FFCP PHASE1:Hg19::chr4:62067309..62067334,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23284|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20974|TSSclassifier=S|UniProt=|association_with_transcript=-47bp_to_ENST00000509779_5end|coexpression_cluster_id=C131|description=CAGE_peak_4_at_LPHN3_5end|id=chr4:62067309..62067334,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:8692;4.68e-09;31|ontology_enrichment_disease_v019_2=DOID:8692,2.36e-09,31;DOID:1240,2.06e-07,39|ontology_enrichment_uberon=UBERON:0001017!2.12e-33!82;UBERON:0001049!6.82e-33!57;UBERON:0005068!6.82e-33!57;UBERON:0006241!6.82e-33!57;UBERON:0007135!6.82e-33!57;UBERON:0007023!7.27e-32!115;UBERON:0005743!2.95e-31!86;UBERON:0002020!1.20e-30!34;UBERON:0003528!1.20e-30!34;UBERON:0001893!2.00e-30!34;UBERON:0001869!2.83e-30!32;UBERON:0000073!4.16e-30!94;UBERON:0001016!4.16e-30!94;UBERON:0000955!4.46e-30!69;UBERON:0006238!4.46e-30!69;UBERON:0002619!3.36e-29!22;UBERON:0002791!5.60e-29!33;UBERON:0002616!2.26e-27!59;UBERON:0002780!3.76e-26!41;UBERON:0001890!3.76e-26!41;UBERON:0006240!3.76e-26!41;UBERON:0001950!7.93e-26!20;UBERON:0003080!2.39e-25!42;UBERON:0000956!4.13e-25!25;UBERON:0000203!4.13e-25!25;UBERON:0003075!8.40e-25!86;UBERON:0007284!8.40e-25!86;UBERON:0002346!1.45e-24!90;UBERON:0003056!1.02e-17!61;UBERON:0000153!1.51e-16!129;UBERON:0007811!1.51e-16!129;UBERON:0000924!2.43e-15!173;UBERON:0006601!2.43e-15!173;UBERON:0004121!3.49e-15!169;UBERON:0000033!6.44e-15!123;UBERON:0000200!3.69e-11!6;UBERON:0001871!3.75e-11!7;UBERON:0003076!1.25e-08!15;UBERON:0003057!1.25e-08!15;UBERON:0002308!4.15e-07!9;UBERON:0000125!4.15e-07!9;UBERON:0000349!8.80e-07!5;UBERON:0004733!9.95e-07!12;UBERON:0002028!9.95e-07!12;UBERON:0007277!9.95e-07!12|ontology_enrichment_uberon_v019=UBERON:0000922;3.98e-22;49!UBERON:0002114;1.00e-16;2!UBERON:0002426;6.42e-13;1!UBERON:0003831;6.42e-13;1!UBERON:0003898;6.42e-13;1!UBERON:0004830;6.42e-13;1!UBERON:0003830;6.42e-13;1!UBERON:0005175;6.42e-13;1!UBERON:0001774;6.42e-13;1!UBERON:0001103;6.42e-13;1!UBERON:0002619;8.89e-13;22!UBERON:0000956;2.69e-11;25!UBERON:0000203;2.69e-11;25!UBERON:0002108;2.04e-10;4!UBERON:0001950;2.72e-09;20!UBERON:0002791;1.47e-08;32!UBERON:0001869;1.75e-08;32!UBERON:0005409;2.21e-08;22!UBERON:0003528;6.69e-08;34!UBERON:0002020;6.69e-08;34!UBERON:0001871;9.55e-08;6!UBERON:0001954;4.29e-07;2!UBERON:0005090;4.29e-07;2!UBERON:0001630;4.29e-07;2!UBERON:0003022;4.29e-07;2!UBERON:0002421;4.29e-07;2!UBERON:0002600;4.29e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002114,1.17e-16,2;UBERON:0002426,6.06e-13,1;UBERON:0003831,6.06e-13,1;UBERON:0003898,6.06e-13,1;UBERON:0004830,6.06e-13,1;UBERON:0003830,6.06e-13,1;UBERON:0005175,6.06e-13,1;UBERON:0001774,6.06e-13,1;UBERON:0001103,6.06e-13,1;UBERON:0010084,6.06e-13,1;UBERON:0002619,9.00e-13,22;UBERON:0000956,2.72e-11,25;UBERON:0000203,2.72e-11,25;UBERON:0002108,2.25e-10,4;UBERON:0001950,2.72e-09,20;UBERON:0002791,7.07e-09,32;UBERON:0001869,7.07e-09,32;UBERON:0