FFCP PHASE1:Hg19::chr6:30655255..30655282,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=170954|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29413|TSSclassifier=S|UniProt=Q6NYC8|association_with_transcript=-162bp_to_NM_001134870,uc003nra.2_5end|coexpression_cluster_id=C0|description=CAGE_peak_15_at_PPP1R18_5end|id=chr6:30655255..30655282,-|ontology_enrichment_celltype=CL:0000860!6.99e-33!45;CL:0002057!1.09e-32!42;CL:0000766!6.60e-30!76;CL:0000557!3.27e-26!71;CL:0002009!7.27e-24!65;CL:0000839!9.45e-23!70;CL:0002194!1.54e-22!63;CL:0000576!1.54e-22!63;CL:0000040!1.54e-22!63;CL:0000559!1.54e-22!63;CL:0000763!2.68e-22!112;CL:0000049!2.68e-22!112;CL:0000738!1.76e-16!140;CL:0000037!1.46e-12!172;CL:0000566!1.46e-12!172;CL:0002032!1.79e-12!165;CL:0000837!1.79e-12!165;CL:0000988!3.55e-12!182;CL:0002031!2.53e-11!124;CL:0002087!1.15e-10!119;CL:0000094!1.64e-07!8;CL:0002393!9.87e-07!9;CL:0002397!9.87e-07!9|ontology_enrichment_celltype_v019=CL:0000860;1.64e-79;33!CL:0002057;1.64e-79;33!CL:0000473;2.26e-55;39!CL:0000234;2.26e-55;39!CL:0000576;9.29e-43;48!CL:0000766;4.07e-35;69!CL:0000094;6.11e-22;8!CL:0000763;4.86e-18;100!CL:0000081;1.47e-15;11!CL:0002087;1.53e-10;104!CL:0000775;6.58e-10;3!CL:0000738;8.31e-10;136!CL:0000767;1.09e-08;3!CL:0000771;9.35e-07;2|ontology_enrichment_celltype_v019_2=CL:0000860,3.35e-80,42;CL:0002057,3.35e-80,42;CL:0000766,1.20e-75,72;CL:0000473,6.59e-69,48;CL:0000234,6.59e-69,48;CL:0000557,1.23e-63,67;CL:0002009,2.15e-57,61;CL:0000763,4.34e-56,108;CL:0000049,4.34e-56,108;CL:0000839,4.77e-55,66;CL:0002194,4.18e-53,59;CL:0000576,4.18e-53,59;CL:0000040,4.18e-53,59;CL:0000559,4.18e-53,59;CL:0000738,5.59e-40,136;CL:0002032,1.68e-33,161;CL:0000837,1.68e-33,161;CL:0000037,4.49e-33,168;CL:0000988,9.61e-31,177;CL:0002031,4.57e-29,120;CL:0002087,3.52e-24,115;CL:0000094,3.11e-22,8;CL:0000081,9.09e-16,11;CL:0000134,1.93e-10,354;CL:0002320,5.38e-10,361;CL:0000775,6.31e-10,3;CL:0000767,6.85e-09,3;CL:0000219,1.92e-08,386;CL:0000771,7.98e-07,2|ontology_enrichment_development_v019=CL:0002057;1.36e-59;42!CL:0000049;1.55e-14;108|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!3.10e-29!102;UBERON:0003061!3.10e-29!102;UBERON:0002193!2.64e-25!112;UBERON:0002371!5.93e-22!80;UBERON:0001474!1.76e-21!86;UBERON:0004765!1.32e-16!101;UBERON:0001434!1.32e-16!101;UBERON:0002405!1.64e-14!115;UBERON:0003081!3.50e-09!216;UBERON:0000178!9.89e-09!15;UBERON:0000179!9.89e-09!15;UBERON:0000463!9.89e-09!15;UBERON:0000926!4.04e-08!448;UBERON:0004120!4.04e-08!448;UBERON:0006603!4.04e-08!448;UBERON:0002204!1.19e-07!167|ontology_enrichment_uberon_v019=UBERON:0000178;6.06e-08;15!UBERON:0000179;6.06e-08;15!UBERON:0000463;6.06e-08;15|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.80e-57,98;UBERON:0003061,7.80e-57,98;UBERON:0002371,7.20e-55,76;UBERON:0002193,1.84e-50,108;UBERON:0001474,4.40e-50,82;UBERON:0004765,1.10e-44,90;UBERON:0002405,6.70e-43,93;UBERON:0001434,3.79e-39,100;UBERON:0003081,2.34e-22,203;UBERON:0002204,2.64e-20,167;UBERON:0000926,3.12e-12,315;UBERON:0004120,3.12e-12,315;UBERON:0006603,3.12e-12,315;UBERON:0002384,2.16e-09,371;UBERON:0000178,7.06e-08,15;UBERON:0000179,7.06e-08,15;UBERON:0000463,7.06e-08,15|phase1_expression=0,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0.245733936501509,0,0.218441372130172,0.527533956456907,0,0,0,0,0.