FFCP PHASE1:Hg19::chr14:50359906..50359913,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=382|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=659|TSSclassifier=S|UniProt=P62330|association_with_transcript=-474bp_to_AF047432_5end|description=CAGE_peak_13_at_ARF6_5end|id=chr14:50359906..50359913,+|ontology_enrichment_celltype=CL:0000860!1.34e-20!45;CL:0002057!4.02e-20!42;CL:0002009!1.44e-15!65;CL:0000557!2.02e-15!71;CL:0002194!2.51e-14!63;CL:0000576!2.51e-14!63;CL:0000040!2.51e-14!63;CL:0000559!2.51e-14!63;CL:0000766!1.19e-13!76;CL:0000839!1.08e-12!70;CL:0000738!2.18e-10!140;CL:0000063!1.00e-09!578;CL:0002087!5.16e-09!119;CL:0000763!1.48e-08!112;CL:0000049!1.48e-08!112;CL:0002031!3.55e-08!124;CL:0000134!4.15e-08!358;CL:0002320!7.01e-08!365|ontology_enrichment_celltype_v019=CL:0000860;5.95e-16;33!CL:0002057;5.95e-16;33!CL:0000473;1.65e-12;39!CL:0000234;1.65e-12;39!CL:0000576;5.92e-11;48!CL:0000346;3.16e-10;3!CL:1000428;3.16e-10;3!CL:0000766;6.43e-09;69!CL:0002393;9.93e-09;6!CL:0002397;9.93e-09;6!CL:0001014;8.48e-08;2!CL:0001016;8.48e-08;2|ontology_enrichment_celltype_v019_2=CL:0000860,6.79e-21,42;CL:0002057,6.79e-21,42;CL:0000473,5.63e-20,48;CL:0000234,5.63e-20,48;CL:0002009,3.69e-18,61;CL:0000557,7.44e-18,67;CL:0002194,5.21e-15,59;CL:0000576,5.21e-15,59;CL:0000040,5.21e-15,59;CL:0000559,5.21e-15,59;CL:0000766,1.27e-14,72;CL:0000839,6.03e-13,66;CL:0000763,2.30e-11,108;CL:0000049,2.30e-11,108;CL:0000738,1.01e-10,136;CL:0002031,1.19e-10,120;CL:0000346,1.26e-10,3;CL:1000428,1.26e-10,3;CL:0002087,3.69e-09,115;CL:0002032,6.56e-09,161;CL:0000837,6.56e-09,161;CL:0000037,2.86e-08,168;CL:0000988,3.01e-08,177;CL:0001014,5.00e-08,2;CL:0001016,5.00e-08,2|ontology_enrichment_development_v019=CL:0002057;4.16e-15;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!4.97e-17!80;UBERON:0001474!9.78e-16!86;UBERON:0004765!2.53e-14!101;UBERON:0001434!2.53e-14!101;UBERON:0002390!7.86e-13!102;UBERON:0003061!7.86e-13!102;UBERON:0002193!1.01e-10!112;UBERON:0002405!7.20e-10!115;UBERON:0002384!3.65e-08!375;UBERON:0002204!4.66e-08!167;UBERON:0000926!9.15e-08!448;UBERON:0004120!9.15e-08!448;UBERON:0006603!9.15e-08!448|ontology_enrichment_uberon_v019=UBERON:0000412;3.16e-10;3!UBERON:0001992;3.16e-10;3|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.75e-18,76;UBERON:0001474,1.07e-16,82;UBERON:0002405,2.26e-15,93;UBERON:0004765,1.09e-14,90;UBERON:0002390,1.99e-14,98;UBERON:0003061,1.99e-14,98;UBERON:0002193,1.03e-13,108;UBERON:0001434,1.23e-12,100;UBERON:0000412,1.26e-10,3;UBERON:0001992,1.26e-10,3;UBERON:0002204,4.13e-09,167;UBERON:0003081,1.17e-07,203|phase1_expression=0,0,0.140954404095971,0,0.446961094427288,0,0,0,0,0.245733936501509,0,0.436882744260345,0.791300934685361,0.123766352960047,0.662794751455832,0,0,0,0,0.123121058076788,0.408001382488506,0,0.286235987131057,0,0.251085279189606,0,0,0,2.36018566109342,0.767658796194425,1.70297735647684,0.919421224478927,0.30120591877825,0.369754010166788,0.154934401160603,0,0,1.66198622559563,1.40381113229099,0.651032612147555,0.447830948479849,0,0,1.01778767145695,1.13362783106643,2.66842467306598,2.55671940596253,1.23350366406548,1.23882548358041,0.28769239232215,0.768482119587302,0.709446689665756