FFCP PHASE1:Hg19::chr7:87856303..87856312,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6717|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11292|TSSclassifier=S|UniProt=A8MTH6|association_with_transcript=0bp_to_ENST00000394641,NM_198901,uc003ujr.1,uc011khh.1_5end|coexpression_cluster_id=C190|description=CAGE_peak_3_at_SRI_5end|id=chr7:87856303..87856312,-|ontology_enrichment_celltype=CL:0000066!5.89e-07!254|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0008947;6.44e-22;29!UBERON:0006595;1.67e-09;86!UBERON:0001045;4.57e-07;1|ontology_enrichment_disease=DOID:305!1.65e-16!106;DOID:0050687!2.24e-12!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,9.37e-14,106;DOID:0050687,3.19e-09,143|ontology_enrichment_uberon=UBERON:0001737!3.36e-22!9;UBERON:0004921!1.09e-16!129;UBERON:0004185!1.09e-16!129;UBERON:0001007!8.10e-16!155;UBERON:0001555!8.10e-16!155;UBERON:0007026!8.10e-16!155;UBERON:0004119!1.37e-13!169;UBERON:0000925!1.37e-13!169;UBERON:0006595!1.37e-13!169;UBERON:0000077!6.35e-12!130;UBERON:0001557!8.91e-12!19;UBERON:0008947!8.40e-11!38;UBERON:0003258!8.40e-11!38;UBERON:0000160!3.15e-10!27;UBERON:0001041!9.51e-09!98;UBERON:0003104!9.73e-09!238;UBERON:0009142!9.73e-09!238;UBERON:0005409!1.11e-08!35;UBERON:0002294!3.98e-08!7;UBERON:0001173!3.98e-08!7;UBERON:0004912!3.98e-08!7;UBERON:0000059!6.84e-08!11;UBERON:0000065!7.19e-08!53;UBERON:0000062!3.20e-07!511;UBERON:0000481!4.35e-07!347|ontology_enrichment_uberon_v019=UBERON:0001737;1.10e-50;9!UBERON:0001557;1.10e-50;9!UBERON:0000160;5.92e-20;17!UBERON:0005409;2.37e-15;22!UBERON:0000072;1.83e-13;37!UBERON:0000059;3.31e-13;11!UBERON:0000065;1.67e-12;44!UBERON:0002108;1.59e-11;4!UBERON:0001155;7.32e-11;9!UBERON:0004921;9.48e-09;33!UBERON:0001004;1.08e-08;65!UBERON:0001154;4.57e-07;1!UBERON:0001153;4.57e-07;1!UBERON:0009854;4.57e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0001737,8.76e-51,9;UBERON:0001557,5.73e-29,19;UBERON:0004921,2.13e-25,118;UBERON:0001007,1.37e-21,145;UBERON:0001555,1.37e-21,145;UBERON:0007026,1.37e-21,145;UBERON:0000160,6.23e-20,17;UBERON:0004119,4.44e-19,160;UBERON:0000925,4.44e-19,160;UBERON:0006595,4.44e-19,160;UBERON:0008947,2.91e-16,38;UBERON:0003258,2.91e-16,38;UBERON:0001041,1.25e-13,87;UBERON:0005409,2.00e-13,25;UBERON:0000059,3.57e-13,11;UBERON:0000065,4.44e-13,54;UBERON:0000072,6.79e-13,47;UBERON:0011216,5.07e-12,223;UBERON:0002108,1.54e-11,4;UBERON:0001155,7.70e-11,9;UBERON:0001004,6.41e-09,74;UBERON:0001154,4.85e-07,1;UBERON:0001153,4.85e-07,1;UBERON:0001045,4.85e-07,1;UBERON:0001048,8.67e-07,160|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6363964029086,4.88895601226495,5.54325368732009,7.72057809126758,4.79334777003293,4.27087114399974,7.14605933248871,5.101758093259,3.46272441251751,0,0,0,0,0,6.87979051674338,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0.831076008928724,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,2.16530741786592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.1583837730658,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0.19924798825107,4.14425873296722,0,0,0,0,0.359473404589307,12.1734398779414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0,0.0897576444097721,0,0.31900115973192,0,2.13213910407454,0,0,0,0,0,0,0,0,0,1.14262965711403,0,0,17.9147147594131,7.07660516026713,51.3265321744245,0,0,0,0,0,0,0,0.391329237864179,0,0,10.8891644443797,0,0,0,0,0,0,0,0,0,0,0,0,0.69647365264322,0.698906672968121,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0,0,0,2.73771935828724,0.0801588202515337,0,0,0.72045208577053,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,3.81035807563014,0,0,0,0,0,0.213574825135389,2.67247318669432,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6717 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11292 | |||
|TSSclassifier=S | |||
|UniProt=A8MTH6 | |||
|association_with_transcript=0bp_to_ENST00000394641,NM_198901,uc003ujr.1,uc011khh.1_5end | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_3_at_SRI_5end | |||
|id=chr7:87856303..87856312,- | |||
|ontology_enrichment_celltype=CL:0000066!5.89e-07!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.44e-22;29!UBERON:0006595;1.67e-09;86!UBERON:0001045;4.57e-07;1 | |||