730310090387373,0,0.369363174230364,0.204000691244253,0.313454721478088,0.286235987131057,0.136874425072884,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,1.96682138424452,1.53531759238885,2.47705797305722,0,0,0.369754010166788,0,0,0,5.53995408531877,3.81034450193269,4.12320654360118,0.223915474239924,0.32389366601898,0.77272670290256,2.61716829803216,2.64513160582167,2.18325655069035,8.13501629169896,10.6903650885675,6.50383378879718,12.0830804775303,9.47794614157672,2.12834006899727,11.721353145045,11.6187243045089,10.8341189275473,4.32957380947991,3.27487380069415,1.34834090667051,11.9372718024652,9.30694178520671,5.11469700639233,3.62836430205388,4.3882004676759,4.26224750532694,17.412554317715,15.3194010666608,6.22822248995575,17.587406567972,12.5155900420848,6.73285418585862,10.8971910474006,9.57521853567668,6.0127853613768,0.633765858935825,0.637812899895131,0.628975936525128,1.34794357375794,0.901061357049038,1.76798145366788,0.855038231223746,0.39783335439818,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,0,2.80254281490768,0,0,0,0,0.668745981562712,0,0,0,0.334231370655521,0.294605907474837,0.221533894583621,0,0.512365278902701,0.260118695119756,0.164437904603676,0,0,0,0,0,0.226618685395132,0.383220493601921,0,0,0.318565414324097,0,0,0,0,0,0,0.821127996921047,0,0.534880391567015,0.144824403882799,0,0,0,0,0,0.289693037921647,0,1.45990461090791,0,0.221729397462564,0.087834785693126,0.261958150995425,0,0,0.649094787309367,0.522389211897802,0.26591592103773,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17859945656816,0,0.112611480483322,0,1.89853131913626,0,2.63560834872127,3.87780264148325,0,0,0.126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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=170954 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29413 | |||
|TSSclassifier=S | |||
|UniProt=Q6NYC8 | |||
|association_with_transcript=-162bp_to_NM_001134870,uc003nra.2_5end | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_15_at_PPP1R18_5end | |||
|id=chr6:30655255..30655282,- | |||
|ontology_enrichment_celltype=CL:0000860!6.99e-33!45;CL:0002057!1.09e-32!42;CL:0000766!6.60e-30!76;CL:0000557!3.27e-26!71;CL:0002009!7.27e-24!65;CL:0000839!9.45e-23!70;CL:0002194!1.54e-22!63;CL:0000576!1.54e-22!63;CL:0000040!1.54e-22!63;CL:0000559!1.54e-22!63;CL:0000763!2.68e-22!112;CL:0000049!2.68e-22!112;CL:0000738!1.76e-16!140;CL:0000037!1.46e-12!172;CL:0000566!1.46e-12!172;CL:0002032!1.79e-12!165;CL:0000837!1.79e-12!165;CL:0000988!3.55e-12!182;CL:0002031!2.53e-11!124;CL:0002087!1.15e-10!119;CL:0000094!1.64e-07!8;CL:0002393!9.87e-07!9;CL:0002397!9.87e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.64e-79;33!CL:0002057;1.64e-79;33!CL:0000473;2.26e-55;39!CL:0000234;2.26e-55;39!CL:0000576;9.29e-43;48!CL:0000766;4.07e-35;69!CL:0000094;6.11e-22;8!CL:0000763;4.86e-18;100!CL:0000081;1.47e-15;11!CL:0002087;1.53e-10;104!CL:0000775;6.58e-10;3!CL:0000738;8.31e-10;136!CL:0000767;1.09e-08;3!CL:0000771;9.35e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.35e-80,42;CL:0002057,3.35e-80,42;CL:0000766,1.20e-75,72;CL:0000473,6.59e-69,48;CL:0000234,6.59e-69,48;CL:0000557,1.23e-63,67;CL:0002009,2.15e-57,61;CL:0000763,4.34e-56,108;CL:0000049,4.34e-56,108;CL:0000839,4.77e-55,66;CL:0002194,4.18e-53,59;CL:0000576,4.18e-53,59;CL:0000040,4.