,1.03423704220986,0.645484683583826,1.35426486594342,2.63539275359647,0.818718450173537,1.12361742222542,3.67300670845083,1.28371610830437,0.639337125799041,0.659702600373432,0.997318288108159,0.852449501065388,0.870627715885752,0,0,1.00499466102697,0,0.65156653411535,2.42159801053347,0.736555271975129,0.632924774881769,1.69004229049553,1.27562579979026,0.838634582033504,0.336985893439485,0.300353785683013,0.16072558669708,0.855038231223746,0.39783335439818,0.547992461293902,0,0,0,0,0.400395987036012,0,0,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0.393419540227666,0,1.43921049299656,0.167186495390678,0.651844533267181,0,0,1.00269411196656,0,0,0,1.0247305578054,0.780356085359269,1.15106533222573,0.552700035571697,0.579606171470105,0,0.535081656179426,0,0.566546713487831,0,0,0.253019692019503,0,0,0,0,0.127986611154418,0,0,0,0.80642697289893,0.267440195783507,0.434473211648397,0,0,0.12786256184353,0.722878304769133,0.50133791063589,0.434539556882471,0,0,0,0,0.087834785693126,0.0654895377488563,0,0.370784442784429,0,0.348259474598534,0,0.238490624305342,0,0.74291500265913,0,0,0,0.56530794192401,0,0,0.208994966536811,0.258416759169329,0,0,0.805658634218294,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0,1.05927344650575,0,0.709336764396714,0,0,0.24666754841716,0,0,0,0,0,0,0.312160076830321,0.570471821544449,0.597794722207204,0,0.161872944368132,0,0.204154171254893,0,0,0,0,0,0,0,0.250237039743928,0,0,0.30648779579902,0.600952235626387,0.226864366320042,0,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0.18611685633159,0.337552664482532,0.389748020644795,0.252433774244115,0.0920498986422993,0,0.710019185033229,0.10075209822764,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,1.5644953232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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=382 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=659 | |||
|TSSclassifier=S | |||
|UniProt=P62330 | |||
|association_with_transcript=-474bp_to_AF047432_5end | |||
|description=CAGE_peak_13_at_ARF6_5end | |||
|id=chr14:50359906..50359913,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.34e-20!45;CL:0002057!4.02e-20!42;CL:0002009!1.44e-15!65;CL:0000557!2.02e-15!71;CL:0002194!2.51e-14!63;CL:0000576!2.51e-14!63;CL:0000040!2.51e-14!63;CL:0000559!2.51e-14!63;CL:0000766!1.19e-13!76;CL:0000839!1.08e-12!70;CL:0000738!2.18e-10!140;CL:0000063!1.00e-09!578;CL:0002087!5.16e-09!119;CL:0000763!1.48e-08!112;CL:0000049!1.48e-08!112;CL:0002031!3.55e-08!124;CL:0000134!4.15e-08!358;CL:0002320!7.01e-08!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.95e-16;33!CL:0002057;5.95e-16;33!CL:0000473;1.65e-12;39!CL:0000234;1.65e-12;39!CL:0000576;5.92e-11;48!CL:0000346;3.16e-10;3!CL:1000428;3.16e-10;3!CL:0000766;6.43e-09;69!CL:0002393;9.93e-09;6!CL:0002397;9.93e-09;6!CL:0001014;8.48e-08;2!CL:0001016;8.48e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.79e-21,42;CL:0002057,6.79e-21,42;CL:0000473,5.63e-20,48;CL:0000234,5.63e-20,48;CL:0002009,3.69e-18,61;CL:0000557,7.44e-18,67;CL:0002194,5.21e-15,59;CL:0000576,5.21e-15,59;CL:0000040,5.21e-15,59;CL:0000559,5.21e-15,59;CL:0000766,1.27e-14,72;CL:0000839,6.03e-13,66;CL:0000763,2.30e-11,108;CL:0000049,2.30e-11,108;CL:0000738,1.01e-10,136;CL:0002031,1.19e-10,120;CL:0000346,1.26e-10,3;CL:1000428,1.26e-10,3;CL:0002087,3.69e-09,115;CL:0002032,6.56e-09,161;CL:0000837,6.56e-09,161;CL:0000037,2.86e-08,168;CL:0000988,3.01e-08,177;CL:0001014,5.00e-08,2;CL:0001016,5.00e-08,2 | |||
