FFCP PHASE1:Hg19::chr21:47546401..47546428,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1292|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2212|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc002zic.1_5end|coexpression_cluster_id=C198|description=CAGE_peak_40_at_COL6A2_5end|id=chr21:47546401..47546428,+|ontology_enrichment_celltype=CL:0000055!8.33e-33!180;CL:0000057!3.83e-24!75;CL:0000048!2.35e-11!430;CL:0002620!5.72e-11!23;CL:0000723!1.23e-10!436;CL:0000034!2.39e-10!444;CL:0000680!3.28e-10!57;CL:0000056!3.28e-10!57;CL:0000355!3.28e-10!57;CL:0000187!6.53e-10!54;CL:0000183!9.54e-10!59;CL:0000393!1.78e-08!60;CL:0000211!1.78e-08!60;CL:0000499!2.64e-08!27;CL:0000192!5.67e-08!42;CL:0000514!5.67e-08!42;CL:0002570!9.21e-08!8;CL:0002320!3.57e-07!365;CL:0002334!6.41e-07!12|ontology_enrichment_celltype_v019=CL:0000499;4.85e-10;28!CL:0002521;1.49e-09;3!CL:0000135;1.77e-09;3!CL:0000388;1.77e-09;3!CL:0002334;3.62e-08;12!CL:0002583;3.54e-07;2|ontology_enrichment_celltype_v019_2=CL:0000057,2.53e-13,76;CL:0000048,3.62e-10,427;CL:0000499,6.71e-10,28;CL:0000723,7.84e-10,433;CL:0002521,1.31e-09,3;CL:0000135,1.95e-09,3;CL:0000388,1.95e-09,3;CL:0000034,2.12e-09,441;CL:0002320,2.93e-08,361;CL:0002334,4.69e-08,12;CL:0002583,3.46e-07,2;CL:0000134,7.08e-07,354|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!5.62e-15!83;UBERON:0002329!5.62e-15!83;UBERON:0003077!5.62e-15!83;UBERON:0003059!5.62e-15!83;UBERON:0007282!5.62e-15!83;UBERON:0009618!5.62e-15!83;UBERON:0007285!5.62e-15!83;UBERON:0004290!4.76e-14!70;UBERON:0002385!6.52e-12!63;UBERON:0001015!6.52e-12!63;UBERON:0000383!6.52e-12!63;UBERON:0000486!1.06e-11!82;UBERON:0001134!2.86e-11!61;UBERON:0002036!2.86e-11!61;UBERON:0003082!2.86e-11!61;UBERON:0001013!4.80e-11!14;UBERON:0005256!8.17e-11!143;UBERON:0002199!3.28e-09!45;UBERON:0002416!3.28e-09!45;UBERON:0003102!4.89e-09!95;UBERON:0002100!8.78e-08!216;UBERON:0002384!3.87e-07!375|ontology_enrichment_uberon_v019=UBERON:0002072;4.81e-15;5!UBERON:0001013;1.15e-11;14!UBERON:0002190;1.49e-09;3!UBERON:0007846;1.77e-09;3!UBERON:0000043;1.77e-09;3!UBERON:0007845;1.77e-09;3!UBERON:0004905;4.98e-09;8!UBERON:0000982;4.98e-09;8!UBERON:0004770;4.98e-09;8|ontology_enrichment_uberon_v019_2=UBERON:0002072,4.13e-15,5;UBERON:0001013,6.73e-12,14;UBERON:0002190,1.31e-09,3;UBERON:0007846,1.95e-09,3;UBERON:0000043,1.95e-09,3;UBERON:0007845,1.95e-09,3;UBERON:0004905,4.47e-09,8;UBERON:0000982,4.47e-09,8;UBERON:0004770,4.47e-09,8;UBERON:0007524,7.18e-09,73;UBERON:0000486,2.12e-08,83;UBERON:0002329,3.27e-08,71;UBERON:0003059,3.27e-08,71;UBERON:0007282,3.27e-08,71;UBERON:0004290,3.27e-08,71;UBERON:0009618,3.27e-08,71;UBERON:0003077,4.86e-08,72;UBERON:0007285,4.86e-08,72;UBERON:0002384,1.01e-07,371;UBERON:0003102,3.33e-07,99;UBERON:0007503,4.16e-07,78|phase1_expression=1.09007027562334,0.856402095563933,0.845726424575827,0,0,0.872338524100369,5.06599756336621,2.52687949370732,1.30592814099919,0,0,0,0,0.247532705920093,2.65117900582333,1.34465029290355,1.80808358407193,0.730310090387373,2.43966399395253,0.123121058076788,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,0.50133791063589,1.59331170856906,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.39293562831038,0.264818361626438,3.15520282823