FFCP PHASE1:Hg19::chr20:7238917..7238933,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=-56bp_to_ENST00000428954_5end|coexpression_cluster_id=C1874|description=CAGE_peak_1_at_ENST00000428954_5end|id=chr20:7238917..7238933,-|ontology_enrichment_celltype=CL:0000181!9.74e-07!12;CL:0000417!9.74e-07!12;CL:0000668!9.74e-07!12;CL:0000414!9.74e-07!12;CL:0000412!9.74e-07!12;CL:0000182!9.74e-07!12|ontology_enrichment_celltype_v019=CL:0000182;1.29e-10;12!CL:0000047;8.32e-08;2|ontology_enrichment_celltype_v019_2=CL:0000182,1.17e-10,12|ontology_enrichment_development_v019=UBERON:0010226;7.13e-15;1!UBERON:0000358;1.31e-14;1!UBERON:0010227;1.31e-14;1!UBERON:0008814;8.32e-08;2!UBERON:0010056;8.32e-08;2|ontology_enrichment_disease=DOID:114!5.08e-17!2;DOID:178!3.00e-09!1;DOID:326!3.00e-09!1;DOID:3978!3.00e-09!1;DOID:3394!3.00e-09!1;DOID:5844!3.00e-09!1;DOID:1287!5.74e-09!4|ontology_enrichment_disease_v019=DOID:114;5.94e-08;2|ontology_enrichment_disease_v019_2=DOID:114,6.58e-08,2|ontology_enrichment_uberon=UBERON:0007100!7.50e-14!27;UBERON:0003103!3.88e-12!69;UBERON:0004151!5.72e-12!3;UBERON:0003978!1.87e-11!3;UBERON:0009751!1.87e-11!3;UBERON:0000946!1.87e-11!3;UBERON:0002523!1.87e-11!3;UBERON:0005983!1.87e-11!3;UBERON:0002165!1.87e-11!3;UBERON:0002062!1.87e-11!3;UBERON:0007280!1.87e-11!3;UBERON:0007023!4.84e-11!115;UBERON:0002107!1.06e-10!19;UBERON:0006925!1.06e-10!19;UBERON:0008836!1.06e-10!19;UBERON:0002084!9.44e-10!1;UBERON:0002082!9.44e-10!1;UBERON:0004706!9.44e-10!1;UBERON:0002079!1.84e-09!1;UBERON:0002135!2.77e-09!1;UBERON:0008835!3.24e-09!22;UBERON:0003894!3.24e-09!22;UBERON:0002146!3.83e-09!1;UBERON:0005623!3.83e-09!1;UBERON:0001301!4.15e-09!1;UBERON:0009854!8.31e-09!23;UBERON:0005172!2.51e-08!55;UBERON:0005173!2.51e-08!55;UBERON:0007499!4.38e-08!25;UBERON:0009497!4.38e-08!25;UBERON:0000015!4.38e-08!25;UBERON:0002423!4.38e-08!25;UBERON:0006235!4.38e-08!25;UBERON:0004161!4.38e-08!25;UBERON:0005057!9.14e-08!26;UBERON:0009856!9.14e-08!26;UBERON:0002417!2.11e-07!61;UBERON:0000916!2.11e-07!61|ontology_enrichment_uberon_v019=UBERON:0004151;8.30e-19;3!UBERON:0002107;1.81e-17;19!UBERON:0006925;1.81e-17;19!UBERON:0002084;7.13e-15;1!UBERON:0002082;7.13e-15;1!UBERON:0002079;1.31e-14;1!UBERON:0002423;2.79e-13;25!UBERON:0002365;1.07e-10;31!UBERON:0002330;1.07e-10;31!UBERON:0002368;2.75e-09;33!UBERON:0007100;8.51e-09;25!UBERON:0002081;5.94e-08;2!UBERON:0000341;8.32e-08;2!UBERON:0000949;7.47e-07;43|ontology_enrichment_uberon_v019_2=UBERON:0004151,9.50e-19,3;UBERON:0002107,1.60e-17,19;UBERON:0006925,1.60e-17,19;UBERON:0008836,1.60e-17,19;UBERON:0008835,3.89e-15,22;UBERON:0003894,3.89e-15,22;UBERON:0002084,6.22e-15,1;UBERON:0002082,6.22e-15,1;UBERON:0010226,6.22e-15,1;UBERON:0009854,1.77e-14,23;UBERON:0002079,1.84e-14,1;UBERON:0007499,2.54e-13,25;UBERON:0009497,2.54e-13,25;UBERON:0000015,2.54e-13,25;UBERON:0002423,2.54e-13,25;UBERON:0006235,2.54e-13,25;UBERON:0004161,2.54e-13,25;UBERON:0009856,8.29e-13,26;UBERON:0002365,9.74e-11,31;UBERON:0002