|ontology_enrichment_development_v019=CL:0002057;4.16e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!4.97e-17!80;UBERON:0001474!9.78e-16!86;UBERON:0004765!2.53e-14!101;UBERON:0001434!2.53e-14!101;UBERON:0002390!7.86e-13!102;UBERON:0003061!7.86e-13!102;UBERON:0002193!1.01e-10!112;UBERON:0002405!7.20e-10!115;UBERON:0002384!3.65e-08!375;UBERON:0002204!4.66e-08!167;UBERON:0000926!9.15e-08!448;UBERON:0004120!9.15e-08!448;UBERON:0006603!9.15e-08!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;3.16e-10;3!UBERON:0001992;3.16e-10;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.75e-18,76;UBERON:0001474,1.07e-16,82;UBERON:0002405,2.26e-15,93;UBERON:0004765,1.09e-14,90;UBERON:0002390,1.99e-14,98;UBERON:0003061,1.99e-14,98;UBERON:0002193,1.03e-13,108;UBERON:0001434,1.23e-12,100;UBERON:0000412,1.26e-10,3;UBERON:0001992,1.26e-10,3;UBERON:0002204,4.13e-09,167;UBERON:0003081,1.17e-07,203 | |||
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| |||
|short_description=p13@ARF6 | |||
}} |
Revision as of 04:37, 11 September 2013
Short description: | p13@ARF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_ARF6_5end |
Coexpression cluster: | NA |
Association with transcript: | -474bp_to_AF047432_5end |
EntrezGene: | ARF6 |
HGNC: | 659 |
UniProt: | P62330 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.79e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.79e-21 | 42 |
defensive cell | 5.63e-20 | 48 |
phagocyte | 5.63e-20 | 48 |
macrophage dendritic cell progenitor | 3.69e-18 | 61 |
granulocyte monocyte progenitor cell | 7.44e-18 | 67 |
monopoietic cell | 5.21e-15 | 59 |
monocyte | 5.21e-15 | 59 |
monoblast | 5.21e-15 | 59 |
promonocyte | 5.21e-15 | 59 |
myeloid leukocyte | 1.27e-14 | 72 |
myeloid lineage restricted progenitor cell | 6.03e-13 | 66 |
myeloid cell | 2.30e-11 | 108 |
common myeloid progenitor | 2.30e-11 | 108 |
leukocyte | 1.01e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 1.19e-10 | 120 |
hair follicle dermal papilla cell | 1.26e-10 | 3 |
stem cell of epidermis | 1.26e-10 | 3 |
nongranular leukocyte | 3.69e-09 | 115 |
hematopoietic oligopotent progenitor cell | 6.56e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.56e-09 | 161 |
hematopoietic stem cell | 2.86e-08 | 168 |
hematopoietic cell | 3.01e-08 | 177 |
CD1a-positive Langerhans cell | 5.00e-08 | 2 |
immature CD1a-positive Langerhans cell | 5.00e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.75e-18 | 76 |
bone element | 1.07e-16 | 82 |
immune system | 2.26e-15 | 93 |
skeletal element | 1.09e-14 | 90 |
hematopoietic system | 1.99e-14 | 98 |
blood island | 1.99e-14 | 98 |
hemolymphoid system | 1.03e-13 | 108 |
skeletal system | 1.23e-12 | 100 |
dermal papilla | 1.26e-10 | 3 |
papillary layer of dermis | 1.26e-10 | 3 |
musculoskeletal system | 4.13e-09 | 167 |
lateral plate mesoderm | 1.17e-07 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.