|ontology_enrichment_disease=DOID:305!1.65e-16!106;DOID:0050687!2.24e-12!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.37e-14,106;DOID:0050687,3.19e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.36e-22!9;UBERON:0004921!1.09e-16!129;UBERON:0004185!1.09e-16!129;UBERON:0001007!8.10e-16!155;UBERON:0001555!8.10e-16!155;UBERON:0007026!8.10e-16!155;UBERON:0004119!1.37e-13!169;UBERON:0000925!1.37e-13!169;UBERON:0006595!1.37e-13!169;UBERON:0000077!6.35e-12!130;UBERON:0001557!8.91e-12!19;UBERON:0008947!8.40e-11!38;UBERON:0003258!8.40e-11!38;UBERON:0000160!3.15e-10!27;UBERON:0001041!9.51e-09!98;UBERON:0003104!9.73e-09!238;UBERON:0009142!9.73e-09!238;UBERON:0005409!1.11e-08!35;UBERON:0002294!3.98e-08!7;UBERON:0001173!3.98e-08!7;UBERON:0004912!3.98e-08!7;UBERON:0000059!6.84e-08!11;UBERON:0000065!7.19e-08!53;UBERON:0000062!3.20e-07!511;UBERON:0000481!4.35e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.10e-50;9!UBERON:0001557;1.10e-50;9!UBERON:0000160;5.92e-20;17!UBERON:0005409;2.37e-15;22!UBERON:0000072;1.83e-13;37!UBERON:0000059;3.31e-13;11!UBERON:0000065;1.67e-12;44!UBERON:0002108;1.59e-11;4!UBERON:0001155;7.32e-11;9!UBERON:0004921;9.48e-09;33!UBERON:0001004;1.08e-08;65!UBERON:0001154;4.57e-07;1!UBERON:0001153;4.57e-07;1!UBERON:0009854;4.57e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,8.76e-51,9;UBERON:0001557,5.73e-29,19;UBERON:0004921,2.13e-25,118;UBERON:0001007,1.37e-21,145;UBERON:0001555,1.37e-21,145;UBERON:0007026,1.37e-21,145;UBERON:0000160,6.23e-20,17;UBERON:0004119,4.44e-19,160;UBERON:0000925,4.44e-19,160;UBERON:0006595,4.44e-19,160;UBERON:0008947,2.91e-16,38;UBERON:0003258,2.91e-16,38;UBERON:0001041,1.25e-13,87;UBERON:0005409,2.00e-13,25;UBERON:0000059,3.57e-13,11;UBERON:0000065,4.44e-13,54;UBERON:0000072,6.79e-13,47;UBERON:0011216,5.07e-12,223;UBERON:0002108,1.54e-11,4;UBERON:0001155,7.70e-11,9;UBERON:0001004,6.41e-09,74;UBERON:0001154,4.85e-07,1;UBERON:0001153,4.85e-07,1;UBERON:0001045,4.85e-07,1;UBERON:0001048,8.67e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.6363964029086,4.88895601226495,5.54325368732009,7.72057809126758,4.79334777003293,4.27087114399974,7.14605933248871,5.101758093259,3.46272441251751,0,0,0,0,0,6.87979051674338,4.13552934676983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.541892875087706,0,0,0.831076008928724,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,2.16530741786592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.1583837730658,0,0,0,0,0.47748896947538,0,0,0,0,0,0,0,0.19924798825107,4.14425873296722,0,0,0,0,0.359473404589307,12.1734398779414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0.0769502585037971,0,0,0.0897576444097721,0,0.31900115973192,0,2.13213910407454,0,0,0,0,0,0,0,0,0,1.14262965711403,0,0,17.9147147594131,7.07660516026713,51.3265321744245,0,0,0,0,0,0,0,0.391329237864179,0,0,10.8891644443797,0,0,0,0,0,0,0,0,0,0,0,0,0.69647365264322,0.698906672968121,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0,0,0,2.73771935828724,0.0801588202515337,0,0,0.72045208577053,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.226624183040251,3.81035807563014,0,0,0,0,0,0.213574825135389,2.67247318669432,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0.438568099157414,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0.245772908753719,0.422624246717254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,20.6790942409105,0,0,0,0.376051641746286,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18193840883968,0,0.156986185701028,0,1.12108865325516,0.913158720509496,3.0229862770607,0.9555033757741,0,0,0,0,0,0,0,0,0,0,0,0,0.4582137370881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.1935169810553,19.2332413243482,0,0,0,0,0,0.4226557275834,0,0,0,0,5.35661815816973,0,3.45037876763424,0,0,0,0,0,0,8.99345628876181,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0.162806537221949,0,0,0.359300808426348,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@SRI | |||
}} |
Revision as of 02:19, 14 September 2013
Short description: | p3@SRI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SRI_5end |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | 0bp_to_ENST00000394641, NM_198901, uc003ujr.1, uc011khh.1_5end |
EntrezGene: | SRI |
HGNC: | 11292 |
UniProt: | A8MTH6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 8.76e-51 | 9 |
upper respiratory tract | 5.73e-29 | 19 |
subdivision of digestive tract | 2.13e-25 | 118 |
digestive system | 1.37e-21 | 145 |
digestive tract | 1.37e-21 | 145 |
primitive gut | 1.37e-21 | 145 |
intestine | 6.23e-20 | 17 |
endoderm-derived structure | 4.44e-19 | 160 |
endoderm | 4.44e-19 | 160 |
presumptive endoderm | 4.44e-19 | 160 |
respiratory primordium | 2.91e-16 | 38 |
endoderm of foregut | 2.91e-16 | 38 |
foregut | 1.25e-13 | 87 |
gastrointestinal system | 2.00e-13 | 25 |
large intestine | 3.57e-13 | 11 |
respiratory tract | 4.44e-13 | 54 |
segment of respiratory tract | 6.79e-13 | 47 |
organ system subdivision | 5.07e-12 | 223 |
small intestine | 1.54e-11 | 4 |
colon | 7.70e-11 | 9 |
respiratory system | 6.41e-09 | 74 |
vermiform appendix | 4.85e-07 | 1 |
caecum | 4.85e-07 | 1 |
midgut | 4.85e-07 | 1 |
primordium | 8.67e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.37e-14 | 106 |
cell type cancer | 3.19e-09 | 143 |
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