FFCP PHASE1:Hg19::chr10:112404132..112404145,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=282996|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27424|TSSclassifier=S|UniProt=Q5T481,F5GXH8|association_with_transcript=-9bp_to_ENST00000369519,ENST00000539821,NM_001134363,uc001kzf.2_5end|coexpression_cluster_id=C1104|description=CAGE_peak_4_at_RBM20_5end|id=chr10:112404132..112404145,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005062;1.64e-11;4!UBERON:0007284;1.64e-11;4!UBERON:0003104;3.56e-08;31|ontology_enrichment_disease=DOID:5409!6.47e-07!4|ontology_enrichment_disease_v019=DOID:114;6.72e-11;2!DOID:0050615;4.80e-10;16!DOID:3119;4.98e-08;14!DOID:1324;1.45e-07;15!DOID:171;2.08e-07;10!DOID:169;2.40e-07;6!DOID:3095;5.70e-07;22!DOID:2994;5.70e-07;22|ontology_enrichment_disease_v019_2=DOID:114,6.41e-11,2;DOID:0050615,4.80e-10,16;DOID:3119,5.06e-08,14;DOID:1324,1.46e-07,15;DOID:171,2.10e-07,10;DOID:169,2.54e-07,6;DOID:3095,5.74e-07,22;DOID:2994,5.74e-07,22|ontology_enrichment_uberon=UBERON:0007023!1.68e-14!115;UBERON:0000955!4.23e-12!69;UBERON:0006238!4.23e-12!69;UBERON:0002780!6.26e-10!41;UBERON:0001890!6.26e-10!41;UBERON:0006240!6.26e-10!41;UBERON:0005743!1.13e-09!86;UBERON:0001017!1.20e-09!82;UBERON:0000073!1.26e-09!94;UBERON:0001016!1.26e-09!94;UBERON:0003080!1.44e-09!42;UBERON:0001893!3.52e-09!34;UBERON:0002346!1.32e-08!90;UBERON:0002791!1.50e-08!33;UBERON:0003075!1.58e-08!86;UBERON:0007284!1.58e-08!86;UBERON:0002616!1.96e-08!59;UBERON:0003056!4.60e-08!61;UBERON:0001869!1.00e-07!32;UBERON:0002020!3.40e-07!34;UBERON:0003528!3.40e-07!34;UBERON:0001049!3.87e-07!57;UBERON:0005068!3.87e-07!57;UBERON:0006241!3.87e-07!57;UBERON:0007135!3.87e-07!57;UBERON:0007100!8.06e-07!27|ontology_enrichment_uberon_v019=UBERON:0003978;3.42e-15;3!UBERON:0000946;3.42e-15;3!UBERON:0004151;4.33e-15;3!UBERON:0007100;2.75e-14;25!UBERON:0002081;1.25e-10;2!UBERON:0002133;1.48e-10;2!UBERON:0005090;5.45e-10;2!UBERON:0001630;5.45e-10;2!UBERON:0000948;2.01e-07;22|ontology_enrichment_uberon_v019_2=UBERON:0003978,3.42e-15,3;UBERON:0009751,3.42e-15,3;UBERON:0000946,3.42e-15,3;UBERON:0002523,3.42e-15,3;UBERON:0005983,3.42e-15,3;UBERON:0002165,3.42e-15,3;UBERON:0002062,3.42e-15,3;UBERON:0007280,3.42e-15,3;UBERON:0004151,4.13e-15,3;UBERON:0007100,4.16e-13,27;UBERON:0002081,1.19e-10,2;UBERON:0010227,1.19e-10,2;UBERON:0002133,1.44e-10,2;UBERON:0005090,5.33e-10,2;UBERON:0001630,5.33e-10,2;UBERON:0004797,9.51e-07,7;UBERON:0000948,9.51e-07,24;UBERON:0005498,9.51e-07,24;UBERON:0004140,9.51e-07,24;UBERON:0009881,9.51e-07,24;UBERON:0004141,9.51e-07,24;UBERON:0003084,9.51e-07,24;UBERON:0007005,9.51e-07,24;UBERON:0004139,9.51e-07,24;UBERON:0004291,9.51e-07,24|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02179233900533,3.13536099698234,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0.534192213880424,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,1.48642540100575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.242721043499027,0,1.42068073403207,0,0,0,0,0,0,0,0,1.79323189425963,0,0,0.613612095012929,0,0,0,0,0,0.197286811273867,0,0,1.93866549219044,0.0927680981618513,0,0,0,0,0,0,0,2.06846023944879,2.04123229368278,0,0,0.361789315876224,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.335643173951685,0.189753732724185,0,0,0,0,4.11138415509973,0,0,0,0,0,0,0.134802265961354,4.81546588379273,0,0,0,0,0,0,0,0.126373159256976,1.05226393590145,0.518440956986236,0,0,0.313932918407225,0,0,0,0,0,0,1.7472666824203,0,0,0,0,0.0969890164884194,0.441280633457501,0.90392296312213,0,0,0,0,0,0,0.19980960958213,0,10.9955132319279,0,0,0.621262677827163,0,0,0,0.305994652908965,0,0.600420288709789,0,0,0,0,17.0362264776075,19.4786360409931,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=282996 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27424 | |||
