FFCP PHASE1:Hg19::chr17:59477197..59477212,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6909|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11597|TSSclassifier=S|UniProt=Q13207|association_with_transcript=-44bp_to_ENST00000240328,ENST00000424871,NM_005994,uc002ize.2,uc002izg.2,uc010wox.1_5end|coexpression_cluster_id=C2425|description=CAGE_peak_2_at_TBX2_5end|id=chr17:59477197..59477212,+|ontology_enrichment_celltype=CL:0000055!3.38e-22!180;CL:0000183!4.80e-11!59;CL:0000057!1.38e-10!75;CL:0000187!2.54e-10!54;CL:0000680!2.83e-10!57;CL:0000056!2.83e-10!57;CL:0000355!2.83e-10!57;CL:0000192!5.63e-09!42;CL:0000514!5.63e-09!42;CL:0000393!1.09e-07!60;CL:0000211!1.09e-07!60|ontology_enrichment_celltype_v019=CL:0000192;1.67e-07;43!CL:0000187;6.73e-07;55|ontology_enrichment_celltype_v019_2=CL:0000187,3.30e-11,55;CL:0000680,5.21e-11,58;CL:0000056,5.21e-11,58;CL:0000355,5.21e-11,58;CL:0000192,6.92e-10,43;CL:0000514,6.92e-10,43;CL:0000393,1.41e-08,61;CL:0000211,1.41e-08,61;CL:0000057,1.97e-08,76|ontology_enrichment_development_v019=CL:0000514;1.67e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!1.57e-22!347;UBERON:0000475!5.37e-21!365;UBERON:0002100!1.93e-15!216;UBERON:0005256!7.13e-15!143;UBERON:0003104!3.55e-14!238;UBERON:0009142!3.55e-14!238;UBERON:0000914!1.39e-13!83;UBERON:0002329!1.39e-13!83;UBERON:0003077!1.39e-13!83;UBERON:0003059!1.39e-13!83;UBERON:0007282!1.39e-13!83;UBERON:0009618!1.39e-13!83;UBERON:0007285!1.39e-13!83;UBERON:0004290!1.09e-11!70;UBERON:0002385!3.21e-11!63;UBERON:0001015!3.21e-11!63;UBERON:0000383!3.21e-11!63;UBERON:0001134!1.40e-10!61;UBERON:0002036!1.40e-10!61;UBERON:0003082!1.40e-10!61;UBERON:0000119!2.74e-10!312;UBERON:0000483!4.95e-10!309;UBERON:0000468!1.95e-09!659;UBERON:0000486!8.47e-09!82;UBERON:0007023!3.68e-08!115;UBERON:0000477!1.05e-07!286|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.37e-17,160;UBERON:0009142,1.37e-17,160;UBERON:0005256,4.17e-14,122;UBERON:0007524,3.21e-13,73;UBERON:0002329,6.48e-13,71;UBERON:0003059,6.48e-13,71;UBERON:0007282,6.48e-13,71;UBERON:0004290,6.48e-13,71;UBERON:0009618,6.48e-13,71;UBERON:0003077,6.96e-13,72;UBERON:0007285,6.96e-13,72;UBERON:0002100,1.11e-12,199;UBERON:0002385,4.35e-12,64;UBERON:0001015,4.35e-12,64;UBERON:0000383,4.35e-12,64;UBERON:0007503,6.32e-12,78;UBERON:0001134,2.27e-11,62;UBERON:0002036,2.27e-11,62;UBERON:0003082,2.27e-11,62;UBERON:0000486,1.02e-08,83;UBERON:0000490,6.97e-08,148;UBERON:0000119,2.77e-07,309;UBERON:0000483,4.73e-07,306|phase1_expression=1.63510541343501,2.35510576280081,2.25527046553554,0,1.34088328328186,2.61701557230111,0,1.89515962028049,1.82829939739887,6.38908234903923,6.97801167972428,0,0,1.36142988256051,2.31978163009541,0.672325146451775,0,0,0.975865597581014,0.738726348460727,0.204000691244253,0.626909442956176,0.286235987131057,0.547497700291537,1.38096903554283,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,1.66221330396589,3.97583067623023,7.52006865953834,8.40109809972778,0.795285947051099,2.91980922181582,4.44313640671119,4.87804674417641,4.65524364173568,11.0022423418079,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,0.264818361626438,4.87622255272983,2.83734705758686,1.12135520028461,4.2699598291882,0.98667019366864,2.48968828319813,1.75123873690594,0.980771418680752,3.17850598054356,5.18558332031999,2.57753575017176,8.11616199758833,5.13424639390004,7.47243402759005,2.23125547423153,3.56120477609889,3.93262258766296,4.49139