.0181709171808116!GO:0043631;RNA polyadenylation;0.0182089607855396!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0185374311829232!GO:0033673;negative regulation of kinase activity;0.0185602772000652!GO:0006469;negative regulation of protein kinase activity;0.0185602772000652!GO:0016570;histone modification;0.018714321675529!GO:0000096;sulfur amino acid metabolic process;0.018714321675529!GO:0006096;glycolysis;0.0187390680515753!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0188633830061513!GO:0010257;NADH dehydrogenase complex assembly;0.0188633830061513!GO:0033108;mitochondrial respiratory chain complex assembly;0.0188633830061513!GO:0000339;RNA cap binding;0.0191275245002553!GO:0009116;nucleoside metabolic process;0.0192605636769915!GO:0030663;COPI coated vesicle membrane;0.0193410832502678!GO:0030126;COPI vesicle coat;0.0193410832502678!GO:0046365;monosaccharide catabolic process;0.0196753313333662!GO:0006520;amino acid metabolic process;0.0196970837526857!GO:0005758;mitochondrial intermembrane space;0.0197568770981939!GO:0051348;negative regulation of transferase activity;0.0202284352035142!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.020427531406832!GO:0019104;DNA N-glycosylase activity;0.0207167784755579!GO:0019213;deacetylase activity;0.02174271308868!GO:0044431;Golgi apparatus part;0.0217615533197575!GO:0030176;integral to endoplasmic reticulum membrane;0.0219026345917594!GO:0004407;histone deacetylase activity;0.0219251383538818!GO:0005770;late endosome;0.0220387725770693!GO:0048487;beta-tubulin binding;0.0223317471010532!GO:0008143;poly(A) binding;0.0229527452961519!GO:0042158;lipoprotein biosynthetic process;0.0235899776205986!GO:0044262;cellular carbohydrate metabolic process;0.0242801505823394!GO:0005680;anaphase-promoting complex;0.0243386024679609!GO:0046426;negative regulation of JAK-STAT cascade;0.024740617361109!GO:0007050;cell cycle arrest;0.0248016965686783!GO:0045815;positive regulation of gene expression, epigenetic;0.0252350935650538!GO:0006400;tRNA modification;0.0252666603611149!GO:0050852;T cell receptor signaling pathway;0.0253723287053499!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0253842117199231!GO:0006607;NLS-bearing substrate import into nucleus;0.0262764207853225!GO:0042769;DNA damage response, detection of DNA damage;0.0263942815226429!GO:0008637;apoptotic mitochondrial changes;0.0267087320167787!GO:0022411;cellular component disassembly;0.0268081130566211!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0269780924314193!GO:0035267;NuA4 histone acetyltransferase complex;0.0272971650598028!GO:0008538;proteasome activator activity;0.0273823565604242!GO:0005487;nucleocytoplasmic transporter activity;0.0274507732034952!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0277633651586691!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0284509434088287!GO:0045039;protein import into mitochondrial inner membrane;0.0284509434088287!GO:0045947;negative regulation of translational initiation;0.0287949822953068!GO:0046983;protein dimerization activity;0.0291534144065977!GO:0022415;viral reproductive process;0.0291534144065977!