330,9.74e-11,31;UBERON:0002368,1.67e-09,35;UBERON:0007100,3.86e-08,27;UBERON:0002081,7.03e-08,2;UBERON:0010227,7.03e-08,2;UBERON:0000341,9.19e-08,2;UBERON:0000949,2.25e-07,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,2.94848165003288,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73988653579522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80133383961574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.458320848023367,0,0.798716001995964,2.14613024068285,2.67805748930247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.681909645754975,0,0,0,2.1440859791201,3.97255182219259,0,0,0,0,0,0,0,0,3.95691030930823,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-56bp_to_ENST00000428954_5end | |||
|coexpression_cluster_id=C1874 | |||
|description=CAGE_peak_1_at_ENST00000428954_5end | |||
|id=chr20:7238917..7238933,- | |||
|ontology_enrichment_celltype=CL:0000181!9.74e-07!12;CL:0000417!9.74e-07!12;CL:0000668!9.74e-07!12;CL:0000414!9.74e-07!12;CL:0000412!9.74e-07!12;CL:0000182!9.74e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.29e-10;12!CL:0000047;8.32e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.17e-10,12 | |||
|ontology_enrichment_development_v019=UBERON:0010226;7.13e-15;1!UBERON:0000358;1.31e-14;1!UBERON:0010227;1.31e-14;1!UBERON:0008814;8.32e-08;2!UBERON:0010056;8.32e-08;2 | |||
|ontology_enrichment_disease=DOID:114!5.08e-17!2;DOID:178!3.00e-09!1;DOID:326!3.00e-09!1;DOID:3978!3.00e-09!1;DOID:3394!3.00e-09!1;DOID:5844!3.00e-09!1;DOID:1287!5.74e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:114;5.94e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,6.58e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0007100!7.50e-14!27;UBERON:0003103!3.88e-12!69;UBERON:0004151!5.72e-12!3;UBERON:0003978!1.87e-11!3;UBERON:0009751!1.87e-11!3;UBERON:0000946!1.87e-11!3;UBERON:0002523!1.87e-11!3;UBERON:0005983!1.87e-11!3;UBERON:0002165!1.87e-11!3;UBERON:0002062!1.87e-11!3;UBERON:0007280!1.87e-11!3;UBERON:0007023!4.84e-11!115;UBERON:0002107!1.06e-10!19;UBERON:0006925!1.06e-10!19;UBERON:0008836!1.06e-10!19;UBERON:0002084!9.44e-10!1;UBERON:0002082!9.44e-10!1;UBERON:0004706!9.44e-10!1;UBERON:0002079!1.84e-09!1;UBERON:0002135!2.77e-09!1;UBERON:0008835!3.24e-09!22;UBERON:0003894!3.24e-09!22;UBERON:0002146!3.83e-09!1;UBERON:0005623!3.83e-09!1;UBERON:0001301!4.15e-09!1;UBERON:0009854!8.31e-09!23;UBERON:0005172!2.51e-08!55;UBERON:0005173!2.51e-08!55;UBERON:0007499!4.38e-08!25;UBERON:0009497!4.38e-08!25;UBERON:0000015!4.38e-08!25;UBERON:0002423!4.38e-08!25;UBERON:0006235!4.38e-08!25;UBERON:0004161!4.38e-08!25;UBERON:0005057!9.14e-08!26;UBERON:0009856!9.14e-08!26;UBERON:0002417!2.11e-07!61;UBERON:0000916!2.11e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;8.30e-19;3!UBERON:0002107;1.81e-17;19!UBERON:0006925;1.81e-17;19!UBERON:0002084;7.13e-15;1!UBERON:0002082;7.13e-15;1!UBERON:0002079;1.31e-14;1!UBERON:0002423;2.79e-13;25!UBERON:0002365;1.07e-10;31!UBERON:0002330;1.07e-10;31!UBERON:0002368