FFCP PHASE1:Hg19::chr20:44179476..44179490,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C39|description=CAGE_peak_at_chr20:44179476..44179490,-|id=chr20:44179476..44179490,-|ontology_enrichment_celltype=CL:0000062!1.56e-07!11;CL:0000375!1.56e-07!11;CL:0000335!1.56e-07!11;CL:0002178!2.97e-07!3|ontology_enrichment_celltype_v019=CL:0000062;1.16e-08;9|ontology_enrichment_celltype_v019_2=CL:0000062,2.63e-07,11;CL:0000375,2.63e-07,11;CL:0000335,2.63e-07,11|ontology_enrichment_development_v019=UBERON:0007297;3.61e-34;2!CL:0000335;2.55e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006947!1.83e-25!3;UBERON:0004054!1.83e-25!3;UBERON:0001301!8.95e-20!1;UBERON:0001000!1.08e-19!1;UBERON:0005352!1.08e-19!1;UBERON:0001282!1.88e-19!1;UBERON:0009842!1.88e-19!1;UBERON:0003704!1.88e-19!1;UBERON:0001171!1.88e-19!1;UBERON:0001172!1.88e-19!1;UBERON:0005904!2.26e-19!4;UBERON:0003135!1.68e-15!11;UBERON:0003101!4.66e-08!22;UBERON:0000079!4.66e-08!22;UBERON:0000058!5.92e-07!26|ontology_enrichment_uberon_v019=UBERON:0006947;7.79e-88;3!UBERON:0004054;7.79e-88;3!UBERON:0001301;1.23e-66;1!UBERON:0005904;2.83e-66;4!UBERON:0001000;3.34e-66;1!UBERON:0005352;3.34e-66;1!UBERON:0000058;2.22e-27;10!UBERON:0003135;5.16e-25;11!UBERON:0004175;1.05e-13;21!UBERON:0003101;3.89e-13;22!UBERON:0000079;3.89e-13;22|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.24e-88,3;UBERON:0004054,6.24e-88,3;UBERON:0001301,1.23e-66,1;UBERON:0001000,2.39e-66,1;UBERON:0005352,2.39e-66,1;UBERON:0005904,2.40e-66,4;UBERON:0003135,4.86e-25,11;UBERON:0000058,4.91e-15,19;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0004175,1.03e-11,25;UBERON:0005103,1.24e-09,8;UBERON:0000083,1.24e-09,8;UBERON:0009201,1.24e-09,8;UBERON:0006553,1.24e-09,8;UBERON:0003074,1.24e-09,8;UBERON:0003060,1.24e-09,8;UBERON:0000080,1.04e-08,9;UBERON:0002120,1.04e-08,9;UBERON:0004875,1.04e-08,9;UBERON:0005721,1.04e-08,9;UBERON:0005754,1.04e-08,9;UBERON:0007297,1.04e-08,9;UBERON:0004876,2.32e-07,11;UBERON:0003887,7.48e-07,12|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.78469342155369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr20:44179476..44179490,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C39 | |||
|description=CAGE_peak_at_chr20:44179476..44179490,- | |||
|id=chr20:44179476..44179490,- | |||
|ontology_enrichment_celltype=CL:0000062!1.56e-07!11;CL:0000375!1.56e-07!11;CL:0000335!1.56e-07!11;CL:0002178!2.97e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000062;1.16e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,2.63e-07,11;CL:0000375,2.63e-07,11;CL:0000335,2.63e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0007297;3.61e-34;2!CL:0000335;2.55e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006947!1.83e-25!3;UBERON:0004054!1.83e-25!3;UBERON:0001301!8.95e-20!1;UBERON:0001000!1.08e-19!1;UBERON:0005352!1.08e-19!1;UBERON:0001282!1.88e-19!1;UBERON:0009842!1.88e-19!1;UBERON:0003704!1.88e-19!1;UBERON:0001171!1.88e-19!1;UBERON:0001172!1.88e-19!1;UBERON:0005904!2.26e-19!4;UBERON:0003135!1.68e-15!11;UBERON:0003101!4.66e-08!22;UBERON:0000079!4.66e-08!22;UBERON:0000058!5.92e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;7.79e-88;3!UBERON:0004054;7.79e-88;3!UBERON:0001301;1.23e-66;1!UBERON:0005904;2.83e-66;4!UBERON:0001000;3.34e-66;1!UBERON:0005352;3.34e-66;1!UBERON:0000058;2.22e-27;10!UBERON:0003135;5.16e-25;11!UBERON:0004175;1.05e-13;21!UBERON:0003101;3.89e-13;22!UBERON:0000079;3.89e-13;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.24e-88,3;UBERON:0004054,6.24e-88,3;UBERON:0001301,1.23e-66,1;UBERON:0001000,2.39e-66,1;UBERON:0005352,2.39e-66,1;UBERON:0005904,2.40e-66,4;UBERON:0003135,4.86e-25,11;UBERON:0000058,4.91e-15,19;UBERON:0003101,3.77e-13,22;UBERON:0000079,3.77e-13,22;UBERON:0004175,1.03e-11,25;UBERON:0005103,1.24e-09,8;UBERON:0000083,1.24e-09,8;UBERON:0009201,1.24e-09,8;UBERON:0006553,1.24e-09,8;UBERON:0003074,1.24e-09,8;UBERON:0003060,1.24e-09,8;UBERON:0000080,1.04e-08,9;UBERON:0002120,1.04e-08,9;UBERON:0004875,1.04e-08,9;UBERON:0005721,1.04e-08,9;UBERON:0005754,1.04e-08,9;UBERON:0007297,1.04e-08,9;UBERON:0004876,2.32e-07,11;UBERON:0003887,7.48e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.78469342155369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr20:44179476..44179490,- | |||
}} |
Revision as of 08:43, 12 September 2013
Short description: | p@chr20:44179476..44179490, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr20:44179476..44179490, - |
Coexpression cluster: | C39_epididymis_ductus_seminal_testis_acute_thyroid_CD133 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 2.63e-07 | 11 |
osteoprogenitor cell | 2.63e-07 | 11 |
mesenchyme condensation cell | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
male genital duct | 6.24e-88 | 3 |
internal male genitalia | 6.24e-88 | 3 |
epididymis | 1.23e-66 | 1 |
vas deferens | 2.39e-66 | 1 |
spermatic cord | 2.39e-66 | 1 |
duct of male reproductive system | 2.40e-66 | 4 |
male reproductive organ | 4.86e-25 | 11 |
duct | 4.91e-15 | 19 |
male organism | 3.77e-13 | 22 |
male reproductive system | 3.77e-13 | 22 |
internal genitalia | 1.03e-11 | 25 |
mesonephric epithelium | 1.24e-09 | 8 |
mesonephric tubule | 1.24e-09 | 8 |
nephric duct | 1.24e-09 | 8 |
renal duct | 1.24e-09 | 8 |
mesonephric duct | 1.24e-09 | 8 |
pronephric duct | 1.24e-09 | 8 |
mesonephros | 1.04e-08 | 9 |
pronephros | 1.04e-08 | 9 |
nephrogenic cord | 1.04e-08 | 9 |
pronephric mesoderm | 1.04e-08 | 9 |
rostral part of nephrogenic cord | 1.04e-08 | 9 |
presumptive pronephric mesoderm | 1.04e-08 | 9 |
urogenital ridge | 2.32e-07 | 11 |
intraembryonic coelom | 7.48e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.