18e-53,59;CL:0000559,4.18e-53,59;CL:0000738,5.59e-40,136;CL:0002032,1.68e-33,161;CL:0000837,1.68e-33,161;CL:0000037,4.49e-33,168;CL:0000988,9.61e-31,177;CL:0002031,4.57e-29,120;CL:0002087,3.52e-24,115;CL:0000094,3.11e-22,8;CL:0000081,9.09e-16,11;CL:0000134,1.93e-10,354;CL:0002320,5.38e-10,361;CL:0000775,6.31e-10,3;CL:0000767,6.85e-09,3;CL:0000219,1.92e-08,386;CL:0000771,7.98e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002057;1.36e-59;42!CL:0000049;1.55e-14;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.10e-29!102;UBERON:0003061!3.10e-29!102;UBERON:0002193!2.64e-25!112;UBERON:0002371!5.93e-22!80;UBERON:0001474!1.76e-21!86;UBERON:0004765!1.32e-16!101;UBERON:0001434!1.32e-16!101;UBERON:0002405!1.64e-14!115;UBERON:0003081!3.50e-09!216;UBERON:0000178!9.89e-09!15;UBERON:0000179!9.89e-09!15;UBERON:0000463!9.89e-09!15;UBERON:0000926!4.04e-08!448;UBERON:0004120!4.04e-08!448;UBERON:0006603!4.04e-08!448;UBERON:0002204!1.19e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.06e-08;15!UBERON:0000179;6.06e-08;15!UBERON:0000463;6.06e-08;15 | |||
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| |||
|short_description=p15@PPP1R18 | |||
}} |
Revision as of 20:03, 13 September 2013
Short description: | p15@PPP1R18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_PPP1R18_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -162bp_to_NM_001134870, uc003nra.2_5end |
EntrezGene: | PPP1R18 |
HGNC: | 29413 |
UniProt: | Q6NYC8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.35e-80 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.35e-80 | 42 |
myeloid leukocyte | 1.20e-75 | 72 |
defensive cell | 6.59e-69 | 48 |
phagocyte | 6.59e-69 | 48 |
granulocyte monocyte progenitor cell | 1.23e-63 | 67 |
macrophage dendritic cell progenitor | 2.15e-57 | 61 |
myeloid cell | 4.34e-56 | 108 |
common myeloid progenitor | 4.34e-56 | 108 |
myeloid lineage restricted progenitor cell | 4.77e-55 | 66 |
monopoietic cell | 4.18e-53 | 59 |
monocyte | 4.18e-53 | 59 |
monoblast | 4.18e-53 | 59 |
promonocyte | 4.18e-53 | 59 |
leukocyte | 5.59e-40 | 136 |
hematopoietic oligopotent progenitor cell | 1.68e-33 | 161 |
hematopoietic multipotent progenitor cell | 1.68e-33 | 161 |
hematopoietic stem cell | 4.49e-33 | 168 |
hematopoietic cell | 9.61e-31 | 177 |
hematopoietic lineage restricted progenitor cell | 4.57e-29 | 120 |
nongranular leukocyte | 3.52e-24 | 115 |
granulocyte | 3.11e-22 | 8 |
blood cell | 9.09e-16 | 11 |
mesenchymal cell | 1.93e-10 | 354 |
connective tissue cell | 5.38e-10 | 361 |
neutrophil | 6.31e-10 | 3 |
basophil | 6.85e-09 | 3 |
motile cell | 1.92e-08 | 386 |
eosinophil | 7.98e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.80e-57 | 98 |
blood island | 7.80e-57 | 98 |
bone marrow | 7.20e-55 | 76 |
hemolymphoid system | 1.84e-50 | 108 |
bone element | 4.40e-50 | 82 |
skeletal element | 1.10e-44 | 90 |
immune system | 6.70e-43 | 93 |
skeletal system | 3.79e-39 | 100 |
lateral plate mesoderm | 2.34e-22 | 203 |
musculoskeletal system | 2.64e-20 | 167 |
mesoderm | 3.12e-12 | 315 |
mesoderm-derived structure | 3.12e-12 | 315 |
presumptive mesoderm | 3.12e-12 | 315 |
connective tissue | 2.16e-09 | 371 |
blood | 7.06e-08 | 15 |
haemolymphatic fluid | 7.06e-08 | 15 |
organism substance | 7.06e-08 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.