;2.75e-09;33!UBERON:0007100;8.51e-09;25!UBERON:0002081;5.94e-08;2!UBERON:0000341;8.32e-08;2!UBERON:0000949;7.47e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,9.50e-19,3;UBERON:0002107,1.60e-17,19;UBERON:0006925,1.60e-17,19;UBERON:0008836,1.60e-17,19;UBERON:0008835,3.89e-15,22;UBERON:0003894,3.89e-15,22;UBERON:0002084,6.22e-15,1;UBERON:0002082,6.22e-15,1;UBERON:0010226,6.22e-15,1;UBERON:0009854,1.77e-14,23;UBERON:0002079,1.84e-14,1;UBERON:0007499,2.54e-13,25;UBERON:0009497,2.54e-13,25;UBERON:0000015,2.54e-13,25;UBERON:0002423,2.54e-13,25;UBERON:0006235,2.54e-13,25;UBERON:0004161,2.54e-13,25;UBERON:0009856,8.29e-13,26;UBERON:0002365,9.74e-11,31;UBERON:0002330,9.74e-11,31;UBERON:0002368,1.67e-09,35;UBERON:0007100,3.86e-08,27;UBERON:0002081,7.03e-08,2;UBERON:0010227,7.03e-08,2;UBERON:0000341,9.19e-08,2;UBERON:0000949,2.25e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.80265104465493,2.94848165003288,2.95394953340702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.73988653579522,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80133383961574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,0.458320848023367,0,0.798716001995964,2.14613024068285,2.67805748930247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.681909645754975,0,0,0,2.1440859791201,3.97255182219259,0,0,0,0,0,0,0,0,3.95691030930823,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0,0,0,0,0,1.52401723527873,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p1@ENST00000428954 | |||
}} |
Revision as of 09:42, 12 September 2013
Short description: | p1@ENST00000428954 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_ENST00000428954_5end |
Coexpression cluster: | C1874_left_Hepatocyte_liver_heart_Adipocyte_mature_small |
Association with transcript: | -56bp_to_ENST00000428954_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.17e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
cardiac chamber | 9.50e-19 | 3 |
liver | 1.60e-17 | 19 |
digestive gland | 1.60e-17 | 19 |
liver bud | 1.60e-17 | 19 |
hepatic diverticulum | 3.89e-15 | 22 |
liver primordium | 3.89e-15 | 22 |
heart left ventricle | 6.22e-15 | 1 |
cardiac ventricle | 6.22e-15 | 1 |
future cardiac ventricle | 6.22e-15 | 1 |
digestive tract diverticulum | 1.77e-14 | 23 |
left cardiac atrium | 1.84e-14 | 1 |
epithelial sac | 2.54e-13 | 25 |
epithelium of foregut-midgut junction | 2.54e-13 | 25 |
anatomical boundary | 2.54e-13 | 25 |
hepatobiliary system | 2.54e-13 | 25 |
foregut-midgut junction | 2.54e-13 | 25 |
septum transversum | 2.54e-13 | 25 |
sac | 8.29e-13 | 26 |
exocrine gland | 9.74e-11 | 31 |
exocrine system | 9.74e-11 | 31 |
endocrine gland | 1.67e-09 | 35 |
primary circulatory organ | 3.86e-08 | 27 |
cardiac atrium | 7.03e-08 | 2 |
future cardiac atrium | 7.03e-08 | 2 |
throat | 9.19e-08 | 2 |
endocrine system | 2.25e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
heart disease | 6.58e-08 | 2 |
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