695,0.354668382198357,0,1.06748995729705,0.74000264525148,0,0.269421344139376,0.163461903113459,0.151357427644931,0.576175924479999,0,1.5608003841516,1.1409436430889,2.54062756938062,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,1.84251475967652,0.309977343527296,4.75201142912821,1.97813543422845,0,0,0.168336113954066,0.125118519871964,0,0,0.612975591598039,1.05166641234618,0.113432183160021,0.358779271377724,0.85422955527427,0.423863802319124,1.20036438433761,0.618315175430633,0.257640540045629,0.37223371266318,0.675105328965065,0.194874010322397,0.252433774244115,0.276149695926898,0.80823028409406,0.355009592516614,0,0.339121184620975,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,5.14592750554308,0,0.928735856063958,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.22001485746285,0.129271715757778,3.57656445851882,1.690605505112,0.26593811658487,0,0,1.41849132023278,0.266422179016099,1.14382394926518,0,0.823240336780769,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,2.00068208423871,1.6275901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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1292 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2212 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002zic.1_5end | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_40_at_COL6A2_5end | |||
|id=chr21:47546401..47546428,+ | |||
|ontology_enrichment_celltype=CL:0000055!8.33e-33!180;CL:0000057!3.83e-24!75;CL:0000048!2.35e-11!430;CL:0002620!5.72e-11!23;CL:0000723!1.23e-10!436;CL:0000034!2.39e-10!444;CL:0000680!3.28e-10!57;CL:0000056!3.28e-10!57;CL:0000355!3.28e-10!57;CL:0000187!6.53e-10!54;CL:0000183!9.54e-10!59;CL:0000393!1.78e-08!60;CL:0000211!1.78e-08!60;CL:0000499!2.64e-08!27;CL:0000192!5.67e-08!42;CL:0000514!5.67e-08!42;CL:0002570!9.21e-08!8;CL:0002320!3.57e-07!365;CL:0002334!6.41e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000499;4.85e-10;28!CL:0002521;1.49e-09;3!CL:0000135;1.77e-09;3!CL:0000388;1.77e-09;3!CL:0002334;3.62e-08;12!CL:0002583;3.54e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.53e-13,76;CL:0000048,3.62e-10,427;CL:0000499,6.71e-10,28;CL:0000723,7.84e-10,433;CL:0002521,1.31e-09,3;CL:0000135,1.95e-09,3;CL:0000388,1.95e-09,3;CL:0000034,2.12e-09,441;CL:0002320,2.93e-08,361;CL:0002334,4.69e-08,12;CL:0002583,3.46e-07,2;CL:0000134,7.08e-07,354 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!5.62e-15!83;UBERON:0002329!5.62e-15!83;UBERON:0003077!5.62e-15!83;UBERON:0003059!5.62e-15!83;UBERON:0007282!5.62e-15!83;UBERON:0009618!5.62e-15!83;UBERON:0007285!5.62e-15!83;UBERON:0004290!4.76e-14!70;UBERON:0002385!6.52e-12!63;UBERON:0001015!6.52e-12!63;UBERON:0000383!6.52e-12!63;UBERON:0000486!1.06e-11!82;UBERON:0001134!2.86e-11!61;UBERON:0002036!2.86e-11!61;UBERON:0003082!2.86e-11!61;UBERON:0001013!4.80e-11!14;UBERON:0005256!8.17e-11!143;UBERON:0002199!3.28e-09!45;UBERON:0002416!3.28e-09!45;UBERON:0003102!4.89e-09!95;UBERON:0002100!8.78e-08!216;UBERON:0002384!3.87e-07!375 | |||
