FFCP PHASE1:Hg19::chr19:1180760..1180775,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C120|description=CAGE_peak_at_chr19:1180760..1180775,+|id=chr19:1180760..1180775,+|ontology_enrichment_celltype=CL:0002009!1.75e-21!65;CL:0000860!3.09e-21!45;CL:0000766!5.79e-21!76;CL:0002057!4.21e-20!42;CL:0002194!8.26e-20!63;CL:0000576!8.26e-20!63;CL:0000040!8.26e-20!63;CL:0000559!8.26e-20!63;CL:0000557!3.51e-19!71;CL:0000839!4.09e-17!70;CL:0000763!5.26e-14!112;CL:0000049!5.26e-14!112;CL:0000066!3.81e-10!254;CL:0000738!3.22e-08!140;CL:0002368!2.26e-07!13;CL:0000063!3.18e-07!578|ontology_enrichment_celltype_v019=CL:0000860;8.18e-63;33!CL:0002057;8.18e-63;33!CL:0000473;9.99e-45;39!CL:0000234;9.99e-45;39!CL:0000576;7.61e-30;48!CL:0000766;2.00e-18;69!CL:0000453;4.16e-12;5!CL:0000775;6.82e-12;3!CL:0000763;1.57e-10;100!CL:0001014;5.65e-09;2!CL:0001016;5.65e-09;2!CL:0000738;1.15e-07;136!CL:0000094;2.01e-07;8|ontology_enrichment_celltype_v019_2=CL:0000860,8.21e-53,42;CL:0002057,8.21e-53,42;CL:0000473,6.02e-49,48;CL:0000234,6.02e-49,48;CL:0002009,9.90e-43,61;CL:0000766,1.65e-40,72;CL:0000557,2.80e-38,67;CL:0002194,1.04e-37,59;CL:0000576,1.04e-37,59;CL:0000040,1.04e-37,59;CL:0000559,1.04e-37,59;CL:0000839,5.12e-33,66;CL:0000763,1.34e-32,108;CL:0000049,1.34e-32,108;CL:0000738,4.08e-24,136;CL:0002032,4.89e-19,161;CL:0000837,4.89e-19,161;CL:0002031,3.41e-18,120;CL:0000037,6.91e-18,168;CL:0000988,1.52e-16,177;CL:0002087,4.20e-16,115;CL:0000453,4.30e-12,5;CL:0000775,4.84e-12,3;CL:0001014,5.67e-09,2;CL:0001016,5.67e-09,2;CL:0000094,1.69e-07,8|ontology_enrichment_development_v019=CL:0002057;1.95e-39;42!CL:0000049;2.70e-10;108|ontology_enrichment_disease=DOID:305!2.64e-08!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.86e-18!102;UBERON:0003061!3.86e-18!102;UBERON:0002193!1.05e-17!112;UBERON:0002371!1.23e-16!80;UBERON:0001474!6.27e-16!86;UBERON:0004765!3.36e-14!101;UBERON:0001434!3.36e-14!101;UBERON:0002405!2.47e-11!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.63e-33,76;UBERON:0001474,5.68e-30,82;UBERON:0002390,9.79e-30,98;UBERON:0003061,9.79e-30,98;UBERON:0004765,1.15e-26,90;UBERON:0002193,3.00e-26,108;UBERON:0002405,1.42e-25,93;UBERON:0001434,2.81e-23,100;UBERON:0002204,4.69e-12,167;UBERON:0003081,3.08e-11,203;UBERON:0000926,9.33e-07,315;UBERON:0004120,9.33e-07,315;UBERON:0006603,9.33e-07,315|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0.0821005894499457,0,0.786728553697808,0,0.154816123316076,0.919421224478927,1.204823675113,1.10926203050036,0,0,0,0,0.401088894940283,0.434021741431704,0.447830948479849,0.647787332037959,0,4.36194716338694,4.1566353805769,5.82201746850759,3.71886459049095,1.23350366406548,1.85823822537062,4.31538588483226,3.58624989140741,4.02019790810595,0.344745680736619,0,0,2.63539275359647,3.547779950752,2.9214052977861,1.53041946185451,0.962787081228281,2.55734850319616,4.94776950280074,3.59034583718937,2.98357325372886,3.48251086354301,2.26954089876456,4.35975574296902,3.26623264833766,3.65038042894141,1.73751075764093,6.05399502633369,4.05105399586321,3.16462387440884,0,0,0,0.561643155732475,0.450530678524519,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.261958150995425,0.728590576585084,0.370784442784429,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0.760272105718513,0.24406205754817,0,0,0,0.22452937262617,0,0,0,0,1.31780417436063,0,0.436094052142534,0,0,0.264818361626438,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0.122834317311768,0,0,0,0,0,0,0,0.277064115484183,0.438977620880838,0,0.150238058906597,0,0,0,0.211931901159562,0,0.206105058476878,0,0,0,0,0.252433774244115,0.184099797284599,0,0,0,0,0.57978255948989,0.272746120590835,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0.237270619111097,0.269662616320329,0,0.38474715694639,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0.201057944823262,0,0.325808305310325,0,0,0,0,0.721832238805369,0.462985512576611,0.190254152234598,0,0.858486162094873,0.492434012174795,0.234004265139238,0.594524649154913,0,0,0.425325291727159,0,0,0,0,0,0,0,0.50496973370552,0,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,1.2162378064119,0,0,0,0,0,0,0,0.358121926479791,0,0,0,0,0,0,0,0,0,5.99205619157746,2.99161459204025,3.72973962092432,0,0,0,0,0.178428988797162,0.315404830067869,0.468565659970853,0,0,0,0,0,0.0868836144680828,0,0,0,0.647142602455851,0.320182673410333,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,2.35304930753057,0,0.105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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_at_chr19:1180760..1180775,+ | |||