|TSSclassifier=S | |||
|UniProt=Q5T481,F5GXH8 | |||
|association_with_transcript=-9bp_to_ENST00000369519,ENST00000539821,NM_001134363,uc001kzf.2_5end | |||
|coexpression_cluster_id=C1104 | |||
|description=CAGE_peak_4_at_RBM20_5end | |||
|id=chr10:112404132..112404145,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005062;1.64e-11;4!UBERON:0007284;1.64e-11;4!UBERON:0003104;3.56e-08;31 | |||
|ontology_enrichment_disease=DOID:5409!6.47e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:114;6.72e-11;2!DOID:0050615;4.80e-10;16!DOID:3119;4.98e-08;14!DOID:1324;1.45e-07;15!DOID:171;2.08e-07;10!DOID:169;2.40e-07;6!DOID:3095;5.70e-07;22!DOID:2994;5.70e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.41e-11,2;DOID:0050615,4.80e-10,16;DOID:3119,5.06e-08,14;DOID:1324,1.46e-07,15;DOID:171,2.10e-07,10;DOID:169,2.54e-07,6;DOID:3095,5.74e-07,22;DOID:2994,5.74e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.68e-14!115;UBERON:0000955!4.23e-12!69;UBERON:0006238!4.23e-12!69;UBERON:0002780!6.26e-10!41;UBERON:0001890!6.26e-10!41;UBERON:0006240!6.26e-10!41;UBERON:0005743!1.13e-09!86;UBERON:0001017!1.20e-09!82;UBERON:0000073!1.26e-09!94;UBERON:0001016!1.26e-09!94;UBERON:0003080!1.44e-09!42;UBERON:0001893!3.52e-09!34;UBERON:0002346!1.32e-08!90;UBERON:0002791!1.50e-08!33;UBERON:0003075!1.58e-08!86;UBERON:0007284!1.58e-08!86;UBERON:0002616!1.96e-08!59;UBERON:0003056!4.60e-08!61;UBERON:0001869!1.00e-07!32;UBERON:0002020!3.40e-07!34;UBERON:0003528!3.40e-07!34;UBERON:0001049!3.87e-07!57;UBERON:0005068!3.87e-07!57;UBERON:0006241!3.87e-07!57;UBERON:0007135!3.87e-07!57;UBERON:0007100!8.06e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0003978;3.42e-15;3!UBERON:0000946;3.42e-15;3!UBERON:0004151;4.33e-15;3!UBERON:0007100;2.75e-14;25!UBERON:0002081;1.25e-10;2!UBERON:0002133;1.48e-10;2!UBERON:0005090;5.45e-10;2!UBERON:0001630;5.45e-10;2!UBERON:0000948;2.01e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003978,3.42e-15,3;UBERON:0009751,3.42e-15,3;UBERON:0000946,3.42e-15,3;UBERON:0002523,3.42e-15,3;UBERON:0005983,3.42e-15,3;UBERON:0002165,3.42e-15,3;UBERON:0002062,3.42e-15,3;UBERON:0007280,3.42e-15,3;UBERON:0004151,4.13e-15,3;UBERON:0007100,4.16e-13,27;UBERON:0002081,1.19e-10,2;UBERON:0010227,1.19e-10,2;UBERON:0002133,1.44e-10,2;UBERON:0005090,5.33e-10,2;UBERON:0001630,5.33e-10,2;UBERON:0004797,9.51e-07,7;UBERON:0000948,9.51e-07,24;UBERON:0005498,9.51e-07,24;UBERON:0004140,9.51e-07,24;UBERON:0009881,9.51e-07,24;UBERON:0004141,9.51e-07,24;UBERON:0003084,9.51e-07,24;UBERON:0007005,9.51e-07,24;UBERON:0004139,9.51e-07,24;UBERON:0004291,9.51e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,1.50651167513763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34779121492523,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02179233900533,3.13536099698234,0,0,0,0,0,0.15350367472613,0,0,0.145016693914229,0.0852266274161009,0.534192213880424,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,1.48642540100575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.242721043499027,0,1.42068073403207,0,0,0,0,0,0,0,0,1.79323189425963,0,0,0.613612095012929,0,0,0,0,0,0.197286811273867,0,0,1.93866549219044,0.0927680981618513,0,0,0,0,0,0,0,2.06846023944879,2.04123229368278,0,0,0.361789315876224,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0.392125068635479,0.335643173951685,0.189753732724185,0,0,0,0,4.11138415509973,0,0,0,0,0,0,0.134802265961354,4.81546588379273,0,0,0,0,0,0,0,0.126373159256976,1.05226393590145,0.518440956986236