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0295397483322155!GO:0050681;androgen receptor binding;0.0295397483322155!GO:0008250;oligosaccharyl transferase complex;0.0304050255471196!GO:0046164;alcohol catabolic process;0.0304642788564335!GO:0008299;isoprenoid biosynthetic process;0.0306341869082779!GO:0016790;thiolester hydrolase activity;0.0310911809477902!GO:0019752;carboxylic acid metabolic process;0.0316531861737178!GO:0006220;pyrimidine nucleotide metabolic process;0.0316845887259198!GO:0043624;cellular protein complex disassembly;0.0317491114042094!GO:0042608;T cell receptor binding;0.0322327500157634!GO:0019320;hexose catabolic process;0.0323184095340175!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0325107638905445!GO:0043626;PCNA complex;0.0325107638905445!GO:0030337;DNA polymerase processivity factor activity;0.0325107638905445!GO:0016585;chromatin remodeling complex;0.03266440475135!GO:0019783;small conjugating protein-specific protease activity;0.0327886304872902!GO:0006740;NADPH regeneration;0.0332072002134152!GO:0006098;pentose-phosphate shunt;0.0332072002134152!GO:0005521;lamin binding;0.033410403242558!GO:0008170;N-methyltransferase activity;0.0335233178341206!GO:0032405;MutLalpha complex binding;0.0335233178341206!GO:0007040;lysosome organization and biogenesis;0.0338108196535495!GO:0009396;folic acid and derivative biosynthetic process;0.0340608950390563!GO:0008180;signalosome;0.0344617557865193!GO:0007034;vacuolar transport;0.0353041916932731!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0353041916932731!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0353041916932731!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0353041916932731!GO:0009889;regulation of biosynthetic process;0.0353554035277912!GO:0004843;ubiquitin-specific protease activity;0.03571580865379!GO:0051338;regulation of transferase activity;0.0357862313072017!GO:0009303;rRNA transcription;0.0359097282023523!GO:0033116;ER-Golgi intermediate compartment membrane;0.0359473590379883!GO:0051235;maintenance of localization;0.0372022778779433!GO:0006415;translational termination;0.0372144412134844!GO:0016180;snRNA processing;0.0372677680272602!GO:0016073;snRNA metabolic process;0.0372677680272602!GO:0003727;single-stranded RNA binding;0.0372841530832593!GO:0030137;COPI-coated vesicle;0.0373854253104497!GO:0000097;sulfur amino acid biosynthetic process;0.0378012905564625!GO:0006779;porphyrin biosynthetic process;0.0387401291403127!GO:0033014;tetrapyrrole biosynthetic process;0.0387401291403127!GO:0005689;U12-dependent spliceosome;0.0391040166131116!GO:0008234;cysteine-type peptidase activity;0.0393982565072969!GO:0030174;regulation of DNA replication initiation;0.0404900203398051!GO:0032984;macromolecular complex disassembly;0.0412300177123294!GO:0008409;5'-3' exonuclease activity;0.0413977335756605!GO:0043549;regulation of kinase activity;0.041442030024013!GO:0044438;microbody part;0.0414640935971312!GO:0044439;peroxisomal part;0.0414640935971312!GO:0005092;GDP-dissociation inhibitor activity;0.0416109905904586!GO:0050178;phenylpyruvate tautomerase activity;0.0418144184368576!GO:0006596;polyamine biosynthetic