FFCP PHASE1:Hg19::chr2:175629150..175629163,-: Difference between revisions
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|ontology_enrichment_celltype_v019_2=CL:0000188,1.62e-29,9;CL:0000515,7.66e-18,4;CL:0005020,5.98e-11,6;CL:0002138,5.98e-11,6;CL:0005022,5.98e-11,6;CL:0000242,2.14e-09,2;CL:0000680,3.36e-08,58;CL:0000056,3.36e-08,58;CL:0000355,3.36e-08,58;CL:0000222,3.57e-08,121 | |||
|ontology_enrichment_development_v019=CL:0000515;9.46e-18;4!CL:0005022;7.68e-11;6 | |ontology_enrichment_development_v019=CL:0000515;9.46e-18;4!CL:0005022;7.68e-11;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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| ||
|short_description=p2@CHRNA1 | |short_description=p2@CHRNA1 | ||
}} | }} |
Revision as of 08:10, 18 November 2012
Short description: | p2@CHRNA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CHRNA1_5end |
Coexpression cluster: | C913_mesenchymal_Skeletal_Myoblast_extraskeletal_skeletal_rhabdomyosarcoma_small |
Association with transcript: | -10bp_to_ENST00000409219, ENST00000409542, ENST00000435083_5end |
EntrezGene: | CHRNA1 |
HGNC: | 1955 |
UniProt: | E7ENE5B8ZZD3F8WDS3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.62e-29 | 9 |
skeletal muscle myoblast | 7.66e-18 | 4 |
lymphangioblast | 5.98e-11 | 6 |
endothelial cell of lymphatic vessel | 5.98e-11 | 6 |
vascular lymphangioblast | 5.98e-11 | 6 |
Merkel cell | 2.14e-09 | 2 |
muscle precursor cell | 3.36e-08 | 58 |
myoblast | 3.36e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.36e-08 | 58 |
mesodermal cell | 3.57e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 5.01e-14 | 62 |
striated muscle tissue | 5.01e-14 | 62 |
myotome | 5.01e-14 | 62 |
muscle tissue | 1.80e-13 | 64 |
musculature | 1.80e-13 | 64 |
musculature of body | 1.80e-13 | 64 |
somite | 8.92e-12 | 71 |
presomitic mesoderm | 8.92e-12 | 71 |
presumptive segmental plate | 8.92e-12 | 71 |
dermomyotome | 8.92e-12 | 71 |
trunk paraxial mesoderm | 8.92e-12 | 71 |
paraxial mesoderm | 1.46e-11 | 72 |
presumptive paraxial mesoderm | 1.46e-11 | 72 |
dense mesenchyme tissue | 2.37e-11 | 73 |
epithelial vesicle | 2.17e-10 | 78 |
multilaminar epithelium | 1.51e-09 | 83 |
muscle structure | 4.35e-09 | 2 |
muscle organ | 4.35e-09 | 2 |
throat | 5.12e-09 | 2 |
unilaminar epithelium | 1.31e-08 | 148 |
lymphatic vessel | 3.11e-08 | 8 |
lymph vasculature | 3.11e-08 | 8 |
lymphatic part of lymphoid system | 3.11e-08 | 8 |
trunk mesenchyme | 3.48e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.