,0,0,0.313932918407225,0,0,0,0,0,0,1.7472666824203,0,0,0,0,0.0969890164884194,0.441280633457501,0.90392296312213,0,0,0,0,0,0,0.19980960958213,0,10.9955132319279,0,0,0.621262677827163,0,0,0,0.305994652908965,0,0.600420288709789,0,0,0,0,17.0362264776075,19.4786360409931,3.58936512288407,12.7794560319354,19.7443982142823,12.0512587018611,55.963832581443,0,1.16495949527454,0,0,0,0.492137407573744,0,0,0,0,0,0,0,0,0.182248669974074,0,0.0788057072991982,0.786818822024972,0,0,0,21.440859791201,8.60719561475061,0,0,0,0,0,0,0,0,0,0,0,0,4.61934462287689,0,0,0,0,0,0,0,0,0,0,0,0,17.1188964912755,0,0,0.1251909307065,0,0,0,7.88587219136516,0.124980407962107,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04867141653695,0,7.75388431163299,0,0,2.60265104943905,0,0,0,4.00285374142735,0,0,0.128458450192919,0,0,0.205116364240755,0.252071696221718,0.0691572524642179,0,0,0,0,0,0,0,0,0.397832444232549,0.0752103283492573,0.20170506870352,0,0,0,0,0.0675375846183947,0,0.206686796501184,0.126831620387814,0,0,0,0,0,0,0.672567444437648,0,0.227662191351298,0,0,0,0.135939465953663,0.131545547125698,0,0,0.078493092850514,0.157115589916002,0,0,0,0,1.07214816264985,0.158013611732727,2.55731135809876,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.111855431797792,0,0,1.29485767437579,4.10651227424988,0,0.485710993059139,0,0.596852325484105,0.118920090777569,13.3276376805973,0.549702583727146,6.18947658623362,0.154348316215889,0.218559560503957,2.82190377816914,0,1.41405928260976,0,0,0,0,0.0939839179798536,0.0644578879735772,0.199882311849858,0,0,0,0,0,0.286679166302903,7.57303498527286,0.203974470572744,0,0,0,0,0,0.883164973845552,0,24.1994136931845,0.407955318967927,0.534434810531121,2.38926738790597,0,0.151557396436479,0,0,0.103432995861895,0.639701945702943,0.714193294391221,0,0,0,0,0,0,0,0.202056159043763,0,0.665320713092027,0.162806537221949,0,0,0,9.38563769613817,0,0,0,0,0 | |||
|short_description=p4@RBM20 | |||
}} |
Revision as of 11:44, 10 September 2013
Short description: | p4@RBM20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RBM20_5end |
Coexpression cluster: | C1104_heart_maxillary_teratocarcinoma_left_neuroblastoma_small_medulloblastoma |
Association with transcript: | -9bp_to_ENST00000369519, ENST00000539821, NM_001134363, uc001kzf.2_5end |
EntrezGene: | RBM20 |
HGNC: | 27424 |
UniProt: | Q5T481F5GXH8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
valve | 3.42e-15 | 3 |
cardiac mesenchyme | 3.42e-15 | 3 |
cardial valve | 3.42e-15 | 3 |
tunica intima | 3.42e-15 | 3 |
heart layer | 3.42e-15 | 3 |
endocardium | 3.42e-15 | 3 |
endocardial cushion | 3.42e-15 | 3 |
presumptive endocardium | 3.42e-15 | 3 |
cardiac chamber | 4.13e-15 | 3 |
primary circulatory organ | 4.16e-13 | 27 |
cardiac atrium | 1.19e-10 | 2 |
future cardiac atrium | 1.19e-10 | 2 |
atrioventricular valve | 1.44e-10 | 2 |
muscle structure | 5.33e-10 | 2 |
muscle organ | 5.33e-10 | 2 |
blood vessel layer | 9.51e-07 | 7 |
heart | 9.51e-07 | 24 |
primitive heart tube | 9.51e-07 | 24 |
primary heart field | 9.51e-07 | 24 |
anterior lateral plate mesoderm | 9.51e-07 | 24 |
heart tube | 9.51e-07 | 24 |
heart primordium | 9.51e-07 | 24 |
cardiac mesoderm | 9.51e-07 | 24 |
cardiogenic plate | 9.51e-07 | 24 |
heart rudiment | 9.51e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.41e-11 | 2 |
respiratory system cancer | 4.80e-10 | 16 |
gastrointestinal system cancer | 5.06e-08 | 14 |
lung cancer | 1.46e-07 | 15 |
neuroectodermal tumor | 2.10e-07 | 10 |
neuroendocrine tumor | 2.54e-07 | 6 |
germ cell and embryonal cancer | 5.74e-07 | 22 |
germ cell cancer | 5.74e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.