003528,2.31e-08,34;UBERON:0002020,2.31e-08,34;UBERON:0001893,2.31e-08,34;UBERON:0001871,1.02e-07,6;UBERON:0005409,1.99e-07,25;UBERON:0005090,4.17e-07,2;UBERON:0001630,4.17e-07,2;UBERON:0001954,4.42e-07,2;UBERON:0003022,4.42e-07,2;UBERON:0002421,4.42e-07,2;UBERON:0002600,4.42e-07,2;UBERON:0002780,6.00e-07,41;UBERON:0001890,6.00e-07,41;UBERON:0003080,6.00e-07,41;UBERON:0006240,6.00e-07,41|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0.288732895522148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324621940274555,0.842391534340376,0,0,0,0,1.2847046008296,1.00899853595524,0,0,2.76516687877612,2.90778940260141,1.66849141711908,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0.276283915531148,0,0.613612095012929,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,0.344743373241465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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23284 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20974 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-47bp_to_ENST00000509779_5end | |||
|coexpression_cluster_id=C131 | |||
|description=CAGE_peak_4_at_LPHN3_5end | |||
|id=chr4:62067309..62067334,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;4.68e-09;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.36e-09,31;DOID:1240,2.06e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001017!2.12e-33!82;UBERON:0001049!6.82e-33!57;UBERON:0005068!6.82e-33!57;UBERON:0006241!6.82e-33!57;UBERON:0007135!6.82e-33!57;UBERON:0007023!7.27e-32!115;UBERON:0005743!2.95e-31!86;UBERON:0002020!1.20e-30!34;UBERON:0003528!1.20e-30!34;UBERON:0001893!2.00e-30!34;UBERON:0001869!2.83e-30!32;UBERON:0000073!4.16e-30!94;UBERON:0001016!4.16e-30!94;UBERON:0000955!4.46e-30!69;UBERON:0006238!4.46e-30!69;UBERON:0002619!3.36e-29!22;UBERON:0002791!5.60e-29!33;UBERON:0002616!2.26e-27!59;UBERON:0002780!3.76e-26!41;UBERON:0001890!3.76e-26!41;UBERON:0006240!3.76e-26!41;UBERON:0001950!7.93e-26!20;UBERON:0003080!2.39e-25!42;UBERON:0000956!4.13e-25!25;UBERON:0000203!4.13e-25!25;UBERON:0003075!8.40e-25!86;UBERON:0007284!8.40e-25!86;UBERON:0002346!1.45e-24!90;UBERON:0003056!1.02e-17!61;UBERON:0000153!1.51e-16!129;UBERON:0007811!1.51e-16!129;UBERON:0000924!2.43e-15!173;UBERON:0006601!2.43e-15!173;UBERON:0004121!3.49e-15!169;UBERON:0000033!6.44e-15!123;UBERON:0000200!3.69e-11!6;UBERON:0001871!3.75e-11!7;UBERON:0003076!1.25e-08!15;UBERON:0003057!1.25e-08!15;UBERON:0002308!4.15e-07!9;UBERON:0000125!4.15e-07!9;UBERON:0000349!8.80e-07!5;UBERON:0004733!9.95e-07!12;UBERON:0002028!9.95e-07!12;UBERON:0007277!9.95e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;3.98e-22;49!UBERON:0002114;1.00e-16;2!UBERON:0002426;6.42e-13;1!UBERON:0003831;6.42e-13;1!UBERON:0003898;6.42e-13;1!UBERON:0004830;6.42e-13;1!UBERON:0003830;6.42e-13;1!UBERON:0005175;6.42e-13;1!UBERON:0001774;6.42e-13;1!UBERON:0001103;6.42e-13;1!UBERON:0002619;8.89e-13;22!UBERON:0000956;2.69e-11;25!UBERON:0000203;2.69e-11;25!UBERON:0002108;2.04e-10;4!UBERON:0001950;2.72e-09;20!UBERON:0002791;1.47e-08;32!UBERON:0001869;1.75e-08;32!UBERON:0005409;2.21e-08;22!UBERON:0003528;6.69e-08;34!UBERON:0002020;6.69e-08;34!UBERON:0001871;9.55e-08;6!UBERON:0001954;4.29e-07;2!UBERON:0005090;4.29e-07;2!UBERON:0001630;4.29e-07;2!UBERON:0003022;4.29e-07;2!UBERON:0002421;4.29e-07;2!UBERON:0002600;4.