FFCP PHASE1:Hg19::chr1:55446284..55446319,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=199964|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27296|TSSclassifier=S|UniProt=Q8N0U2|association_with_transcript=-145bp_to_ENST00000371268,NM_182532,uc001cyd.2_5end|description=CAGE_peak_1_at_TMEM61_5end|id=chr1:55446284..55446319,+|ontology_enrichment_celltype=CL:0000066!8.87e-15!254;CL:0002076!8.14e-11!43;CL:0000223!3.36e-07!59|ontology_enrichment_celltype_v019=CL:0002368;5.67e-12;13!CL:0000244;4.38e-10;4!CL:0000731;4.38e-10;4!CL:0002076;9.04e-09;42!CL:0002202;2.50e-08;9!CL:0002632;2.50e-08;9!CL:0000307;3.49e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,4.67e-12,42;CL:0002368,5.93e-12,13;CL:0000244,6.19e-10,4;CL:0000731,6.19e-10,4;CL:0000066,1.90e-09,253;CL:0002202,3.06e-08,9;CL:0002632,3.06e-08,9;CL:0000223,1.46e-07,58;CL:0000068,5.27e-07,3;CL:0000069,5.27e-07,3;CL:0000307,5.27e-07,3;CL:0000377,5.27e-07,3|ontology_enrichment_development_v019=UBERON:0006215;3.48e-08;3!CL:0000377;3.49e-07;3!UBERON:0009847;3.49e-07;3!UBERON:0003353;3.49e-07;3|ontology_enrichment_disease=DOID:305!9.80e-09!106;DOID:1749!4.27e-07!14|ontology_enrichment_disease_v019=DOID:1749;2.80e-07;14|ontology_enrichment_disease_v019_2=DOID:1749,2.87e-07,14|ontology_enrichment_uberon=UBERON:0007023!9.11e-21!115;UBERON:0004119!1.42e-16!169;UBERON:0000925!1.42e-16!169;UBERON:0006595!1.42e-16!169;UBERON:0000153!8.19e-16!129;UBERON:0007811!8.19e-16!129;UBERON:0000033!1.01e-15!123;UBERON:0001004!3.94e-14!72;UBERON:0000481!1.22e-13!347;UBERON:0001049!2.57e-13!57;UBERON:0005068!2.57e-13!57;UBERON:0006241!2.57e-13!57;UBERON:0007135!2.57e-13!57;UBERON:0001007!3.97e-13!155;UBERON:0001555!3.97e-13!155;UBERON:0007026!3.97e-13!155;UBERON:0000064!4.14e-12!219;UBERON:0002616!1.66e-11!59;UBERON:0000062!1.88e-11!511;UBERON:0004111!5.85e-11!241;UBERON:0004921!9.62e-11!129;UBERON:0004185!9.62e-11!129;UBERON:0000477!2.41e-10!286;UBERON:0003075!6.30e-10!86;UBERON:0007284!6.30e-10!86;UBERON:0000922!7.04e-10!612;UBERON:0000955!9.71e-10!69;UBERON:0006238!9.71e-10!69;UBERON:0000065!9.88e-10!53;UBERON:0004121!1.10e-09!169;UBERON:0000467!1.63e-09!625;UBERON:0000468!1.84e-09!659;UBERON:0000480!2.09e-09!626;UBERON:0002050!3.66e-09!605;UBERON:0005423!3.66e-09!605;UBERON:0000475!5.35e-09!365;UBERON:0000924!5.59e-09!173;UBERON:0006601!5.59e-09!173;UBERON:0000923!6.71e-09!604;UBERON:0005291!6.71e-09!604;UBERON:0006598!6.71e-09!604;UBERON:0002532!6.71e-09!604;UBERON:0002346!7.32e-09!90;UBERON:0003080!1.02e-08!42;UBERON:0005743!1.81e-08!86;UBERON:0001017!1.91e-08!82;UBERON:0000161!1.92e-08!35;UBERON:0002780!3.95e-08!41;UBERON:0001890!3.95e-08!41;UBERON:0006240!3.95e-08!41;UBERON:0000077!4.30e-08!130;UBERON:0008947!5.19e-08!38;UBERON:0003258!5.19e-08!38;UBERON:0000166!7.26e-08!21;UBERON:0000464!9.83e-08!104;UBERON:0000063!1.08e-07!97;UBERON:0003056!1.22e-07!61;UBERON:0001041!4.71e-07!98;UBERON:0000483!7.22e-07!309;UBERON:0000073!7.54e-07!94;UBERON:0001016!7.54e-07!94;UBERON:0000119!8.93e-07!312|ontology_enrichment_uberon_v019=UBERON:0000365;4.74e-08;5!UBERON:0006947;8.94e-08;3!UBERON:0004054;8.94e-08;3!UBERON:0006554;2.65e-07;30!UBERON:0001008;2.65e-07;30!UBERON:0005178;3.98e-07;34!UBERON:0002224;3.98e-07;34!UBERON:0005181;4.60e-07;35|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.80e-11,47;UBERON:0001008,3.89e-11,48;UBERON:0004119,3.60e-10,160;UBERON:0000925,3.60e-10,160;UBERON:0006595,3.60e-10,160;UBERON:0007