|id=chr19:1180760..1180775,+ | |||
|ontology_enrichment_celltype=CL:0002009!1.75e-21!65;CL:0000860!3.09e-21!45;CL:0000766!5.79e-21!76;CL:0002057!4.21e-20!42;CL:0002194!8.26e-20!63;CL:0000576!8.26e-20!63;CL:0000040!8.26e-20!63;CL:0000559!8.26e-20!63;CL:0000557!3.51e-19!71;CL:0000839!4.09e-17!70;CL:0000763!5.26e-14!112;CL:0000049!5.26e-14!112;CL:0000066!3.81e-10!254;CL:0000738!3.22e-08!140;CL:0002368!2.26e-07!13;CL:0000063!3.18e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.18e-63;33!CL:0002057;8.18e-63;33!CL:0000473;9.99e-45;39!CL:0000234;9.99e-45;39!CL:0000576;7.61e-30;48!CL:0000766;2.00e-18;69!CL:0000453;4.16e-12;5!CL:0000775;6.82e-12;3!CL:0000763;1.57e-10;100!CL:0001014;5.65e-09;2!CL:0001016;5.65e-09;2!CL:0000738;1.15e-07;136!CL:0000094;2.01e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.21e-53,42;CL:0002057,8.21e-53,42;CL:0000473,6.02e-49,48;CL:0000234,6.02e-49,48;CL:0002009,9.90e-43,61;CL:0000766,1.65e-40,72;CL:0000557,2.80e-38,67;CL:0002194,1.04e-37,59;CL:0000576,1.04e-37,59;CL:0000040,1.04e-37,59;CL:0000559,1.04e-37,59;CL:0000839,5.12e-33,66;CL:0000763,1.34e-32,108;CL:0000049,1.34e-32,108;CL:0000738,4.08e-24,136;CL:0002032,4.89e-19,161;CL:0000837,4.89e-19,161;CL:0002031,3.41e-18,120;CL:0000037,6.91e-18,168;CL:0000988,1.52e-16,177;CL:0002087,4.20e-16,115;CL:0000453,4.30e-12,5;CL:0000775,4.84e-12,3;CL:0001014,5.67e-09,2;CL:0001016,5.67e-09,2;CL:0000094,1.69e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.95e-39;42!CL:0000049;2.70e-10;108 | |||
|ontology_enrichment_disease=DOID:305!2.64e-08!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.86e-18!102;UBERON:0003061!3.86e-18!102;UBERON:0002193!1.05e-17!112;UBERON:0002371!1.23e-16!80;UBERON:0001474!6.27e-16!86;UBERON:0004765!3.36e-14!101;UBERON:0001434!3.36e-14!101;UBERON:0002405!2.47e-11!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.63e-33,76;UBERON:0001474,5.68e-30,82;UBERON:0002390,9.79e-30,98;UBERON:0003061,9.79e-30,98;UBERON:0004765,1.15e-26,90;UBERON:0002193,3.00e-26,108;UBERON:0002405,1.42e-25,93;UBERON:0001434,2.81e-23,100;UBERON:0002204,4.69e-12,167;UBERON:0003081,3.08e-11,203;UBERON:0000926,9.33e-07,315;UBERON:0004120,9.33e-07,315;UBERON:0006603,9.33e-07,315 | |||
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| |||
|short_description=p@chr19:1180760..1180775,+ | |||
}} |
Revision as of 18:43, 11 September 2013
Short description: | p@chr19:1180760..1180775, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:1180760..1180775, + |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.21e-53 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.21e-53 | 42 |
defensive cell | 6.02e-49 | 48 |
phagocyte | 6.02e-49 | 48 |
macrophage dendritic cell progenitor | 9.90e-43 | 61 |
myeloid leukocyte | 1.65e-40 | 72 |
granulocyte monocyte progenitor cell | 2.80e-38 | 67 |
monopoietic cell | 1.04e-37 | 59 |
monocyte | 1.04e-37 | 59 |
monoblast | 1.04e-37 | 59 |
promonocyte | 1.04e-37 | 59 |
myeloid lineage restricted progenitor cell | 5.12e-33 | 66 |
myeloid cell | 1.34e-32 | 108 |
common myeloid progenitor | 1.34e-32 | 108 |
leukocyte | 4.08e-24 | 136 |
hematopoietic oligopotent progenitor cell | 4.89e-19 | 161 |
hematopoietic multipotent progenitor cell | 4.89e-19 | 161 |
hematopoietic lineage restricted progenitor cell | 3.41e-18 | 120 |
hematopoietic stem cell | 6.91e-18 | 168 |
hematopoietic cell | 1.52e-16 | 177 |
nongranular leukocyte | 4.20e-16 | 115 |
Langerhans cell | 4.30e-12 | 5 |
neutrophil | 4.84e-12 | 3 |
CD1a-positive Langerhans cell | 5.67e-09 | 2 |
immature CD1a-positive Langerhans cell | 5.67e-09 | 2 |
granulocyte | 1.69e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.63e-33 | 76 |
bone element | 5.68e-30 | 82 |
hematopoietic system | 9.79e-30 | 98 |
blood island | 9.79e-30 | 98 |
skeletal element | 1.15e-26 | 90 |
hemolymphoid system | 3.00e-26 | 108 |
immune system | 1.42e-25 | 93 |
skeletal system | 2.81e-23 | 100 |
musculoskeletal system | 4.69e-12 | 167 |
lateral plate mesoderm | 3.08e-11 | 203 |
mesoderm | 9.33e-07 | 315 |
mesoderm-derived structure | 9.33e-07 | 315 |
presumptive mesoderm | 9.33e-07 | 315 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.