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002114,1.17e-16,2;UBERON:0002426,6.06e-13,1;UBERON:0003831,6.06e-13,1;UBERON:0003898,6.06e-13,1;UBERON:0004830,6.06e-13,1;UBERON:0003830,6.06e-13,1;UBERON:0005175,6.06e-13,1;UBERON:0001774,6.06e-13,1;UBERON:0001103,6.06e-13,1;UBERON:0010084,6.06e-13,1;UBERON:0002619,9.00e-13,22;UBERON:0000956,2.72e-11,25;UBERON:0000203,2.72e-11,25;UBERON:0002108,2.25e-10,4;UBERON:0001950,2.72e-09,20;UBERON:0002791,7.07e-09,32;UBERON:0001869,7.07e-09,32;UBERON:0003528,2.31e-08,34;UBERON:0002020,2.31e-08,34;UBERON:0001893,2.31e-08,34;UBERON:0001871,1.02e-07,6;UBERON:0005409,1.99e-07,25;UBERON:0005090,4.17e-07,2;UBERON:0001630,4.17e-07,2;UBERON:0001954,4.42e-07,2;UBERON:0003022,4.42e-07,2;UBERON:0002421,4.42e-07,2;UBERON:0002600,4.42e-07,2;UBERON:0002780,6.00e-07,41;UBERON:0001890,6.00e-07,41;UBERON:0003080,6.00e-07,41;UBERON:0006240,6.00e-07,41 | |||
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|short_description=p4@LPHN3 | |||
}} |
Revision as of 11:15, 13 September 2013
Short description: | p4@LPHN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LPHN3_5end |
Coexpression cluster: | C131_lung_trachea_Alveolar_thyroid_umbilical_throat_skin |
Association with transcript: | -47bp_to_ENST00000509779_5end |
EntrezGene: | LPHN3 |
HGNC: | 20974 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duodenum | 1.17e-16 | 2 |
chest muscle | 6.06e-13 | 1 |
respiratory system muscle | 6.06e-13 | 1 |
skeletal muscle of trunk | 6.06e-13 | 1 |
respiratory system skeletal muscle | 6.06e-13 | 1 |
thoracic segment muscle | 6.06e-13 | 1 |
chest organ | 6.06e-13 | 1 |
muscle of trunk | 6.06e-13 | 1 |
diaphragm | 6.06e-13 | 1 |
future diaphragm | 6.06e-13 | 1 |
regional part of cerebral cortex | 9.00e-13 | 22 |
cerebral cortex | 2.72e-11 | 25 |
pallium | 2.72e-11 | 25 |
small intestine | 2.25e-10 | 4 |
neocortex | 2.72e-09 | 20 |
regional part of telencephalon | 7.07e-09 | 32 |
cerebral hemisphere | 7.07e-09 | 32 |
brain grey matter | 2.31e-08 | 34 |
gray matter | 2.31e-08 | 34 |
telencephalon | 2.31e-08 | 34 |
temporal lobe | 1.02e-07 | 6 |
gastrointestinal system | 1.99e-07 | 25 |
muscle structure | 4.17e-07 | 2 |
muscle organ | 4.17e-07 | 2 |
Ammon's horn | 4.42e-07 | 2 |
lobe parts of cerebral cortex | 4.42e-07 | 2 |
hippocampal formation | 4.42e-07 | 2 |
limbic lobe | 4.42e-07 | 2 |
regional part of forebrain | 6.00e-07 | 41 |
forebrain | 6.00e-07 | 41 |
anterior neural tube | 6.00e-07 | 41 |
future forebrain | 6.00e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.36e-09 | 31 |
leukemia | 2.06e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.