176760765,11.5464258273062,4.44300859055791,21.384051431077,19.2868204837274,1.82032272387605,6.46756327634615,8.92181403956551,11.8862593878366,1.93944880838928,7.46261955497424,4.59731693698529,21.7845185414565,0.567160915800105,2.51145489964407,0.213557388818567,1.69545520927649,1.50045548042201,0.721367704669072,3.09168648054755,1.67505170698431,2.02531598689519,0.584622030967192,2.27190396819703,0.920498986422993,1.2931684545505,2.84007674013291,1.0075209822764,3.89989362314122,0,0,0,0,0,0.929551542956147,1.34759371519982,0,0,0,0,5.52539685409922,2.78620756819187,1.44375896333917,0.236613600079688,0.168584690078102,0.241011029883482,0.220587945464788,0.435758888184812,0.237270619111097,0.134831308160164,0.196221465125346,0.769494313892781,0.738155454624648,5.60967095213783,2.4694440679884,5.88034845542168,0,0,6.49868897349544,0,0.983907508344908,3.25978839567199,0,0,0.100528972411631,0.0925884451585296,3.58389135841357,23.9185000614303,2.88662684050547,17.2736303412864,1.76113041353732,0,0,0,60.0555342449049,59.2355451845462,0,0,0,0.93733833986777,0.503946384596579,0,0.268675568108545,0,0,0,0,0,0,0,4.06386523469882,19.0994212779139,19.926966025708,10.2643467613623,16.349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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11597 | |||
|TSSclassifier=S | |||
|UniProt=Q13207 | |||
|association_with_transcript=-44bp_to_ENST00000240328,ENST00000424871,NM_005994,uc002ize.2,uc002izg.2,uc010wox.1_5end | |||
|coexpression_cluster_id=C2425 | |||
|description=CAGE_peak_2_at_TBX2_5end | |||
|id=chr17:59477197..59477212,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.38e-22!180;CL:0000183!4.80e-11!59;CL:0000057!1.38e-10!75;CL:0000187!2.54e-10!54;CL:0000680!2.83e-10!57;CL:0000056!2.83e-10!57;CL:0000355!2.83e-10!57;CL:0000192!5.63e-09!42;CL:0000514!5.63e-09!42;CL:0000393!1.09e-07!60;CL:0000211!1.09e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.67e-07;43!CL:0000187;6.73e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,3.30e-11,55;CL:0000680,5.21e-11,58;CL:0000056,5.21e-11,58;CL:0000355,5.21e-11,58;CL:0000192,6.92e-10,43;CL:0000514,6.92e-10,43;CL:0000393,1.41e-08,61;CL:0000211,1.41e-08,61;CL:0000057,1.97e-08,76 | |||
|ontology_enrichment_development_v019=CL:0000514;1.67e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.57e-22!347;UBERON:0000475!5.37e-21!365;UBERON:0002100!1.93e-15!216;UBERON:0005256!7.13e-15!143;UBERON:0003104!3.55e-14!238;UBERON:0009142!3.55e-14!238;UBERON:0000914!1.39e-13!83;UBERON:0002329!1.39e-13!83;UBERON:0003077!1.39e-13!83;UBERON:0003059!1.39e-13!83;UBERON:0007282!1.39e-13!83;UBERON:0009618!1.39e-13!83;UBERON:0007285!1.39e-13!83;UBERON:0004290!1.09e-11!70;UBERON:0002385!3.21e-11!63;UBERON:0001015!3.21e-11!63;UBERON:0000383!3.21e-11!63;UBERON:0001134!1.40e-10!61;UBERON:0002036!1.40e-10!61;UBERON:0003082!1.40e-10!61;UBERON:0000119!2.74e-10!312;UBERON:0000483!4.95e-10!309;UBERON:0000468!1.95e-09!659;UBERON:0000486!8.47e-09!82;UBERON:0007023!3.68e-08!115;UBERON:0000477!1.05e-07!286 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,1.37e-17,160;UBERON:0009142,1.37e-17,160;UBERON:0005256,4.17e-14,122;UBERON:0007524,3.21e-13,73;UBERON:0002329,6.48e-13,71;UBERON:0003059,6.48e-13,71;UBERON:0007282,6.48e-13,71;UBERON:0004290,6.48e-13,71;UBERON:0009618,6.48e-13,71;UBERON:0003077,6.96e-13,72;UBERON:0007285,6.96e-13,72;UBERON:0002100,1.11e-12,199;UBERON:0002385,4.35e-12,64;UBERON:0001015,4.35e-12,64;UBERON:0000383,4.35e-12,64;UBERON:0007503,6.32e-12,78;UBERON:0001134,2.27e-11,62;UBERON:0002036,2.27e-11,62;UBERON:0003082,2.27e-11,62;UBERON:0000486,1.02e-08,83;UBERON:0000490,6.97e-08,148;UBERON:0000119,2.77e-07,309;UBERON:0000483,4.73e-07,306 | |||
