FFCP PHASE1:Hg19::chr1:153935219..153935249,-: Difference between revisions
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{{FFCP | 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8987585686,0.426467963801962,0.476128862927481,0.452122368852043,0.744896571550295,0.448527450322454,1.20929600728513,0.404234377916439,0,0,0.26940821205835,0.717222053926764,0.665320713092027,0.89543595472072,1.49418284228802,0,0.359300808426348,0,0,0,0,0.402547587182052,2.56454793842586|short_description=p3@SLC39A1}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=27173 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12876 | |||
|TSSclassifier=S | |||
|UniProt=Q9NY26 | |||
|association_with_transcript=0bp_to_AF132942,AF151829,BC003152_5end | |||
|description=CAGE_peak_3_at_SLC39A1_5end | |||
|id=chr1:153935219..153935249,- | |||
|ontology_enrichment_celltype=CL:0002009!6.86e-23!65;CL:0002194!1.17e-21!63;CL:0000576!1.17e-21!63;CL:0000040!1.17e-21!63;CL:0000559!1.17e-21!63;CL:0000860!5.76e-20!45;CL:0002057!1.28e-19!42;CL:0000557!9.74e-19!71;CL:0000839!4.44e-17!70;CL:0000766!1.99e-15!76;CL:0000548!5.41e-09!679;CL:0000004!5.41e-09!679;CL:0000255!5.41e-09!679;CL:0000066!5.46e-09!254;CL:0000012!2.09e-08!682 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.24e-19;39!CL:0000234;1.24e-19;39!CL:0000860;8.70e-18;33!CL:0002057;8.70e-18;33!CL:0000576;7.05e-16;48!CL:0000766;2.91e-10;69!CL:0000235;1.84e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.55e-32,61;CL:0000473,2.85e-31,48;CL:0000234,2.85e-31,48;CL:0002194,1.63e-30,59;CL:0000576,1.63e-30,59;CL:0000040,1.63e-30,59;CL:0000559,1.63e-30,59;CL:0000557,1.98e-27,67;CL:0000860,1.62e-25,42;CL:0002057,1.62e-25,42;CL:0000839,4.95e-25,66;CL:0000766,4.39e-23,72;CL:0000763,1.16e-10,108;CL:0000049,1.16e-10,108;CL:0002087,3.36e-10,115;CL:0002031,2.13e-09,120;CL:0000738,5.86e-08,136;CL:0000235,2.10e-07,6;CL:1000497,8.07e-07,17;CL:0002518,8.07e-07,17 | |||
|ontology_enrichment_development_v019=CL:0002057;1.42e-17;42 | |||
|ontology_enrichment_disease=DOID:0050687!3.17e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!2.19e-19!86;UBERON:0002371!1.92e-18!80;UBERON:0002390!2.34e-18!102;UBERON:0003061!2.34e-18!102;UBERON:0002405!5.45e-17!115;UBERON:0004765!4.73e-16!101;UBERON:0001434!4.73e-16!101;UBERON:0002193!7.94e-16!112;UBERON:0000926!1.05e-11!448;UBERON:0004120!1.05e-11!448;UBERON:0006603!1.05e-11!448;UBERON:0000922!3.02e-10!612;UBERON:0003081!5.29e-10!216;UBERON:0000468!6.34e-10!659;UBERON:0000062!8.49e-10!511;UBERON:0000923!5.53e-09!604;UBERON:0005291!5.53e-09!604;UBERON:0006598!5.53e-09!604;UBERON:0002532!5.53e-09!604;UBERON:0002050!9.44e-09!605;UBERON:0005423!9.44e-09!605;UBERON:0002204!2.13e-07!167;UBERON:0000480!3.02e-07!626;UBERON:0000467!3.19e-07!625;UBERON:0002417!6.04e-07!61;UBERON:0000916!6.04e-07!61;UBERON:0005172!6.90e-07!55;UBERON:0005173!6.90e-07!55 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.05e-27,82;UBERON:0002371,4.27e-27,76;UBERON:0002390,7.38e-26,98;UBERON:0003061,7.38e-26,98;UBERON:0004765,1.09e-25,90;UBERON:0001434,3.72e-23,100;UBERON:0002193,3.84e-23,108;UBERON:0002405,2.26e-22,93;UBERON:0002204,4.05e-10,167;UBERON:0003081,4.19e-10,203;UBERON:0005172,1.94e-07,54;UBERON:0005173,1.94e-07,54;UBERON:0002417,2.23e-07,60;UBERON:0000916,2.23e-07,60;UBERON:0000926,2.28e-07,315;UBERON:0004120,2.28e-07,315;UBERON:0006603,2.28e-07,315 | |||
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| |||
|short_description=p3@SLC39A1 | |||
}} |
Revision as of 00:35, 12 September 2013
Short description: | p3@SLC39A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SLC39A1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_AF132942, AF151829, BC003152_5end |
EntrezGene: | SLC39A1 |
HGNC: | 12876 |
UniProt: | Q9NY26 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.55e-32 | 61 |
defensive cell | 2.85e-31 | 48 |
phagocyte | 2.85e-31 | 48 |
monopoietic cell | 1.63e-30 | 59 |
monocyte | 1.63e-30 | 59 |
monoblast | 1.63e-30 | 59 |
promonocyte | 1.63e-30 | 59 |
granulocyte monocyte progenitor cell | 1.98e-27 | 67 |
classical monocyte | 1.62e-25 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.62e-25 | 42 |
myeloid lineage restricted progenitor cell | 4.95e-25 | 66 |
myeloid leukocyte | 4.39e-23 | 72 |
myeloid cell | 1.16e-10 | 108 |
common myeloid progenitor | 1.16e-10 | 108 |
nongranular leukocyte | 3.36e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 2.13e-09 | 120 |
leukocyte | 5.86e-08 | 136 |
macrophage | 2.10e-07 | 6 |
kidney cell | 8.07e-07 | 17 |
kidney epithelial cell | 8.07e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
bone element | 3.05e-27 | 82 |
bone marrow | 4.27e-27 | 76 |
hematopoietic system | 7.38e-26 | 98 |
blood island | 7.38e-26 | 98 |
skeletal element | 1.09e-25 | 90 |
skeletal system | 3.72e-23 | 100 |
hemolymphoid system | 3.84e-23 | 108 |
immune system | 2.26e-22 | 93 |
musculoskeletal system | 4.05e-10 | 167 |
lateral plate mesoderm | 4.19e-10 | 203 |
abdomen element | 1.94e-07 | 54 |
abdominal segment element | 1.94e-07 | 54 |
abdominal segment of trunk | 2.23e-07 | 60 |
abdomen | 2.23e-07 | 60 |
mesoderm | 2.28e-07 | 315 |
mesoderm-derived structure | 2.28e-07 | 315 |
presumptive mesoderm | 2.28e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.