FFCP PHASE1:Mm9::chr14:122874424..122874441,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=69248|HGNC=|MCL_coexpression_id=403|UniProt=|association_with_transcript=-3bp_to_NR_045046,uc007vbc.1_5end|description=CAGE_peak_1_at_2610035F20Rik_5end|id=chr14:122874424..122874441,-|ontology_enrichment_celltype=CL:0000055!9.24e-09!50;CL:0000221!1.44e-08!44;CL:0000133!1.44e-08!44;CL:0002319!3.47e-08!43;CL:0000117!2.31e-07!23;CL:0000337!2.31e-07!23;CL:0002453!4.24e-07!8|ontology_enrichment_celltype_v019_2=CL:0000878,8.16e-09,2;CL:0000129,8.16e-09,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!7.78e-21!63;UBERON:0001017!1.19e-17!73;UBERON:0005743!1.19e-17!73;UBERON:0004121!2.66e-17!102;UBERON:0000924!2.66e-17!102;UBERON:0006601!2.66e-17!102;UBERON:0000073!8.25e-17!75;UBERON:0001016!8.25e-17!75;UBERON:0002346!2.27e-16!71;UBERON:0003075!2.27e-16!71;UBERON:0007284!2.27e-16!71;UBERON:0001049!1.85e-14!52;UBERON:0005068!1.85e-14!52;UBERON:0006241!1.85e-14!52;UBERON:0007135!1.85e-14!52;UBERON:0000955!9.30e-14!50;UBERON:0006238!9.30e-14!50;UBERON:0003056!1.56e-13!49;UBERON:0002616!6.61e-13!49;UBERON:0000153!8.02e-13!94;UBERON:0007811!1.02e-11!86;UBERON:0003076!4.02e-09!12;UBERON:0003057!4.02e-09!12;UBERON:0000020!5.71e-09!12;UBERON:0001032!5.71e-09!12;UBERON:0004456!5.71e-09!12;UBERON:0000970!1.18e-08!9;UBERON:0000019!1.18e-08!9;UBERON:0000047!1.18e-08!9;UBERON:0004088!1.18e-08!9;UBERON:0002104!1.18e-08!9;UBERON:0001456!1.18e-08!9;UBERON:0003072!1.18e-08!9;UBERON:0003071!1.18e-08!9;UBERON:0004128!1.18e-08!9;UBERON:0005085!4.74e-08!13;UBERON:0003080!1.00e-07!40;UBERON:0002780!3.03e-07!39;UBERON:0001890!3.03e-07!39;UBERON:0006240!3.03e-07!39;UBERON:0004733!3.13e-07!6;UBERON:0004732!3.13e-07!6;UBERON:0002028!3.13e-07!6;UBERON:0007277!3.13e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000020,3.38e-11,12;UBERON:0001032,3.38e-11,12;UBERON:0004456,3.38e-11,12;UBERON:0004121,3.63e-11,95;UBERON:0000924,3.63e-11,95;UBERON:0006601,3.63e-11,95;UBERON:0000970,8.66e-11,9;UBERON:0000019,8.66e-11,9;UBERON:0000047,8.66e-11,9;UBERON:0010312,8.66e-11,9;UBERON:0004088,8.66e-11,9;UBERON:0002104,8.66e-11,9;UBERON:0001456,8.66e-11,9;UBERON:0003072,8.66e-11,9;UBERON:0004128,8.66e-11,9;UBERON:0003071,8.66e-11,9;UBERON:0000033,2.72e-10,13;UBERON:0005085,2.72e-10,13;UBERON:0002037,1.00e-09,4;UBERON:0002680,1.00e-09,4;UBERON:0001895,1.00e-09,4;UBERON:0010092,1.00e-09,4;UBERON:0006215,1.00e-09,4;UBERON:0002346,3.89e-09,64;UBERON:0003075,3.89e-09,64;UBERON:0007284,3.89e-09,64;UBERON:0010371,5.49e-09,73;UBERON:0001444,8.87e-09,11;UBERON:0001017,1.36e-07,73;UBERON:0003056,2.14e-07,49;UBERON:0001016,2.55e-07,75|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.608261587317087,1.10128051297009,1.56478268869608,0.436050312760893,0.659058548203415,0.972149495371417,0.839918529752175,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,0.633831403506179,0.338844532069132,1.77858959222228,0,0,0,1.49800055259202,2.30530983192933,0,0.270011876663381,0,0.571301968807607,0.441737081903227,0,0,0,0,0.766124028511126,0.46081959976873,1.31886287730194,1.37231465403614,0.52091337055676,1.11673199600552,0,0.45839474333043,0,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27005434620785,6.49284791121711,0,0,0,0,0.299581278809645,0,0.376963056338593,0,0,1.24672826735736,0.486723789203273,0,0,0,0,0.650602214813519,1.60931473103431,0.720248519221397,1.20563854268572,2.38127747029647,2.0498195245576,2.34254311399322,0.776110112217047,0.646703978798527,0.567318240503458,0,0.219195732