|phase1_expression=1.63510541343501,2.35510576280081,2.25527046553554,0,1.34088328328186,2.61701557230111,0,1.89515962028049,1.82829939739887,6.38908234903923,6.97801167972428,0,0,1.36142988256051,2.31978163009541,0.672325146451775,0,0,0.975865597581014,0.738726348460727,0.204000691244253,0.626909442956176,0.286235987131057,0.547497700291537,1.38096903554283,0,0,0,0,0,0.928896739896456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,1.66221330396589,3.97583067623023,7.52006865953834,8.40109809972778,0.795285947051099,2.91980922181582,4.44313640671119,4.87804674417641,4.65524364173568,11.0022423418079,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0.993943903390637,1.13967460498122,0.264818361626438,4.87622255272983,2.83734705758686,1.12135520028461,4.2699598291882,0.98667019366864,2.48968828319813,1.75123873690594,0.980771418680752,3.17850598054356,5.18558332031999,2.57753575017176,8.11616199758833,5.13424639390004,7.47243402759005,2.23125547423153,3.56120477609889,3.93262258766296,4.49139176760765,11.5464258273062,4.44300859055791,21.384051431077,19.2868204837274,1.82032272387605,6.46756327634615,8.92181403956551,11.8862593878366,1.93944880838928,7.46261955497424,4.59731693698529,21.7845185414565,0.567160915800105,2.51145489964407,0.213557388818567,1.69545520927649,1.50045548042201,0.721367704669072,3.09168648054755,1.67505170698431,2.02531598689519,0.584622030967192,2.27190396819703,0.920498986422993,1.2931684545505,2.84007674013291,1.0075209822764,3.89989362314122,0,0,0,0,0,0.929551542956147,1.34759371519982,0,0,0,0,5.52539685409922,2.78620756819187,1.44375896333917,0.236613600079688,0.168584690078102,0.241011029883482,0.220587945464788,0.435758888184812,0.237270619111097,0.134831308160164,0.196221465125346,0.769494313892781,0.738155454624648,5.60967095213783,2.4694440679884,5.88034845542168,0,0,6.49868897349544,0,0.983907508344908,3.25978839567199,0,0,0.100528972411631,0.0925884451585296,3.58389135841357,23.9185000614303,2.88662684050547,17.2736303412864,1.76113041353732,0,0,0,60.0555342449049,59.2355451845462,0,0,0,0.93733833986777,0.503946384596579,0,0.268675568108545,0,0,0,0,0,0,0,4.06386523469882,19.0994212779139,19.926966025708,10.2643467613623,16.3495713398284,14.1161237186641,14.5771480641595,1.90622843387113,1.30788020649984,1.7601188597028,2.19761916788222,14.3062578340753,10.143633030672,5.05282421511254,6.24044621468197,13.3747834616314,8.5109479213967,12.5218424137567,13.2969534102077,9.22456729165453,6.58592269424615,9.77208552881205,11.727934308504,4.75171123760058,0.301439377059586,0,0.399891964728228,0,0,0,1.4377491329495,2.29723871668228,1.42636905040718,0.144781306667579,3.08214483825575,1.61154866915906,0,0,0,0,2.54094624222463,0,0.773288812777695,0,0,0,0,0,3.31267027641678,3.00102312635806,3.7977103317963,1.87173775377726,1.96271887676878,1.57702415033935,3.86566669475954,3.31040709700491,4.5481500811197,5.17365356462525,2.65690239414175,4.05612170791747,8.94901229021253,18.2095076440349,15.7845974952994,0,0,0,0,1.66435439510497,0.604780586659361,0.248107807818777,0.61384789315225,2.24528075546459,0.512556597022804,1.02341449813341,1.60853921143608,1.48418066444991,6.47680713971153