FFCP PHASE1:Hg19::chr1:12402843..12402865,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55187|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=23595|TSSclassifier=N|UniProt=|association_with_transcript=-230bp_to_AK057675_5end|coexpression_cluster_id=C20|description=CAGE_peak_11_at_VPS13D_5end|id=chr1:12402843..12402865,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000123;4.38e-08;2!CL:0000242;4.38e-08;2|ontology_enrichment_celltype_v019_2=CL:0000242,4.69e-08,2|ontology_enrichment_development_v019=UBERON:0010227;5.06e-15;1!UBERON:0004140;7.13e-15;1!UBERON:0000358;1.00e-14;1!UBERON:0010226;1.97e-14;1!UBERON:0005062;2.41e-14;4!UBERON:0007284;2.41e-14;4!UBERON:0008814;7.27e-08;2!UBERON:0010056;7.27e-08;2|ontology_enrichment_disease=DOID:114!5.17e-07!2|ontology_enrichment_disease_v019=DOID:114;4.67e-27;2!DOID:178;1.97e-14;1!DOID:326;1.97e-14;1!DOID:3978;1.97e-14;1!DOID:3394;1.97e-14;1!DOID:5844;1.97e-14;1!DOID:1287;4.70e-14;4|ontology_enrichment_disease_v019_2=DOID:114,3.13e-27,2;DOID:178,1.84e-14,1;DOID:326,1.84e-14,1;DOID:3978,1.84e-14,1;DOID:3394,1.84e-14,1;DOID:5844,1.84e-14,1;DOID:1287,3.85e-14,4|ontology_enrichment_uberon=UBERON:0007023!1.31e-45!115;UBERON:0001893!3.94e-25!34;UBERON:0001869!2.27e-24!32;UBERON:0002791!2.52e-23!33;UBERON:0002020!1.40e-22!34;UBERON:0003528!1.40e-22!34;UBERON:0002619!1.92e-22!22;UBERON:0002780!2.05e-22!41;UBERON:0001890!2.05e-22!41;UBERON:0006240!2.05e-22!41;UBERON:0000956!2.75e-22!25;UBERON:0000203!2.75e-22!25;UBERON:0003080!9.29e-22!42;UBERON:0001950!1.44e-21!20;UBERON:0001049!1.16e-19!57;UBERON:0005068!1.16e-19!57;UBERON:0006241!1.16e-19!57;UBERON:0007135!1.16e-19!57;UBERON:0002616!4.61e-17!59;UBERON:0001017!7.72e-17!82;UBERON:0003075!2.97e-16!86;UBERON:0007284!2.97e-16!86;UBERON:0005743!9.76e-16!86;UBERON:0002346!3.26e-15!90;UBERON:0000955!6.04e-15!69;UBERON:0006238!6.04e-15!69;UBERON:0000073!1.34e-13!94;UBERON:0001016!1.34e-13!94;UBERON:0003056!2.27e-13!61;UBERON:0001871!1.03e-11!7;UBERON:0000200!3.52e-11!6;UBERON:0001872!5.06e-09!5;UBERON:0004121!5.68e-09!169;UBERON:0002771!7.31e-09!3;UBERON:0000924!1.39e-08!173;UBERON:0006601!1.39e-08!173;UBERON:0000153!2.28e-08!129;UBERON:0007811!2.28e-08!129;UBERON:0000033!2.61e-08!123;UBERON:0000025!5.68e-07!194;UBERON:0000064!6.17e-07!219;UBERON:0000062!7.91e-07!511|ontology_enrichment_uberon_v019=UBERON:0007100;3.14e-33;25!UBERON:0003978;8.68e-19;3!UBERON:0004151;8.68e-19;3!UBERON:0000946;8.68e-19;3!UBERON:0000948;3.35e-15;22!UBERON:0002079;5.06e-15;1!UBERON:0002146;5.06e-15;1!UBERON:0005623;5.06e-15;1!UBERON:0002084;1.97e-14;1!UBERON:0002135;1.97e-14;1!UBERON:0002082;1.97e-14;1!UBERON:0002081;3.69e-08;2!UBERON:0002702;7.27e-08;2!UBERON:0002133;7.27e-08;2!UBERON:0003103;8.29e-07;61|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.26e-31,27;UBERON:0003978,6.06e-19,3;UBERON:0009751,6.06e-19,3;UBERON:0000946,6.06e-19,3;UBERON:0002523,6.06e-19,3;UBERON:0005983,6.06e-19,3;UBERON:0002165,6.06e-19,3;UBERON:0002062,6.06e-19,3;UBERON:0007280,6.06e-19,3;UBERON:0004151,1.14e-18,3;UBERON:0002146,4.73e-15,1;UBERON:0005623,4.73e-15,1;UBERON:0002079,5.42e-15,1;UBERON:0003103,6.51e-15,68;UBERON:0002135,1.23e-14,1;UBERON:0002084