|ontology_enrichment_uberon_v019=UBERON:0002072;4.81e-15;5!UBERON:0001013;1.15e-11;14!UBERON:0002190;1.49e-09;3!UBERON:0007846;1.77e-09;3!UBERON:0000043;1.77e-09;3!UBERON:0007845;1.77e-09;3!UBERON:0004905;4.98e-09;8!UBERON:0000982;4.98e-09;8!UBERON:0004770;4.98e-09;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002072,4.13e-15,5;UBERON:0001013,6.73e-12,14;UBERON:0002190,1.31e-09,3;UBERON:0007846,1.95e-09,3;UBERON:0000043,1.95e-09,3;UBERON:0007845,1.95e-09,3;UBERON:0004905,4.47e-09,8;UBERON:0000982,4.47e-09,8;UBERON:0004770,4.47e-09,8;UBERON:0007524,7.18e-09,73;UBERON:0000486,2.12e-08,83;UBERON:0002329,3.27e-08,71;UBERON:0003059,3.27e-08,71;UBERON:0007282,3.27e-08,71;UBERON:0004290,3.27e-08,71;UBERON:0009618,3.27e-08,71;UBERON:0003077,4.86e-08,72;UBERON:0007285,4.86e-08,72;UBERON:0002384,1.01e-07,371;UBERON:0003102,3.33e-07,99;UBERON:0007503,4.16e-07,78 | |||
|phase1_expression=1.09007027562334,0.856402095563933,0.845726424575827,0,0,0.872338524100369,5.06599756336621,2.52687949370732,1.30592814099919,0,0,0,0,0.247532705920093,2.65117900582333,1.34465029290355,1.80808358407193,0.730310090387373,2.43966399395253,0.123121058076788,0.408001382488506,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,0.50133791063589,1.59331170856906,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,1.39293562831038,0.264818361626438,3.15520282823695,0.354668382198357,0,1.06748995729705,0.74000264525148,0,0.269421344139376,0.163461903113459,0.151357427644931,0.576175924479999,0,1.5608003841516,1.1409436430889,2.54062756938062,0.117434498643765,0.323745888736263,0.140450806702248,0.204154171254893,1.84251475967652,0.309977343527296,4.75201142912821,1.97813543422845,0,0,0.168336113954066,0.125118519871964,0,0,0.612975591598039,1.05166641234618,0.113432183160021,0.358779271377724,0.85422955527427,0.423863802319124,1.20036438433761,0.618315175430633,0.257640540045629,0.37223371266318,0.675105328965065,0.194874010322397,0.252433774244115,0.276149695926898,0.80823028409406,0.355009592516614,0,0.339121184620975,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,5.14592750554308,0,0.928735856063958,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0.22001485746285,0.129271715757778,3.57656445851882,1.690605505112,0.26593811658487,0,0,1.41849132023278,0.266422179016099,1.14382394926518,0,0.823240336780769,0.65147236858747,0.355391948742546,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.289562613335158,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0.613457458595699,2.00068208423871,1.62759014219841,2.49565033836969,1.07057393278297,0.630809660135739,0.234282829985426,1.20378439891088,6.82222512167955,3.10419213877515,0,0.368738337083406,1.12948698808508,0.979005787313703,0.343143423810856,0,0,0,0,0,0,0,0.153461973288062,1.12264037773229,0.384417447767103,0,0.804269605718038,1.48418066444991,2.31314540703983,3.55123450626254,0.328508624055237,2.07701771673448,2.09178681227927,0,0,0,0.803701137152247,1.0925470080403,3.8026080338233,0,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165018999841176,0,0,0,2.51343867559517,0.462145851343933,0.307007349452259,0.413509717453592,0.537101224341368,0.290033387828457,0.0852266274161009,0.801288320820636,0,0,0,0,0,1.25924938732256,0,0,0,0,1.66791797193528,0.286249773483982,0,0,0.38126038784765,0.255897791311334,0,1.59101623962968,0.78494864019923,0,0.823611089208164,0.117812402345686,0,0,0,0,0.487426979262569,0,1.50149902548784,1.97967604735198,0,0,1.32687795048244,0.438