427575,0.556094498451196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,1.28528526568723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.517434735131018,0,0.709360934569094,0.535106452806212,0.329098041204242,1.2178597964584,0.23467170806371,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0.167884616364078,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0.453142408984205,0,0,0,1.02440163452481,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0.256100609619477,0.0574354689556133,0,0.231768651889711,0,0,0.588795680537589,0.342869252385415,0.177475806159338,0,0,0.0941093804153306,0.25384382367503,0.182927972872773,0.526139422875686,0.135804113845862,1.12228454331548,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0.644613162144895,0,0,0|short_description=p1@2610035F20Rik}} | ||
|EntrezGene=69248 | |||
|HGNC= | |||
|MCL_coexpression_id=403 | |||
|UniProt= | |||
|association_with_transcript=-3bp_to_NR_045046,uc007vbc.1_5end | |||
|description=CAGE_peak_1_at_2610035F20Rik_5end | |||
|id=chr14:122874424..122874441,- | |||
|ontology_enrichment_celltype=CL:0000055!9.24e-09!50;CL:0000221!1.44e-08!44;CL:0000133!1.44e-08!44;CL:0002319!3.47e-08!43;CL:0000117!2.31e-07!23;CL:0000337!2.31e-07!23;CL:0002453!4.24e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000878,8.16e-09,2;CL:0000129,8.16e-09,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!7.78e-21!63;UBERON:0001017!1.19e-17!73;UBERON:0005743!1.19e-17!73;UBERON:0004121!2.66e-17!102;UBERON:0000924!2.66e-17!102;UBERON:0006601!2.66e-17!102;UBERON:0000073!8.25e-17!75;UBERON:0001016!8.25e-17!75;UBERON:0002346!2.27e-16!71;UBERON:0003075!2.27e-16!71;UBERON:0007284!2.27e-16!71;UBERON:0001049!1.85e-14!52;UBERON:0005068!1.85e-14!52;UBERON:0006241!1.85e-14!52;UBERON:0007135!1.85e-14!52;UBERON:0000955!9.30e-14!50;UBERON:0006238!9.30e-14!50;UBERON:0003056!1.56e-13!49;UBERON:0002616!6.61e-13!49;UBERON:0000153!8.02e-13!94;UBERON:0007811!1.02e-11!86;UBERON:0003076!4.02e-09!12;UBERON:0003057!4.02e-09!12;UBERON:0000020!5.71e-09!12;UBERON:0001032!5.71e-09!12;UBERON:0004456!5.71e-09!12;UBERON:0000970!1.18e-08!9;UBERON:0000019!1.18e-08!9;UBERON:0000047!1.18e-08!9;UBERON:0004088!1.18e-08!9;UBERON:0002104!1.18e-08!9;UBERON:0001456!1.18e-08!9;UBERON:0003072!1.18e-08!9;UBERON:0003071!1.18e-08!9;UBERON:0004128!1.18e-08!9;UBERON:0005085!4.74e-08!13;UBERON:0003080!1.00e-07!40;UBERON:0002780!3.03e-07!39;UBERON:0001890!3.03e-07!39;UBERON:0006240!3.03e-07!39;UBERON:0004733!3.13e-07!6;UBERON:0004732!3.13e-07!6;UBERON:0002028!3.13e-07!6;UBERON:0007277!3.13e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000020,3.38e-11,12;UBERON:0001032,3.38e-11,12;UBERON:0004456,3.38e-11,12;UBERON:0004121,3.63e-11,95;UBERON:0000924,3.63e-11,95;UBERON:0006601,3.63e-11,95;UBERON:0000970,8.66e-11,9;UBERON:0000019,8.66e-11,9;UBERON:0000047,8.66e-11,9;UBERON:0010312,8.66e-11,9;UBERON:0004088,8.66e-11,9;UBERON:0002104,8.66e-11,9;UBERON:0001456,8.66e-11,9;UBERON:0003072,8.66e-11,9;UBERON:0004128,8.66e-11,9;UBERON:0003071,8.66e-11,9;UBERON:0000033,2.72e-10,13;UBERON:0005085,2.72e-10,13;UBERON:0002037,1.00e-09,4;UBERON:0002680,1.00e-09,4;UBERON:0001895,1.00e-09,4;UBERON:0010092,1.00e-09,4;UBERON:0006215,1.00e-09,4;UBERON:0002346,3.89e-09,64;UBERON:0003075,3.89e-09,64;UBERON:0007284,3.89e-09,64;UBERON:0010371,5.49e-09,73;UBERON:0001444,8.87e-09,11;UBERON:0001017,1.36e-07,73;UBERON:0003056,2.14e-07,49;UBERON:0001016,2.55e-07,75 | |||