,2.75e-14,1;UBERON:0002082,2.75e-14,1;UBERON:0010226,2.75e-14,1;UBERON:0000948,6.02e-14,24;UBERON:0005498,6.02e-14,24;UBERON:0004140,6.02e-14,24;UBERON:0009881,6.02e-14,24;UBERON:0004141,6.02e-14,24;UBERON:0003084,6.02e-14,24;UBERON:0007005,6.02e-14,24;UBERON:0004139,6.02e-14,24;UBERON:0004291,6.02e-14,24;UBERON:0007023,1.58e-10,114;UBERON:0004797,1.17e-08,7;UBERON:0002081,3.82e-08,2;UBERON:0010227,3.82e-08,2;UBERON:0002133,5.74e-08,2;UBERON:0002702,8.04e-08,2;UBERON:0010314,4.39e-07,132;UBERON:0001009,7.46e-07,112|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0.196468613246569,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0.197286811273867,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55187 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=23595 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-230bp_to_AK057675_5end | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_11_at_VPS13D_5end | |||
|id=chr1:12402843..12402865,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;4.38e-08;2!CL:0000242;4.38e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,4.69e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0010227;5.06e-15;1!UBERON:0004140;7.13e-15;1!UBERON:0000358;1.00e-14;1!UBERON:0010226;1.97e-14;1!UBERON:0005062;2.41e-14;4!UBERON:0007284;2.41e-14;4!UBERON:0008814;7.27e-08;2!UBERON:0010056;7.27e-08;2 | |||
|ontology_enrichment_disease=DOID:114!5.17e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:114;4.67e-27;2!DOID:178;1.97e-14;1!DOID:326;1.97e-14;1!DOID:3978;1.97e-14;1!DOID:3394;1.97e-14;1!DOID:5844;1.97e-14;1!DOID:1287;4.70e-14;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.13e-27,2;DOID:178,1.84e-14,1;DOID:326,1.84e-14,1;DOID:3978,1.84e-14,1;DOID:3394,1.84e-14,1;DOID:5844,1.84e-14,1;DOID:1287,3.85e-14,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.31e-45!115;UBERON:0001893!3.94e-25!34;UBERON:0001869!2.27e-24!32;UBERON:0002791!2.52e-23!33;UBERON:0002020!1.40e-22!34;UBERON:0003528!1.40e-22!34;UBERON:0002619!1.92e-22!22;UBERON:0002780!2.05e-22!41;UBERON:0001890!2.05e-22!41;UBERON:0006240!2.05e-22!41;UBERON:0000956!2.75e-22!25;UBERON:0000203!2.75e-22!25;UBERON:0003080!9.29e-22!42;UBERON:0001950!1.44e-21!20;UBERON:0001049!1.16e-19!57;UBERON:0005068!1.16e-19!57;UBERON:0006241!1.16e-19!57;UBERON:0007135!1.16e-19!57;UBERON:0002616!4.61e-17!59;UBERON:0001017!7.72e-17!82;UBERON:0003075!2.97e-16!86;UBERON:0007284!2.97e-16!86;UBERON:0005743!9.76e-16!86;UBERON:0002346!3.26e-15!90;UBERON:0000955!6.04e-15!69;UBERON:0006238!6.04e-15!69;UBERON:0000073!1.34e-13!94;UBERON:0001016!1.34e-13!94;UBERON:0003056!2.27e-13!61;UBERON:0001871!1.03e-11!7;UBERON:0000200!3.52e-11!6;UBERON:0001872!5.06e-09!5;UBERON:0004121!5.68e-09!169;UBERON:0002771!7.31e-09!3;UBERON:0000924!1.39e-08!173;UBERON:0006601!1.39e-08!173;UBERON:0000153!2.28e-08!129;UBERON:0007811!2.28e-08!129;UBERON:0000033!2.61e-08!123;UBERON:0000025!5.68e-07!194;UBERON:0000064!6.17e-07!219;UBERON:0000062!7.91e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.14e-33;25!UBERON:0003978;8.68e-19;3!UBERON:0004151;8.68e-19;3!UBERON:0000946;8.68e-19;3!UBERON:0000948;3.35e-15;22!UBERON:0002079;5.06e-15;1!UBERON:0002146;5.06e-15;1!UBERON:0005623;5.06e-15;1!UBERON:0002084;1.97e-14;1!UBERON:0002135;1.97e-14;1!UBERON:0002082;1.97e-14;1!UBERON:0002081;3.69e-08;2!UBERON:0002702;7.27e-08;2!UBERON:0002133;7.27e-08;2!UBERON:0003103;8.29e-07;61 