process;0.0418144184368576!GO:0051287;NAD binding;0.0427154716518132!GO:0005784;translocon complex;0.0434066059044324!GO:0019079;viral genome replication;0.0437109915838556!GO:0051881;regulation of mitochondrial membrane potential;0.0438511047944496!GO:0001833;inner cell mass cell proliferation;0.0444205489724018!GO:0005666;DNA-directed RNA polymerase III complex;0.0444625963535464!GO:0000119;mediator complex;0.0445232013925261!GO:0030503;regulation of cell redox homeostasis;0.0447545944709242!GO:0005996;monosaccharide metabolic process;0.044914546230304!GO:0006298;mismatch repair;0.044914546230304!GO:0045005;maintenance of fidelity during DNA-dependent DNA replication;0.044914546230304!GO:0019238;cyclohydrolase activity;0.0450339437880798!GO:0005732;small nucleolar ribonucleoprotein complex;0.0456510531306509!GO:0000303;response to superoxide;0.0458027490870711!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0458027490870711!GO:0042101;T cell receptor complex;0.0466392477177106!GO:0030867;rough endoplasmic reticulum membrane;0.0472486138527805!GO:0005686;snRNP U2;0.0472486138527805!GO:0031628;opioid receptor binding;0.0472980004317253!GO:0031852;mu-type opioid receptor binding;0.0472980004317253!GO:0004448;isocitrate dehydrogenase activity;0.047495236427203!GO:0030508;thiol-disulfide exchange intermediate activity;0.0476625621215226!GO:0016799;hydrolase activity, hydrolyzing N-glycosyl compounds;0.0476829777308869!GO:0008320;protein transmembrane transporter activity;0.0478163122219282!GO:0031901;early endosome membrane;0.0481878573949722!GO:0044440;endosomal part;0.0483830572054458!GO:0010008;endosome membrane;0.0483830572054458!GO:0007020;microtubule nucleation;0.0486808458827618!GO:0006082;organic acid metabolic process;0.0487756184879447!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0487756184879447!GO:0030261;chromosome condensation;0.0487756184879447!GO:0015036;disulfide oxidoreductase activity;0.048936311576425!GO:0019318;hexose metabolic process;0.0495791705247338 | |||
|sample_id=10435 | |sample_id=10435 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912 | |top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10435-106E3;search_select_hide=table117:FF:10435-106E3 | |||
}} | }} | ||
Latest revision as of 14:01, 3 June 2020
| Name: | Hodgkin's lymphoma cell line:HD-Mar2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11715 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11715
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11715
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.214 |
| 10 | 10 | 0.0442 |
| 100 | 100 | 0.289 |
| 101 | 101 | 0.337 |
| 102 | 102 | 0.526 |
| 103 | 103 | 0.626 |
| 104 | 104 | 0.673 |
| 105 | 105 | 0.667 |
| 106 | 106 | 0.0711 |
| 107 | 107 | 0.029 |
| 108 | 108 | 0.22 |
| 109 | 109 | 0.545 |
| 11 | 11 | 0.431 |
| 110 | 110 | 0.839 |
| 111 | 111 | 0.33 |
| 112 | 112 | 0.372 |
| 113 | 113 | 0.54 |
| 114 | 114 | 0.465 |
| 115 | 115 | 0.881 |
| 116 | 116 | 0.688 |
| 117 | 117 | 0.0578 |
| 118 | 118 | 0.91 |
| 119 | 119 | 0.352 |
| 12 | 12 | 0.542 |
| 120 | 120 | 0.841 |
| 121 | 121 | 0.811 |
| 122 | 122 | 0.848 |
| 123 | 123 | 0.00206 |
