FFCP PHASE1:Hg19::chr3:52525071..52525085,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=11188|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=18006|TSSclassifier=S|UniProt=|association_with_transcript=-4bp_to_uc003deh.3_5end|coexpression_cluster_id=C67|description=CAGE_peak_15_at_NISCH_5end|id=chr3:52525071..52525085,+|ontology_enrichment_celltype=CL:0002194!1.23e-30!63;CL:0000576!1.23e-30!63;CL:0000040!1.23e-30!63;CL:0000559!1.23e-30!63;CL:0002009!1.99e-29!65;CL:0000839!1.30e-28!70;CL:0000557!4.40e-28!71;CL:0000766!1.20e-25!76;CL:0002057!1.23e-23!42;CL:0000860!1.24e-21!45;CL:0000763!2.84e-18!112;CL:0000049!2.84e-18!112;CL:0002087!2.10e-15!119;CL:0000738!1.16e-12!140;CL:0002031!2.34e-12!124;CL:0000037!5.25e-11!172;CL:0000566!5.25e-11!172;CL:0000988!6.98e-10!182;CL:0002032!1.77e-09!165;CL:0000837!1.77e-09!165;CL:0002619!2.25e-09!3;CL:0000842!1.16e-07!3|ontology_enrichment_celltype_v019=CL:0002619;2.39e-55;3!CL:0000235;1.47e-27;6!CL:0000473;6.82e-10;39!CL:0000234;6.82e-10;39!CL:0000576;1.31e-09;48!CL:0000766;1.34e-07;69|ontology_enrichment_celltype_v019_2=CL:0002619,2.40e-55,3;CL:0000235,1.12e-27,6;CL:0002194,6.65e-19,59;CL:0000576,6.65e-19,59;CL:0000040,6.65e-19,59;CL:0000559,6.65e-19,59;CL:0002009,2.79e-18,61;CL:0000839,6.90e-17,66;CL:0000557,1.24e-16,67;CL:0000766,1.82e-15,72;CL:0000763,6.75e-13,108;CL:0000049,6.75e-13,108;CL:0002087,1.49e-09,115;CL:0000473,1.71e-09,48;CL:0000234,1.71e-09,48;CL:0002031,3.89e-09,120;CL:0002032,1.81e-08,161;CL:0000837,1.81e-08,161;CL:0000037,4.35e-08,168;CL:0000738,5.29e-08,136;CL:0000988,1.21e-07,177|ontology_enrichment_development_v019=UBERON:0010115;3.25e-19;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!4.25e-25!102;UBERON:0003061!4.25e-25!102;UBERON:0002371!6.44e-24!80;UBERON:0002193!1.99e-23!112;UBERON:0001474!1.25e-21!86;UBERON:0002405!6.43e-20!115;UBERON:0004765!4.13e-17!101;UBERON:0001434!4.13e-17!101;UBERON:0007023!4.43e-12!115;UBERON:0003081!2.29e-11!216;UBERON:0002204!7.50e-08!167;UBERON:0000062!2.05e-07!511|ontology_enrichment_uberon_v019=UBERON:0002363;3.25e-19;1!UBERON:0002360;2.72e-10;2!UBERON:0000094;2.72e-10;2!UBERON:0010743;2.72e-10;2|ontology_enrichment_uberon_v019_2=UBERON:0002363,5.62e-19,1;UBERON:0007645,5.62e-19,1;UBERON:0007647,5.62e-19,1;UBERON:0010115,5.62e-19,1;UBERON:0002371,1.22e-14,76;UBERON:0001474,1.50e-13,82;UBERON:0004765,2.56e-12,90;UBERON:0002405,6.57e-12,93;UBERON:0002390,2.78e-11,98;UBERON:0003061,2.78e-11,98;UBERON:0001434,4.75e-11,100;UBERON:0002193,3.35e-10,108;UBERON:0002360,3.58e-10,2;UBERON:0000094,3.58e-10,2;UBERON:0010743,3.58e-10,2|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,8.50878802111712,4.53451132426571,8.75756929956234,1.59938062657521,0,0.727752183563449,0.929716147622738,0,0,0,0.256160706529101,0.709446689665756,0,0,0,0.376484679085209,0,0.898893937780338,0,0,0,0.659702600373432,0.398927315243264,1.27867425159808,0.290209238628584,0.56738522469114,0,0.251248665256743,0,0,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0,0.112328631146495,0.901061357049038,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72351904261178,0,0.743155811443641,0,0,0,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.00902836572851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1490322207942,0.211673582723883,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=11188 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=18006 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-4bp_to_uc003deh.3_5end | |||
|coexpression_cluster_id=C67 | |||
|description=CAGE_peak_15_at_NISCH_5end | |||
|id=chr3:52525071..52525085,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.23e-30!63;CL:0000576!1.23e-30!63;CL:0000040!1.23e-30!63;CL:0000559!1.23e-30!63;CL:0002009!1.99e-29!65;CL:0000839!1.30e-28!70;CL:0000557!4.40e-28!71;CL:0000766!1.20e-25!76;CL:0002057!1.23e-23!42;CL:0000860!1.24e-21!45;CL:0000763!2.84e-18!112;CL:0000049!2.84e-18!112;CL:0002087!2.10e-15!119;CL:0000738!1.16e-12!140;CL:0002031!2.34e-12!124;CL:0000037!5.25e-11!172;CL:0000566!5.25e-11!172;CL:0000988!6.98e-10!182;CL:0002032!1.77e-09!165;CL:0000837!1.77e-09!165;CL:0002619!2.25e-09!3;CL:0000842!1.16e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002619;2.39e-55;3!CL:0000235;1.47e-27;6!CL:0000473;6.82e-10;39!CL:0000234;6.82e-10;39!CL:0000576;1.31e-09;48!CL:0000766;1.34e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002619,2.40e-55,3;CL:0000235,1.12e-27,6;CL:0002194,6.65e-19,59;CL:0000576,6.65e-19,59;CL:0000040,6.65e-19,59;CL:0000559,6.65e-19,59;CL:0002009,2.79e-18,61;CL:0000839,6.90e-17,66;CL:0000557,1.24e-16,67;CL:0000766,1.82e-15,72;CL:0000763,6.75e-13,108;CL:0000049,6.75e-13,108;CL:0002087,1.49e-09,115;CL:0000473,1.71e-09,48;CL:0000234,1.71e-09,48;CL:0002031,3.89e-09,120;CL:0002032,1.81e-08,161;CL:0000837,1.81e-08,161;CL:0000037,4.35e-08,168;CL:0000738,5.29e-08,136;CL:0000988,1.21e-07,177 | |||