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,8.26e-31,27;UBERON:0003978,6.06e-19,3;UBERON:0009751,6.06e-19,3;UBERON:0000946,6.06e-19,3;UBERON:0002523,6.06e-19,3;UBERON:0005983,6.06e-19,3;UBERON:0002165,6.06e-19,3;UBERON:0002062,6.06e-19,3;UBERON:0007280,6.06e-19,3;UBERON:0004151,1.14e-18,3;UBERON:0002146,4.73e-15,1;UBERON:0005623,4.73e-15,1;UBERON:0002079,5.42e-15,1;UBERON:0003103,6.51e-15,68;UBERON:0002135,1.23e-14,1;UBERON:0002084,2.75e-14,1;UBERON:0002082,2.75e-14,1;UBERON:0010226,2.75e-14,1;UBERON:0000948,6.02e-14,24;UBERON:0005498,6.02e-14,24;UBERON:0004140,6.02e-14,24;UBERON:0009881,6.02e-14,24;UBERON:0004141,6.02e-14,24;UBERON:0003084,6.02e-14,24;UBERON:0007005,6.02e-14,24;UBERON:0004139,6.02e-14,24;UBERON:0004291,6.02e-14,24;UBERON:0007023,1.58e-10,114;UBERON:0004797,1.17e-08,7;UBERON:0002081,3.82e-08,2;UBERON:0010227,3.82e-08,2;UBERON:0002133,5.74e-08,2;UBERON:0002702,8.04e-08,2;UBERON:0010314,4.39e-07,132;UBERON:0001009,7.46e-07,112 | |||
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|short_description=p11@VPS13D | |||
}} |
Revision as of 23:54, 11 September 2013
Short description: | p11@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_VPS13D_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | -230bp_to_AK057675_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 4.69e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 8.26e-31 | 27 |
valve | 6.06e-19 | 3 |
cardiac mesenchyme | 6.06e-19 | 3 |
cardial valve | 6.06e-19 | 3 |
tunica intima | 6.06e-19 | 3 |
heart layer | 6.06e-19 | 3 |
endocardium | 6.06e-19 | 3 |
endocardial cushion | 6.06e-19 | 3 |
presumptive endocardium | 6.06e-19 | 3 |
cardiac chamber | 1.14e-18 | 3 |
pulmonary valve | 4.73e-15 | 1 |
semi-lunar valve | 4.73e-15 | 1 |
left cardiac atrium | 5.42e-15 | 1 |
compound organ | 6.51e-15 | 68 |
mitral valve | 1.23e-14 | 1 |
heart left ventricle | 2.75e-14 | 1 |
cardiac ventricle | 2.75e-14 | 1 |
future cardiac ventricle | 2.75e-14 | 1 |
heart | 6.02e-14 | 24 |
primitive heart tube | 6.02e-14 | 24 |
primary heart field | 6.02e-14 | 24 |
anterior lateral plate mesoderm | 6.02e-14 | 24 |
heart tube | 6.02e-14 | 24 |
heart primordium | 6.02e-14 | 24 |
cardiac mesoderm | 6.02e-14 | 24 |
cardiogenic plate | 6.02e-14 | 24 |
heart rudiment | 6.02e-14 | 24 |
adult organism | 1.58e-10 | 114 |
blood vessel layer | 1.17e-08 | 7 |
cardiac atrium | 3.82e-08 | 2 |
future cardiac atrium | 3.82e-08 | 2 |
atrioventricular valve | 5.74e-08 | 2 |
middle frontal gyrus | 8.04e-08 | 2 |
structure with developmental contribution from neural crest | 4.39e-07 | 132 |
circulatory system | 7.46e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.13e-27 | 2 |
vascular disease | 1.84e-14 | 1 |
ischemia | 1.84e-14 | 1 |
extrinsic cardiomyopathy | 1.84e-14 | 1 |
myocardial ischemia | 1.84e-14 | 1 |
myocardial infarction | 1.84e-14 | 1 |
cardiovascular system disease | 3.85e-14 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.