|phase1_expression=1.28119077683835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255129870453209,0,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.608261587317087,1.10128051297009,1.56478268869608,0.436050312760893,0.659058548203415,0.972149495371417,0.839918529752175,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,0.633831403506179,0.338844532069132,1.77858959222228,0,0,0,1.49800055259202,2.30530983192933,0,0.270011876663381,0,0.571301968807607,0.441737081903227,0,0,0,0,0.766124028511126,0.46081959976873,1.31886287730194,1.37231465403614,0.52091337055676,1.11673199600552,0,0.45839474333043,0,0.284743361598206,0.372798891650601,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.27005434620785,6.49284791121711,0,0,0,0,0.299581278809645,0,0.376963056338593,0,0,1.24672826735736,0.486723789203273,0,0,0,0,0.650602214813519,1.60931473103431,0.720248519221397,1.20563854268572,2.38127747029647,2.0498195245576,2.34254311399322,0.776110112217047,0.646703978798527,0.567318240503458,0,0.219195732427575,0.556094498451196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.630869845692382,1.13195073617213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.642202359951168,0.468846746368813,0,0,0,0,0,0,0,0,0,0,0,1.28528526568723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.540183282093931,0.517434735131018,0,0.709360934569094,0.535106452806212,0.329098041204242,1.2178597964584,0.23467170806371,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0.167884616364078,0,0,0,0,0,0.564751842617067,0,0,0,0,0,0,0,0.453142408984205,0,0,0,1.02440163452481,0.243106717068294,0,0.183843508450014,0,0,0,0,0,0.188626341386076,0,0.256100609619477,0.0574354689556133,0,0.231768651889711,0,0,0.588795680537589,0.342869252385415,0.177475806159338,0,0,0.0941093804153306,0.25384382367503,0.182927972872773,0.526139422875686,0.135804113845862,1.12228454331548,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0.249810577937946,0.233931608445408,0.644613162144895,0,0,0 | |||
|short_description=p1@2610035F20Rik | |||
}} |
Revision as of 01:37, 13 September 2013
Short description: | p1@2610035F20Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2610035F20Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:403 |
Association with transcript: | -3bp_to_NR_045046, uc007vbc.1_5end |
EntrezGene: | 2610035F20Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system macrophage | 8.16e-09 | 2 |
microglial cell | 8.16e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
sense organ | 3.38e-11 | 12 |
sensory system | 3.38e-11 | 12 |
entire sense organ system | 3.38e-11 | 12 |
ectoderm-derived structure | 3.63e-11 | 95 |
ectoderm | 3.63e-11 | 95 |
presumptive ectoderm | 3.63e-11 | 95 |
eye | 8.66e-11 | 9 |
camera-type eye | 8.66e-11 | 9 |
simple eye | 8.66e-11 | 9 |
immature eye | 8.66e-11 | 9 |
ocular region | 8.66e-11 | 9 |
visual system | 8.66e-11 | 9 |
face | 8.66e-11 | 9 |
optic cup | 8.66e-11 | 9 |
optic vesicle | 8.66e-11 | 9 |
eye primordium | 8.66e-11 | 9 |
head | 2.72e-10 | 13 |
ectodermal placode | 2.72e-10 | 13 |
cerebellum | 1.00e-09 | 4 |
regional part of metencephalon | 1.00e-09 | 4 |
metencephalon | 1.00e-09 | 4 |
future metencephalon | 1.00e-09 | 4 |
rhombic lip | 1.00e-09 | 4 |
neurectoderm | 3.89e-09 | 64 |
neural plate | 3.89e-09 | 64 |
presumptive neural plate | 3.89e-09 | 64 |
ecto-epithelium | 5.49e-09 | 73 |
subdivision of head | 8.87e-09 | 11 |
central nervous system | 1.36e-07 | 73 |
pre-chordal neural plate | 2.14e-07 | 49 |
nervous system | 2.55e-07 | 75 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.