450885253763,1.15755106853338,1.9676842561399,0.405820753925408,0.30982349809975,0.563391205064483,0.143411352204052,0.196498082026242,0,0.354761064070598,2.11107635297664,2.30506425071931,0,0,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0,0,0,0.222617410045812,0,0,1.19548792950642,0.276283915531148,0,0,0,0.622079175323615,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07730361905316,0,0.23056390438806,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,1.60515529459758,0,0,0,0,0.394584402849391,1.20990716048664,0,0.063186579628488,0,0,0,0,0.313932918407225,0,0,0,0.173559738335131,0,0,0.17472666824203,0.171986032471617,0,0,0,0.387956065953678,0.0882561266915003,0.451961481561065,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0.104602846312333,0,0.288950589901519,0,0,0,0,0,0.837847203816763,0.458320848023367,0,0,0.429226048136571,0,0,1.08089965062721,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0.105600336519406,0,0,0.714695326373367,0,0,0.542999601753713,0,0.326587360109409,0,0,0,0.113312091520126,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.74627401443437,1.16856654923612,0.554805861502613,0.378806010550178,1.76097531226803,0,1.14420034198462,0.453692771289717,0.466311601748341,0.295710299979268,0.477890301491107,2.24901556081802,0.776314784381297,0.414706207840855,0.797525143673985,1.5652351854352,0.300515217994437,0,0,0.727394636810238,0,0.464033759878494,1.19428766609585,0,1.71697852591396,0.673498977531838,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,1.05802783107205,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0.76276419093433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| |||
|short_description=p40@COL6A2 | |||
}} |
Revision as of 10:50, 12 September 2013
Short description: | p40@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_40_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | 0bp_to_uc002zic.1_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.53e-13 | 76 |
multi fate stem cell | 3.62e-10 | 427 |
stromal cell | 6.71e-10 | 28 |
somatic stem cell | 7.84e-10 | 433 |
subcutaneous fat cell | 1.31e-09 | 3 |
fibrocyte | 1.95e-09 | 3 |
tendon cell | 1.95e-09 | 3 |
stem cell | 2.12e-09 | 441 |
connective tissue cell | 2.93e-08 | 361 |
preadipocyte | 4.69e-08 | 12 |
subcutaneous preadipocyte | 3.46e-07 | 2 |
mesenchymal cell | 7.08e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
hypodermis | 4.13e-15 | 5 |
adipose tissue | 6.73e-12 | 14 |
subcutaneous adipose tissue | 1.31e-09 | 3 |
dense regular connective tissue | 1.95e-09 | 3 |
tendon | 1.95e-09 | 3 |
regular connective tissue | 1.95e-09 | 3 |
articulation | 4.47e-09 | 8 |
skeletal joint | 4.47e-09 | 8 |
articular system | 4.47e-09 | 8 |
dense mesenchyme tissue | 7.18e-09 | 73 |
multilaminar epithelium | 2.12e-08 | 83 |
somite | 3.27e-08 | 71 |
presomitic mesoderm | 3.27e-08 | 71 |
presumptive segmental plate | 3.27e-08 | 71 |
dermomyotome | 3.27e-08 | 71 |
trunk paraxial mesoderm | 3.27e-08 | 71 |
paraxial mesoderm | 4.86e-08 | 72 |
presumptive paraxial mesoderm | 4.86e-08 | 72 |
connective tissue | 1.01e-07 | 371 |
surface structure | 3.33e-07 | 99 |
epithelial vesicle | 4.16e-07 | 78 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.