023,5.64e-09,114;UBERON:0005178,2.54e-08,34;UBERON:0002224,2.54e-08,34;UBERON:0001004,2.77e-08,74;UBERON:0000161,4.98e-08,36;UBERON:0005181,5.33e-08,35;UBERON:0000365,6.22e-08,5;UBERON:0006947,7.55e-08,3;UBERON:0004054,7.55e-08,3;UBERON:0005177,7.33e-07,101;UBERON:0001007,8.55e-07,145;UBERON:0001555,8.55e-07,145;UBERON:0007026,8.55e-07,145;UBERON:0002680,9.46e-07,9;UBERON:0001895,9.46e-07,9;UBERON:0010092,9.46e-07,9|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,1.22866968250754,3.48900583986214,0.218441372130172,2.11013582582763,0,0,1.34465029290355,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0.486634870302636,0.0945348171640679,0,0,0.72038491523742,3.27865759463288,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.976248230192678,0,0,0,0,0.112611480483322,0,0,0,0,0,1.3082821564276,0,0,0.132409180813219,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73934767846967,0.818238361772504,1.72082757233402,0,0,0,0.10366105501537,0.504641701751257,0,0,0,1.38134921352481,0,0,0.709840800239063,0,0,0.330881918197182,0.435758888184812,0.474541238222193,0.539325232640658,0.392442930250692,0.38474715694639,0,0,0.4115740113314,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=199964 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27296 | |||
|TSSclassifier=S | |||
|UniProt=Q8N0U2 | |||
|association_with_transcript=-145bp_to_ENST00000371268,NM_182532,uc001cyd.2_5end | |||
|description=CAGE_peak_1_at_TMEM61_5end | |||
|id=chr1:55446284..55446319,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.87e-15!254;CL:0002076!8.14e-11!43;CL:0000223!3.36e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002368;5.67e-12;13!CL:0000244;4.38e-10;4!CL:0000731;4.38e-10;4!CL:0002076;9.04e-09;42!CL:0002202;2.50e-08;9!CL:0002632;2.50e-08;9!CL:0000307;3.49e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,4.67e-12,42;CL:0002368,5.93e-12,13;CL:0000244,6.19e-10,4;CL:0000731,6.19e-10,4;CL:0000066,1.90e-09,253;CL:0002202,3.06e-08,9;CL:0002632,3.06e-08,9;CL:0000223,1.46e-07,58;CL:0000068,5.27e-07,3;CL:0000069,5.27e-07,3;CL:0000307,5.27e-07,3;CL:0000377,5.27e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.48e-08;3!CL:0000377;3.49e-07;3!UBERON:0009847;3.49e-07;3!UBERON:0003353;3.49e-07;3 | |||
|ontology_enrichment_disease=DOID:305!9.80e-09!106;DOID:1749!4.27e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.80e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.87e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.11e-21!115;UBERON:0004119!1.42e-16!169;UBERON:0000925!1.42e-16!169;UBERON:0006595!1.42e-16!169;UBERON:0000153!8.19e-16!129;UBERON:0007811!8.19e-16!129;UBERON:0000033!1.01e-15!123;UBERON:0001004!3.94e-14!72;UBERON:0000481!1.22e-13!347;UBERON:0001049!2.57e-13!57;UBERON:0005068!2.57e-13!57;UBERON:0006241!2.57e-13!57;UBERON:0007135!2.57e-13!57;UBERON:0001007!3.97e-13!155;UBERON:0001555!3.97e-13!155;UBERON:0007026!3.97e-13!155;UBERON:0000064!4.14e-12!219;UBERON:0002616!1.66e-11!59;UBERON:0000062!1.88e-11!511;UBERON:0004111!5.85e-11!241;UBERON:0004921!9.62e-11!129;UBERON:0004185!9.62e-11!129;UBERON:0000477!2.41e-10!286;UBERON:0003075!6.30e-10!86;UBERON:0007284!6.30e-10!86;UBERON:0000922!7.04e-10!612;UBERON:0000955!9.71e-10!69;UBERON:0006238!9.71e-10!69;UBERON:0000065!9.88e-10!53;UBERON:0004121!1.10e-09!169;UBERON:0000467!1.63e-09!625;UBERON:0000468!1.84e-09!659;UBERON:0000480!2.09e-09!626;UBERON:0002050!3.66e-09!605;UBERON:0005423!3.66e-09