,3.55123450626254,5.91315523299426,6.23105315020345,6.15915005837784,1.57117284469109,0,0,4.59257792658427,12.3821994244568,8.52308697236257,0.902399225814824,1.15523005656622,1.56869953835371,0,0.105551628892876,0,0,0,0,1.62567862526312,3.51182841698397,1.01950509218015,2.49322802678617,0.223874754722178,0,0,0.512900250232778,0.328014645699706,0,13.1892494909085,3.84591752237042,3.30037999682352,1.72279661398852,0,6.42735719376638,4.15684088656124,5.85384745035649,2.6095624703442,5.51346289938122,2.36324538710202,3.0453505721988,5.79541066429486,0.801288320820636,0,0,0.255225424989168,0.10115778085555,2.32422774648643,2.51849877464512,4.8792608911242,1.54016790088044,1.59691809095107,5.21959795245044,2.03856641014312,1.00187420719394,0.744316738719335,2.53103539774981,2.85945290885737,25.8456769224447,15.4058035692211,4.77304871888905,4.70969184119538,6.47540847299933,3.56898138656871,6.36186972666707,1.81964233415984,3.17020642346017,2.94880919367287,11.2155759990606,4.38684281336312,0,5.05049672209547,4.24216295861138,6.78048699721457,2.75682671773062,2.65375590096488,3.06915619677634,8.10285747973363,19.676842561399,2.63783490051515,5.26699946769575,7.88747687090276,7.45739031461068,4.22470876356421,2.85336841185,12.7713983065415,0.844430541190656,0.987884678879706,10.2457756916743,24.1454956969038,0,0.670302275535787,0,13.650851112633,1.72202149068492,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0,0,2.45695363593188,0.962479855263359,0,0,1.298422916788,0,0,0,0,0,0,0,0,0,0,0.677167111206413,0,0,0,0,0.614481528616916,0.447352215784832,0.834245708559542,0,0,0,0,0,0,0,4.395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| |||
|short_description=p2@TBX2 | |||
}} |
Revision as of 14:55, 11 September 2013
Short description: | p2@TBX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TBX2_5end |
Coexpression cluster: | C2425_MCF7_Melanocyte_normal_Fibroblast_rhabdomyosarcoma_Smooth_lung |
Association with transcript: | -44bp_to_ENST00000240328, ENST00000424871, NM_005994, uc002ize.2, uc002izg.2, uc010wox.1_5end |
EntrezGene: | TBX2 |
HGNC: | 11597 |
UniProt: | Q13207 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 3.30e-11 | 55 |
muscle precursor cell | 5.21e-11 | 58 |
myoblast | 5.21e-11 | 58 |
multi-potent skeletal muscle stem cell | 5.21e-11 | 58 |
smooth muscle cell | 6.92e-10 | 43 |
smooth muscle myoblast | 6.92e-10 | 43 |
electrically responsive cell | 1.41e-08 | 61 |
electrically active cell | 1.41e-08 | 61 |
fibroblast | 1.97e-08 | 76 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 1.37e-17 | 160 |
entire embryonic mesenchyme | 1.37e-17 | 160 |
trunk mesenchyme | 4.17e-14 | 122 |
dense mesenchyme tissue | 3.21e-13 | 73 |
somite | 6.48e-13 | 71 |
presomitic mesoderm | 6.48e-13 | 71 |
presumptive segmental plate | 6.48e-13 | 71 |
dermomyotome | 6.48e-13 | 71 |
trunk paraxial mesoderm | 6.48e-13 | 71 |
paraxial mesoderm | 6.96e-13 | 72 |
presumptive paraxial mesoderm | 6.96e-13 | 72 |
trunk | 1.11e-12 | 199 |
muscle tissue | 4.35e-12 | 64 |
musculature | 4.35e-12 | 64 |
musculature of body | 4.35e-12 | 64 |
epithelial vesicle | 6.32e-12 | 78 |
skeletal muscle tissue | 2.27e-11 | 62 |
striated muscle tissue | 2.27e-11 | 62 |
myotome | 2.27e-11 | 62 |
multilaminar epithelium | 1.02e-08 | 83 |
unilaminar epithelium | 6.97e-08 | 148 |
cell layer | 2.77e-07 | 309 |
epithelium | 4.73e-07 | 306 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.