FFCP PHASE1:Hg19::chr8:22550456..22550461,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1960|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3240|TSSclassifier=S|UniProt=|association_with_transcript=-226bp_to_ENST00000524088_5end|coexpression_cluster_id=C17|description=CAGE_peak_13_at_EGR3_5end|id=chr8:22550456..22550461,-|ontology_enrichment_celltype=CL:0002057!1.02e-20!42;CL:0000860!4.82e-19!45;CL:0000839!7.93e-19!70;CL:0000766!8.71e-19!76;CL:0000557!1.74e-18!71;CL:0002274!1.38e-17!5;CL:0000457!1.38e-17!5;CL:0002191!1.38e-17!5;CL:0000097!1.38e-17!5;CL:0000831!1.38e-17!5;CL:0002028!1.38e-17!5;CL:0002194!4.12e-12!63;CL:0000576!4.12e-12!63;CL:0000040!4.12e-12!63;CL:0000559!4.12e-12!63;CL:0002009!1.28e-11!65;CL:0000763!6.21e-11!112;CL:0000049!6.21e-11!112;CL:0000163!1.28e-09!9;CL:0002031!2.80e-09!124;CL:0000738!1.55e-08!140|ontology_enrichment_celltype_v019=CL:0000473;1.77e-12;39!CL:0000234;1.77e-12;39!CL:0000860;1.77e-12;33!CL:0002057;1.77e-12;33!CL:0000097;2.66e-11;5!CL:0000766;1.95e-08;69!CL:0000576;2.55e-07;48!CL:0000163;7.48e-07;9|ontology_enrichment_celltype_v019_2=CL:0000839,1.15e-12,66;CL:0000557,1.71e-12,67;CL:0000766,1.07e-11,72;CL:0000860,1.73e-11,42;CL:0002057,1.73e-11,42;CL:0000097,2.66e-11,5;CL:0002028,2.66e-11,5;CL:0000473,3.64e-10,48;CL:0000234,3.64e-10,48;CL:0002194,2.64e-08,59;CL:0000576,2.64e-08,59;CL:0000040,2.64e-08,59;CL:0000559,2.64e-08,59;CL:0000763,4.22e-08,108;CL:0000049,4.22e-08,108;CL:0002009,4.61e-08,61;CL:0002031,2.26e-07,120;CL:0000163,7.48e-07,9|ontology_enrichment_development_v019=CL:0002057;2.21e-10;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001869!1.20e-18!32;UBERON:0001893!2.22e-17!34;UBERON:0002371!8.54e-16!80;UBERON:0001474!9.12e-16!86;UBERON:0002791!1.25e-15!33;UBERON:0002619!4.25e-15!22;UBERON:0002020!4.30e-15!34;UBERON:0003528!4.30e-15!34;UBERON:0002780!6.64e-14!41;UBERON:0001890!6.64e-14!41;UBERON:0006240!6.64e-14!41;UBERON:0001950!7.81e-14!20;UBERON:0003080!1.68e-13!42;UBERON:0000200!2.25e-13!6;UBERON:0000956!4.32e-13!25;UBERON:0000203!4.32e-13!25;UBERON:0004765!1.37e-12!101;UBERON:0001434!1.37e-12!101;UBERON:0002390!2.04e-12!102;UBERON:0003061!2.04e-12!102;UBERON:0002193!8.16e-11!112;UBERON:0002771!1.34e-10!3;UBERON:0001049!1.68e-10!57;UBERON:0005068!1.68e-10!57;UBERON:0006241!1.68e-10!57;UBERON:0007135!1.68e-10!57;UBERON:0002405!2.18e-10!115;UBERON:0002616!4.94e-10!59;UBERON:0003056!1.32e-09!61;UBERON:0000955!3.48e-09!69;UBERON:0006238!3.48e-09!69;UBERON:0001017!2.67e-08!82;UBERON:0003075!8.54e-08!86;UBERON:0007284!8.54e-08!86;UBERON:0005743!9.59e-08!86;UBERON:0007023!1.47e-07!115;UBERON:0002346!2.77e-07!90;UBERON:0002204!6.60e-07!167|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.92e-11,76;UBERON:0001474,2.17e-10,82;UBERON:0004765,1.51e-09,90;UBERON:0002405,2.87e-09,93;UBERON:0002390,7.68e-09,98;UBERON:0003061,7.68e-09,98;UBERON:0001434,1.11e-08,100;UBERON:0002193,4.22e-08,108|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0.929119112685311,0,0,0.236482229888585,1.03423704220986,1.93645405075148,0,0.376484679085209,0.545812300115692,0.449446968890169,0.918251677112708,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.8826118063351,0.088048434013226,0.621984346622316,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2440525298039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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3240 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-226bp_to_ENST00000524088_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_13_at_EGR3_5end | |||
|id=chr8:22550456..22550461,- | |||