| 124 | 124 | 0.0558 |
| 125 | 125 | 0.255 |
| 126 | 126 | 0.855 |
| 127 | 127 | 0.492 |
| 128 | 128 | 0.037 |
| 129 | 129 | 0.775 |
| 13 | 13 | 0.246 |
| 130 | 130 | 0.159 |
| 131 | 131 | 0.887 |
| 132 | 132 | 0.51 |
| 133 | 133 | 0.589 |
| 134 | 134 | 0.369 |
| 135 | 135 | 0.42 |
| 136 | 136 | 0.587 |
| 137 | 137 | 0.632 |
| 138 | 138 | 0.854 |
| 139 | 139 | 0.686 |
| 14 | 14 | 0.894 |
| 140 | 140 | 0.719 |
| 141 | 141 | 0.61 |
| 142 | 142 | 0.863 |
| 143 | 143 | 0.135 |
| 144 | 144 | 0.907 |
| 145 | 145 | 0.766 |
| 146 | 146 | 0.628 |
| 147 | 147 | 0.147 |
| 148 | 148 | 0.827 |
| 149 | 149 | 0.0579 |
| 15 | 15 | 0.516 |
| 150 | 150 | 0.993 |
| 151 | 151 | 0.399 |
| 152 | 152 | 0.00738 |
| 153 | 153 | 0.841 |
| 154 | 154 | 1 |
| 155 | 155 | 0.152 |
| 156 | 156 | 0.695 |
| 157 | 157 | 0.173 |
| 158 | 158 | 0.821 |
| 159 | 159 | 0.123 |
| 16 | 16 | 0.359 |
| 160 | 160 | 0.848 |
| 161 | 161 | 0.32 |
| 162 | 162 | 0.644 |
| 163 | 163 | 0.315 |
| 164 | 164 | 0.682 |
| 165 | 165 | 0.899 |
| 166 | 166 | 0.439 |
| 167 | 167 | 0.0508 |
| 168 | 168 | 0.0922 |
| 169 | 169 | 0.0949 |
| 17 | 17 | 0.243 |
| 18 | 18 | 0.44 |
| 19 | 19 | 0.0831 |
| 2 | 2 | 0.187 |
| 20 | 20 | 0.476 |
| 21 | 21 | 0.256 |
| 22 | 22 | 0.219 |
| 23 | 23 | 0.00843 |
| 24 | 24 | 0.954 |
| 25 | 25 | 0.205 |
| 26 | 26 | 0.242 |
| 27 | 27 | 0.894 |
| 28 | 28 | 0.558 |
| 29 | 29 | 0.0772 |
| 3 | 3 | 0.608 |
| 30 | 30 | 0.0825 |
| 31 | 31 | 0.378 |
| 32 | 32 | 0.0396 |
| 33 | 33 | 0.977 |
| 34 | 34 | 0.188 |
| 35 | 35 | 0.0942 |
| 36 | 36 | 0.0829 |
| 37 | 37 | 0.864 |
| 38 | 38 | 0.99 |
| 39 | 39 | 0.0723 |
| 4 | 4 | 0.122 |
| 40 | 40 | 0.895 |
| 41 | 41 | 0.555 |
| 42 | 42 | 0.193 |
| 43 | 43 | 0.741 |
| 44 | 44 | 0.547 |
| 45 | 45 | 0.173 |
| 46 | 46 | 0.442 |
| 47 | 47 | 0.071 |
| 48 | 48 | 0.509 |
| 49 | 49 | 0.468 |
| 5 | 5 | 0.837 |
| 50 | 50 | 0.502 |
| 51 | 51 | 0.599 |
| 52 | 52 | 0.0199 |
| 53 | 53 | 0.65 |
| 54 | 54 | 0.345 |
| 55 | 55 | 0.269 |
| 56 | 56 | 0.79 |
| 57 | 57 | 0.58 |
| 58 | 58 | 0.627 |
| 59 | 59 | 0.23 |
| 6 | 6 | 0.485 |
| 60 | 60 | 0.16 |
| 61 | 61 | 0.27 |
| 62 | 62 | 0.742 |
| 63 | 63 | 0.987 |
| 64 | 64 | 0.636 |
| 65 | 65 | 0.471 |
| 66 | 66 | 0.0218 |
| 67 | 67 | 0.619 |
| 68 | 68 | 0.209 |
| 69 | 69 | 0.747 |
| 7 | 7 | 0.35 |
| 70 | 70 | 0.655 |
| 71 | 71 | 0.173 |
| 72 | 72 | 0.826 |
| 73 | 73 | 0.057 |
| 74 | 74 | 0.32 |
| 75 | 75 | 0.135 |
| 76 | 76 | 0.634 |
| 77 | 77 | 0.0359 |
| 78 | 78 | 0.538 |
| 79 | 79 | 0.0324 |
| 8 | 8 | 0.854 |
| 80 | 80 | 0.515 |
| 81 | 81 | 0.704 |
| 82 | 82 | 0.711 |
| 83 | 83 | 0.77 |
| 84 | 84 | 0.711 |
| 85 | 85 | 0.026 |
| 86 | 86 | 0.621 |
| 87 | 87 | 0.397 |
| 88 | 88 | 0.786 |
| 89 | 89 | 0.0422 |
| 9 | 9 | 0.434 |
| 90 | 90 | 0.395 |
| 91 | 91 | 0.551 |
| 92 | 92 | 0.19 |
| 93 | 93 | 0.881 |
| 94 | 94 | 0.287 |
| 95 | 95 | 0.512 |
| 96 | 96 | 0.377 |
| 97 | 97 | 0.219 |
| 98 | 98 | 0.986 |
| 99 | 99 | 0.167 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11715
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104973 Hodgkin lymphoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104973 (Hodgkin lymphoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