!605;UBERON:0000475!5.35e-09!365;UBERON:0000924!5.59e-09!173;UBERON:0006601!5.59e-09!173;UBERON:0000923!6.71e-09!604;UBERON:0005291!6.71e-09!604;UBERON:0006598!6.71e-09!604;UBERON:0002532!6.71e-09!604;UBERON:0002346!7.32e-09!90;UBERON:0003080!1.02e-08!42;UBERON:0005743!1.81e-08!86;UBERON:0001017!1.91e-08!82;UBERON:0000161!1.92e-08!35;UBERON:0002780!3.95e-08!41;UBERON:0001890!3.95e-08!41;UBERON:0006240!3.95e-08!41;UBERON:0000077!4.30e-08!130;UBERON:0008947!5.19e-08!38;UBERON:0003258!5.19e-08!38;UBERON:0000166!7.26e-08!21;UBERON:0000464!9.83e-08!104;UBERON:0000063!1.08e-07!97;UBERON:0003056!1.22e-07!61;UBERON:0001041!4.71e-07!98;UBERON:0000483!7.22e-07!309;UBERON:0000073!7.54e-07!94;UBERON:0001016!7.54e-07!94;UBERON:0000119!8.93e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.74e-08;5!UBERON:0006947;8.94e-08;3!UBERON:0004054;8.94e-08;3!UBERON:0006554;2.65e-07;30!UBERON:0001008;2.65e-07;30!UBERON:0005178;3.98e-07;34!UBERON:0002224;3.98e-07;34!UBERON:0005181;4.60e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.80e-11,47;UBERON:0001008,3.89e-11,48;UBERON:0004119,3.60e-10,160;UBERON:0000925,3.60e-10,160;UBERON:0006595,3.60e-10,160;UBERON:0007023,5.64e-09,114;UBERON:0005178,2.54e-08,34;UBERON:0002224,2.54e-08,34;UBERON:0001004,2.77e-08,74;UBERON:0000161,4.98e-08,36;UBERON:0005181,5.33e-08,35;UBERON:0000365,6.22e-08,5;UBERON:0006947,7.55e-08,3;UBERON:0004054,7.55e-08,3;UBERON:0005177,7.33e-07,101;UBERON:0001007,8.55e-07,145;UBERON:0001555,8.55e-07,145;UBERON:0007026,8.55e-07,145;UBERON:0002680,9.46e-07,9;UBERON:0001895,9.46e-07,9;UBERON:0010092,9.46e-07,9 | |||
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| |||
|short_description=p1@TMEM61 | |||
}} |
Revision as of 06:11, 12 September 2013
Short description: | p1@TMEM61 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMEM61_5end |
Coexpression cluster: | NA |
Association with transcript: | -145bp_to_ENST00000371268, NM_182532, uc001cyd.2_5end |
EntrezGene: | TMEM61 |
HGNC: | 27296 |
UniProt: | Q8N0U2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 4.67e-12 | 42 |
respiratory epithelial cell | 5.93e-12 | 13 |
transitional epithelial cell | 6.19e-10 | 4 |
urothelial cell | 6.19e-10 | 4 |
epithelial cell | 1.90e-09 | 253 |
epithelial cell of tracheobronchial tree | 3.06e-08 | 9 |
epithelial cell of lower respiratory tract | 3.06e-08 | 9 |
endodermal cell | 1.46e-07 | 58 |
duct epithelial cell | 5.27e-07 | 3 |
branched duct epithelial cell | 5.27e-07 | 3 |
tracheal epithelial cell | 5.27e-07 | 3 |
tracheoblast | 5.27e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.80e-11 | 47 |
renal system | 3.89e-11 | 48 |
endoderm-derived structure | 3.60e-10 | 160 |
endoderm | 3.60e-10 | 160 |
presumptive endoderm | 3.60e-10 | 160 |
adult organism | 5.64e-09 | 114 |
thoracic cavity element | 2.54e-08 | 34 |
thoracic cavity | 2.54e-08 | 34 |
respiratory system | 2.77e-08 | 74 |
orifice | 4.98e-08 | 36 |
thoracic segment organ | 5.33e-08 | 35 |
urothelium | 6.22e-08 | 5 |
male genital duct | 7.55e-08 | 3 |
internal male genitalia | 7.55e-08 | 3 |
trunk region element | 7.33e-07 | 101 |
digestive system | 8.55e-07 | 145 |
digestive tract | 8.55e-07 | 145 |
primitive gut | 8.55e-07 | 145 |
regional part of metencephalon | 9.46e-07 | 9 |
metencephalon | 9.46e-07 | 9 |
future metencephalon | 9.46e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.87e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.