FFCP PHASE1:Hg19::chr16:11650476..11650513,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9516|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16841|TSSclassifier=S|UniProt=|association_with_transcript=72bp_to_EU446689,EU831762,EU831840_5end|coexpression_cluster_id=C107|description=CAGE_peak_7_at_LITAF_5end|id=chr16:11650476..11650513,-|ontology_enrichment_celltype=CL:0000766!1.15e-24!76;CL:0000557!3.62e-21!71;CL:0002009!3.80e-21!65;CL:0002194!1.85e-20!63;CL:0000576!1.85e-20!63;CL:0000040!1.85e-20!63;CL:0000559!1.85e-20!63;CL:0000839!3.62e-20!70;CL:0002057!9.65e-20!42;CL:0000738!5.15e-19!140;CL:0000860!1.90e-18!45;CL:0002031!2.16e-17!124;CL:0002087!3.37e-16!119;CL:0000763!1.01e-11!112;CL:0000049!1.01e-11!112;CL:0002032!2.40e-11!165;CL:0000837!2.40e-11!165;CL:0000037!2.80e-10!172;CL:0000566!2.80e-10!172;CL:0000988!3.28e-09!182|ontology_enrichment_celltype_v019=CL:0000860;2.49e-34;33!CL:0002057;2.49e-34;33!CL:0000473;5.58e-31;39!CL:0000234;5.58e-31;39!CL:0000576;2.62e-20;48!CL:0000766;7.72e-17;69!CL:0000763;9.91e-09;100!CL:0002087;2.38e-07;104!CL:0000738;8.10e-07;136|ontology_enrichment_celltype_v019_2=CL:0000766,7.81e-38,72;CL:0000473,5.61e-34,48;CL:0000234,5.61e-34,48;CL:0000557,2.96e-32,67;CL:0002009,5.26e-32,61;CL:0002194,8.00e-32,59;CL:0000576,8.00e-32,59;CL:0000040,8.00e-32,59;CL:0000559,8.00e-32,59;CL:0000839,2.75e-31,66;CL:0000860,2.91e-30,42;CL:0002057,2.91e-30,42;CL:0000738,9.06e-24,136;CL:0000763,6.28e-21,108;CL:0000049,6.28e-21,108;CL:0002031,1.68e-20,120;CL:0002087,3.98e-20,115;CL:0002032,6.76e-16,161;CL:0000837,6.76e-16,161;CL:0000037,8.45e-16,168;CL:0000988,1.60e-14,177|ontology_enrichment_development_v019=CL:0002057;1.79e-22;42!CL:0000049;2.09e-07;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!1.17e-20!102;UBERON:0003061!1.17e-20!102;UBERON:0002193!1.17e-17!112;UBERON:0002371!5.92e-17!80;UBERON:0001474!2.45e-15!86;UBERON:0004765!4.97e-13!101;UBERON:0001434!4.97e-13!101;UBERON:0002405!1.27e-12!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.26e-29,98;UBERON:0003061,5.26e-29,98;UBERON:0002371,2.25e-26,76;UBERON:0002193,1.54e-25,108;UBERON:0001474,3.32e-24,82;UBERON:0004765,1.71e-21,90;UBERON:0002405,2.24e-20,93;UBERON:0001434,9.89e-19,100;UBERON:0003081,4.62e-09,203|phase1_expression=0.181678379270557,0.856402095563933,0.140954404095971,0,0.446961094427288,2.61701557230111,0,0,0,0,0,0,0,0.247532705920093,0.331397375727916,0,0,0,0,0.369363174230364,0.204000691244253,0,0.286235987131057,0.136874425072884,0.251085279189606,0.916960868975415,0.738905305049512,0.629686250509434,1.96682138424452,0.767658796194425,0.154816123316076,0,0.90361775633475,2.21852406100073,0.0774672005803016,0,0,0.553995408531877,3.20871115952227,0.217010870715852,3.80656306207871,1.6194683300949,2.31818010870768,10.3232749533491,6.42389104270976,4.60909716256851,15.3403164357752,19.3248907370258,9.91060386864331,17.261543539329,16.3942852178624,8.0403958162119,6.55016793399575,10.973239620925,6.77132432971709,14.8711448238658,22.6512104548012,3.82029923556644,13.4676912643197,12.5162320559677,12.1474053901818,12.8642007072819,18.5501201588118,9.37694451171927,7.54544020434318,10.7803192691317,9.9651559839292,16.0799145764316,12.5155900420848,8.47036494349955,10.2917915447673,8.47038562771399,7.27863491114034,2.32380814943136,0.850417199860174,0.419317291016752,1.01095768031846,1.05123824989054,0.48217676009124,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,1.32171328579026,1.68152568894461,0,0.393419540227666,3.14408610199332,2.67281948699362,0.501559486172034,0.977766799900771,0.473447805734733,1.94826728407911,1.22551502573691,1.17842362989935,1.10766947291811,0.812411591295047,1.15282187753108,0.130059347559878,0.328875809207352,0.829050053357545,0.289803085735052,1.03800594213442,0.535081656179426,1.04535523804977,0.566546713487831,0.383220493601921,1.03088233644789,1.26509846009751,0.318565414324097,0.651083453856419,0.950452044448374,0.602300476311091,0.639933055772092,1.24930726552346,1.65744076430812,1.64225599384209,1.00803371612366,3.4767225451856,0.724122019413995,0,0.670700859703636,0.255725123687061,0,0,0.144846518960824,0,1.45990461090791,0.189069634328136,0,0.087834785693126,0.654895377488563,0.728590576585084,1.11235332835329,0.97364218096405,1.0447784237956,2.52620124985844,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0.17859945656816,0.44905874525234,0.112611480483322,0,0,0,6.58902087180316,19.3890132074163,0.872188104285069,0.496971951695318,0,0,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0.311211035399766,0.538842688278752,0.163461903113459,0.151357427644931,1.72852777344,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0.309977343527296,4.75201142912821,3.70900393917835,1.82032272387605,0,0.168336113954066,0.7507111192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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9516 