|ontology_enrichment_development_v019=UBERON:0010115;3.25e-19;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.25e-25!102;UBERON:0003061!4.25e-25!102;UBERON:0002371!6.44e-24!80;UBERON:0002193!1.99e-23!112;UBERON:0001474!1.25e-21!86;UBERON:0002405!6.43e-20!115;UBERON:0004765!4.13e-17!101;UBERON:0001434!4.13e-17!101;UBERON:0007023!4.43e-12!115;UBERON:0003081!2.29e-11!216;UBERON:0002204!7.50e-08!167;UBERON:0000062!2.05e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0002363;3.25e-19;1!UBERON:0002360;2.72e-10;2!UBERON:0000094;2.72e-10;2!UBERON:0010743;2.72e-10;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002363,5.62e-19,1;UBERON:0007645,5.62e-19,1;UBERON:0007647,5.62e-19,1;UBERON:0010115,5.62e-19,1;UBERON:0002371,1.22e-14,76;UBERON:0001474,1.50e-13,82;UBERON:0004765,2.56e-12,90;UBERON:0002405,6.57e-12,93;UBERON:0002390,2.78e-11,98;UBERON:0003061,2.78e-11,98;UBERON:0001434,4.75e-11,100;UBERON:0002193,3.35e-10,108;UBERON:0002360,3.58e-10,2;UBERON:0000094,3.58e-10,2;UBERON:0010743,3.58e-10,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.553995408531877,0.401088894940283,0.217010870715852,8.50878802111712,4.53451132426571,8.75756929956234,1.59938062657521,0,0.727752183563449,0.929716147622738,0,0,0,0.256160706529101,0.709446689665756,0,0,0,0.376484679085209,0,0.898893937780338,0,0,0,0.659702600373432,0.398927315243264,1.27867425159808,0.290209238628584,0.56738522469114,0,0.251248665256743,0,0,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0,0.112328631146495,0.901061357049038,0.64290234678832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72351904261178,0,0.743155811443641,0,0,0,0,0,0,0,0.176096868026452,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.00902836572851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1490322207942,0.211673582723883,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.640358984218058,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.551639951094387,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0.327872630709804,0,0,0,0.1251909307065,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,0,0.992422356778588,0,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0,0,0.913158720509496,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0.0939839179798536,0.0644578879735772,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0,0,0,0.124149428591716,0,0.0636471582781649,0,0.217716747896961,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p15@NISCH | |||
}} |
Revision as of 00:49, 13 September 2013
Short description: | p15@NISCH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_NISCH_5end |
Coexpression cluster: | C67_CD14_Monocytederived_Macrophage_dura_Dendritic_spleen_lung |
Association with transcript: | -4bp_to_uc003deh.3_5end |
EntrezGene: | NISCH |
HGNC: | 18006 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult endothelial progenitor cell | 2.40e-55 | 3 |
macrophage | 1.12e-27 | 6 |
monopoietic cell | 6.65e-19 | 59 |
monocyte | 6.65e-19 | 59 |
monoblast | 6.65e-19 | 59 |
promonocyte | 6.65e-19 | 59 |
macrophage dendritic cell progenitor | 2.79e-18 | 61 |
myeloid lineage restricted progenitor cell | 6.90e-17 | 66 |
granulocyte monocyte progenitor cell | 1.24e-16 | 67 |
myeloid leukocyte | 1.82e-15 | 72 |
myeloid cell | 6.75e-13 | 108 |
common myeloid progenitor | 6.75e-13 | 108 |
nongranular leukocyte | 1.49e-09 | 115 |
defensive cell | 1.71e-09 | 48 |
phagocyte | 1.71e-09 | 48 |
hematopoietic lineage restricted progenitor cell | 3.89e-09 | 120 |
hematopoietic oligopotent progenitor cell | 1.81e-08 | 161 |
hematopoietic multipotent progenitor cell | 1.81e-08 | 161 |
hematopoietic stem cell | 4.35e-08 | 168 |
leukocyte | 5.29e-08 | 136 |
hematopoietic cell | 1.21e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
dura mater | 5.62e-19 | 1 |
future meninx | 5.62e-19 | 1 |
ectomeninx | 5.62e-19 | 1 |
future dura mater | 5.62e-19 | 1 |
bone marrow | 1.22e-14 | 76 |
bone element | 1.50e-13 | 82 |
skeletal element | 2.56e-12 | 90 |
immune system | 6.57e-12 | 93 |
hematopoietic system | 2.78e-11 | 98 |
blood island | 2.78e-11 | 98 |
skeletal system | 4.75e-11 | 100 |
hemolymphoid system | 3.35e-10 | 108 |
meninx | 3.58e-10 | 2 |
membrane organ | 3.58e-10 | 2 |
meningeal cluster | 3.58e-10 | 2 |
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