FFCP PHASE1:Mm9::chr17:27166314..27166360,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=70772|HGNC=|MCL_coexpression_id=0|UniProt=Q6K1E7|association_with_transcript=110bp_to_ENSMUST00000053683,NM_027544_5end|description=CAGE_peak_3_at_Ggnbp1_5end|id=chr17:27166314..27166360,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003135!1.38e-08!15;UBERON:0003101!4.90e-08!16;UBERON:0000079!4.90e-08!16;UBERON:0001301!1.13e-07!3;UBERON:0006555!1.13e-07!3;UBERON:0005103!1.13e-07!3;UBERON:0000083!1.13e-07!3;UBERON:0009201!1.13e-07!3;UBERON:0004819!1.13e-07!3;UBERON:0006553!1.13e-07!3;UBERON:0003074!1.13e-07!3;UBERON:0003060!1.13e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0003135,1.63e-18,15;UBERON:0003101,2.23e-17,16;UBERON:0000079,2.23e-17,16;UBERON:0001301,3.97e-15,3;UBERON:0006555,3.97e-15,3;UBERON:0005103,3.97e-15,3;UBERON:0000083,3.97e-15,3;UBERON:0009201,3.97e-15,3;UBERON:0004819,3.97e-15,3;UBERON:0006553,3.97e-15,3;UBERON:0003074,3.97e-15,3;UBERON:0003060,3.97e-15,3;UBERON:0000473,4.21e-13,14;UBERON:0003133,1.12e-11,24;UBERON:0000080,1.33e-11,4;UBERON:0005904,1.33e-11,4;UBERON:0006947,1.33e-11,4;UBERON:0002120,1.33e-11,4;UBERON:0004054,1.33e-11,4;UBERON:0004875,1.33e-11,4;UBERON:0004876,1.33e-11,4;UBERON:0005721,1.33e-11,4;UBERON:0005754,1.33e-11,4;UBERON:0007297,1.33e-11,4;UBERON:0004176,7.24e-11,17;UBERON:0009196,7.24e-11,17;UBERON:0009117,7.24e-11,17;UBERON:0005156,8.51e-11,26;UBERON:0000990,8.51e-11,26;UBERON:0000991,2.76e-10,18;UBERON:0005564,2.76e-10,18;UBERON:0003886,1.93e-07,38;UBERON:0002553,2.98e-07,39;UBERON:0000058,5.00e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,187.265324912656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,25.9822177243741,0,0,0,0,0,0,0,0,0,0,28.545969929765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36847667671102,1.26361379216837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,1251.3983238789,0,0,0,0,0,0,0,0,455.386067757021,695.016405100229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0|short_description=p3@Ggnbp1}} | ||
|EntrezGene=70772 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|UniProt=Q6K1E7 | |||
|association_with_transcript=110bp_to_ENSMUST00000053683,NM_027544_5end | |||
|description=CAGE_peak_3_at_Ggnbp1_5end | |||
|id=chr17:27166314..27166360,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!1.38e-08!15;UBERON:0003101!4.90e-08!16;UBERON:0000079!4.90e-08!16;UBERON:0001301!1.13e-07!3;UBERON:0006555!1.13e-07!3;UBERON:0005103!1.13e-07!3;UBERON:0000083!1.13e-07!3;UBERON:0009201!1.13e-07!3;UBERON:0004819!1.13e-07!3;UBERON:0006553!1.13e-07!3;UBERON:0003074!1.13e-07!3;UBERON:0003060!1.13e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003135,1.63e-18,15;UBERON:0003101,2.23e-17,16;UBERON:0000079,2.23e-17,16;UBERON:0001301,3.97e-15,3;UBERON:0006555,3.97e-15,3;UBERON:0005103,3.97e-15,3;UBERON:0000083,3.97e-15,3;UBERON:0009201,3.97e-15,3;UBERON:0004819,3.97e-15,3;UBERON:0006553,3.97e-15,3;UBERON:0003074,3.97e-15,3;UBERON:0003060,3.97e-15,3;UBERON:0000473,4.21e-13,14;UBERON:0003133,1.12e-11,24;UBERON:0000080,1.33e-11,4;UBERON:0005904,1.33e-11,4;UBERON:0006947,1.33e-11,4;UBERON:0002120,1.33e-11,4;UBERON:0004054,1.33e-11,4;UBERON:0004875,1.33e-11,4;UBERON:0004876,1.33e-11,4;UBERON:0005721,1.33e-11,4;UBERON:0005754,1.33e-11,4;UBERON:0007297,1.33e-11,4;UBERON:0004176,7.24e-11,17;UBERON:0009196,7.24e-11,17;UBERON:0009117,7.24e-11,17;UBERON:0005156,8.51e-11,26;UBERON:0000990,8.51e-11,26;UBERON:0000991,2.76e-10,18;UBERON:0005564,2.76e-10,18;UBERON:0003886,1.93e-07,38;UBERON:0002553,2.98e-07,39;UBERON:0000058,5.00e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.171200729931206,0.0874204024189974,0,0,0,0,0,0,187.265324912656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.56276261003168,0,0,0,0,0,0,0,0,0,0,0,0,25.9822177243741,0,0,0,0,0,0,0,0,0,0,28.545969929765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36847667671102,1.26361379216837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,0,0,1251.3983238789,0,0,0,0,0,0,0,0,455.386067757021,695.016405100229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0.170733605754134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@Ggnbp1 | |||
}} |
Revision as of 13:52, 13 September 2013
Short description: | p3@Ggnbp1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ggnbp1_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 110bp_to_ENSMUST00000053683, NM_027544_5end |
EntrezGene: | Ggnbp1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male reproductive organ | 1.63e-18 | 15 |
male organism | 2.23e-17 | 16 |
male reproductive system | 2.23e-17 | 16 |
epididymis | 3.97e-15 | 3 |
excretory tube | 3.97e-15 | 3 |
mesonephric epithelium | 3.97e-15 | 3 |
mesonephric tubule | 3.97e-15 | 3 |
nephric duct | 3.97e-15 | 3 |
kidney epithelium | 3.97e-15 | 3 |
renal duct | 3.97e-15 | 3 |
mesonephric duct | 3.97e-15 | 3 |
pronephric duct | 3.97e-15 | 3 |
testis | 4.21e-13 | 14 |
reproductive organ | 1.12e-11 | 24 |
mesonephros | 1.33e-11 | 4 |
duct of male reproductive system | 1.33e-11 | 4 |
male genital duct | 1.33e-11 | 4 |
pronephros | 1.33e-11 | 4 |
internal male genitalia | 1.33e-11 | 4 |
nephrogenic cord | 1.33e-11 | 4 |
urogenital ridge | 1.33e-11 | 4 |
pronephric mesoderm | 1.33e-11 | 4 |
rostral part of nephrogenic cord | 1.33e-11 | 4 |
presumptive pronephric mesoderm | 1.33e-11 | 4 |
external genitalia | 7.24e-11 | 17 |
indifferent external genitalia | 7.24e-11 | 17 |
indifferent gonad | 7.24e-11 | 17 |
reproductive structure | 8.51e-11 | 26 |
reproductive system | 8.51e-11 | 26 |
gonad | 2.76e-10 | 18 |
gonad primordium | 2.76e-10 | 18 |
body cavity precursor | 1.93e-07 | 38 |
anatomical cavity | 2.98e-07 | 39 |
duct | 5.00e-07 | 7 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.