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16841 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=72bp_to_EU446689,EU831762,EU831840_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_7_at_LITAF_5end | |||
|id=chr16:11650476..11650513,- | |||
|ontology_enrichment_celltype=CL:0000766!1.15e-24!76;CL:0000557!3.62e-21!71;CL:0002009!3.80e-21!65;CL:0002194!1.85e-20!63;CL:0000576!1.85e-20!63;CL:0000040!1.85e-20!63;CL:0000559!1.85e-20!63;CL:0000839!3.62e-20!70;CL:0002057!9.65e-20!42;CL:0000738!5.15e-19!140;CL:0000860!1.90e-18!45;CL:0002031!2.16e-17!124;CL:0002087!3.37e-16!119;CL:0000763!1.01e-11!112;CL:0000049!1.01e-11!112;CL:0002032!2.40e-11!165;CL:0000837!2.40e-11!165;CL:0000037!2.80e-10!172;CL:0000566!2.80e-10!172;CL:0000988!3.28e-09!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.49e-34;33!CL:0002057;2.49e-34;33!CL:0000473;5.58e-31;39!CL:0000234;5.58e-31;39!CL:0000576;2.62e-20;48!CL:0000766;7.72e-17;69!CL:0000763;9.91e-09;100!CL:0002087;2.38e-07;104!CL:0000738;8.10e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,7.81e-38,72;CL:0000473,5.61e-34,48;CL:0000234,5.61e-34,48;CL:0000557,2.96e-32,67;CL:0002009,5.26e-32,61;CL:0002194,8.00e-32,59;CL:0000576,8.00e-32,59;CL:0000040,8.00e-32,59;CL:0000559,8.00e-32,59;CL:0000839,2.75e-31,66;CL:0000860,2.91e-30,42;CL:0002057,2.91e-30,42;CL:0000738,9.06e-24,136;CL:0000763,6.28e-21,108;CL:0000049,6.28e-21,108;CL:0002031,1.68e-20,120;CL:0002087,3.98e-20,115;CL:0002032,6.76e-16,161;CL:0000837,6.76e-16,161;CL:0000037,8.45e-16,168;CL:0000988,1.60e-14,177 | |||
|ontology_enrichment_development_v019=CL:0002057;1.79e-22;42!CL:0000049;2.09e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.17e-20!102;UBERON:0003061!1.17e-20!102;UBERON:0002193!1.17e-17!112;UBERON:0002371!5.92e-17!80;UBERON:0001474!2.45e-15!86;UBERON:0004765!4.97e-13!101;UBERON:0001434!4.97e-13!101;UBERON:0002405!1.27e-12!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.26e-29,98;UBERON:0003061,5.26e-29,98;UBERON:0002371,2.25e-26,76;UBERON:0002193,1.54e-25,108;UBERON:0001474,3.32e-24,82;UBERON:0004765,1.71e-21,90;UBERON:0002405,2.24e-20,93;UBERON:0001434,9.89e-19,100;UBERON:0003081,4.62e-09,203 | |||
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| |||
|short_description=p7@LITAF | |||
}} |
Revision as of 09:13, 11 September 2013
Short description: | p7@LITAF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_LITAF_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | 72bp_to_EU446689, EU831762, EU831840_5end |
EntrezGene: | LITAF |
HGNC: | 16841 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 7.81e-38 | 72 |
defensive cell | 5.61e-34 | 48 |
phagocyte | 5.61e-34 | 48 |
granulocyte monocyte progenitor cell | 2.96e-32 | 67 |
macrophage dendritic cell progenitor | 5.26e-32 | 61 |
monopoietic cell | 8.00e-32 | 59 |
monocyte | 8.00e-32 | 59 |
monoblast | 8.00e-32 | 59 |
promonocyte | 8.00e-32 | 59 |
myeloid lineage restricted progenitor cell | 2.75e-31 | 66 |
classical monocyte | 2.91e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.91e-30 | 42 |
leukocyte | 9.06e-24 | 136 |
myeloid cell | 6.28e-21 | 108 |
common myeloid progenitor | 6.28e-21 | 108 |
hematopoietic lineage restricted progenitor cell | 1.68e-20 | 120 |
nongranular leukocyte | 3.98e-20 | 115 |
hematopoietic oligopotent progenitor cell | 6.76e-16 | 161 |
hematopoietic multipotent progenitor cell | 6.76e-16 | 161 |
hematopoietic stem cell | 8.45e-16 | 168 |
hematopoietic cell | 1.60e-14 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.26e-29 | 98 |
blood island | 5.26e-29 | 98 |
bone marrow | 2.25e-26 | 76 |
hemolymphoid system | 1.54e-25 | 108 |
bone element | 3.32e-24 | 82 |
skeletal element | 1.71e-21 | 90 |
immune system | 2.24e-20 | 93 |
skeletal system | 9.89e-19 | 100 |
lateral plate mesoderm | 4.62e-09 | 203 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.