|ontology_enrichment_celltype=CL:0002057!1.02e-20!42;CL:0000860!4.82e-19!45;CL:0000839!7.93e-19!70;CL:0000766!8.71e-19!76;CL:0000557!1.74e-18!71;CL:0002274!1.38e-17!5;CL:0000457!1.38e-17!5;CL:0002191!1.38e-17!5;CL:0000097!1.38e-17!5;CL:0000831!1.38e-17!5;CL:0002028!1.38e-17!5;CL:0002194!4.12e-12!63;CL:0000576!4.12e-12!63;CL:0000040!4.12e-12!63;CL:0000559!4.12e-12!63;CL:0002009!1.28e-11!65;CL:0000763!6.21e-11!112;CL:0000049!6.21e-11!112;CL:0000163!1.28e-09!9;CL:0002031!2.80e-09!124;CL:0000738!1.55e-08!140 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.77e-12;39!CL:0000234;1.77e-12;39!CL:0000860;1.77e-12;33!CL:0002057;1.77e-12;33!CL:0000097;2.66e-11;5!CL:0000766;1.95e-08;69!CL:0000576;2.55e-07;48!CL:0000163;7.48e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,1.15e-12,66;CL:0000557,1.71e-12,67;CL:0000766,1.07e-11,72;CL:0000860,1.73e-11,42;CL:0002057,1.73e-11,42;CL:0000097,2.66e-11,5;CL:0002028,2.66e-11,5;CL:0000473,3.64e-10,48;CL:0000234,3.64e-10,48;CL:0002194,2.64e-08,59;CL:0000576,2.64e-08,59;CL:0000040,2.64e-08,59;CL:0000559,2.64e-08,59;CL:0000763,4.22e-08,108;CL:0000049,4.22e-08,108;CL:0002009,4.61e-08,61;CL:0002031,2.26e-07,120;CL:0000163,7.48e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;2.21e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!1.20e-18!32;UBERON:0001893!2.22e-17!34;UBERON:0002371!8.54e-16!80;UBERON:0001474!9.12e-16!86;UBERON:0002791!1.25e-15!33;UBERON:0002619!4.25e-15!22;UBERON:0002020!4.30e-15!34;UBERON:0003528!4.30e-15!34;UBERON:0002780!6.64e-14!41;UBERON:0001890!6.64e-14!41;UBERON:0006240!6.64e-14!41;UBERON:0001950!7.81e-14!20;UBERON:0003080!1.68e-13!42;UBERON:0000200!2.25e-13!6;UBERON:0000956!4.32e-13!25;UBERON:0000203!4.32e-13!25;UBERON:0004765!1.37e-12!101;UBERON:0001434!1.37e-12!101;UBERON:0002390!2.04e-12!102;UBERON:0003061!2.04e-12!102;UBERON:0002193!8.16e-11!112;UBERON:0002771!1.34e-10!3;UBERON:0001049!1.68e-10!57;UBERON:0005068!1.68e-10!57;UBERON:0006241!1.68e-10!57;UBERON:0007135!1.68e-10!57;UBERON:0002405!2.18e-10!115;UBERON:0002616!4.94e-10!59;UBERON:0003056!1.32e-09!61;UBERON:0000955!3.48e-09!69;UBERON:0006238!3.48e-09!69;UBERON:0001017!2.67e-08!82;UBERON:0003075!8.54e-08!86;UBERON:0007284!8.54e-08!86;UBERON:0005743!9.59e-08!86;UBERON:0007023!1.47e-07!115;UBERON:0002346!2.77e-07!90;UBERON:0002204!6.60e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.92e-11,76;UBERON:0001474,2.17e-10,82;UBERON:0004765,1.51e-09,90;UBERON:0002405,2.87e-09,93;UBERON:0002390,7.68e-09,98;UBERON:0003061,7.68e-09,98;UBERON:0001434,1.11e-08,100;UBERON:0002193,4.22e-08,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0.929119112685311,0,0,0.236482229888585,1.03423704220986,1.93645405075148,0,0.376484679085209,0.545812300115692,0.449446968890169,0.918251677112708,0.320929027076094,0,0.329851300186716,0,0,0,0,0,0,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.8826118063351,0.088048434013226,0.621984346622316,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422250816255987,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0.438770794307945,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0.136203406111576,0,0,0,0,0,0.182248669974074,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.1251909307065,0,0,0.0620964029413835,0,0,0,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0.151230923763239,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0.205116364240755,0,0.207471757392654,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639701945702943,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p13@EGR3 | |||
}} |
Revision as of 04:39, 14 September 2013
Short description: | p13@EGR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_EGR3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -226bp_to_ENST00000524088_5end |
EntrezGene: | EGR3 |
HGNC: | 3240 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 1.15e-12 | 66 |
granulocyte monocyte progenitor cell | 1.71e-12 | 67 |
myeloid leukocyte | 1.07e-11 | 72 |
classical monocyte | 1.73e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.73e-11 | 42 |
mast cell | 2.66e-11 | 5 |
basophil mast progenitor cell | 2.66e-11 | 5 |
defensive cell | 3.64e-10 | 48 |
phagocyte | 3.64e-10 | 48 |
monopoietic cell | 2.64e-08 | 59 |
monocyte | 2.64e-08 | 59 |
monoblast | 2.64e-08 | 59 |
promonocyte | 2.64e-08 | 59 |
myeloid cell | 4.22e-08 | 108 |
common myeloid progenitor | 4.22e-08 | 108 |
macrophage dendritic cell progenitor | 4.61e-08 | 61 |
hematopoietic lineage restricted progenitor cell | 2.26e-07 | 120 |
endocrine cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.92e-11 | 76 |
bone element | 2.17e-10 | 82 |
skeletal element | 1.51e-09 | 90 |
immune system | 2.87e-09 | 93 |
hematopoietic system | 7.68e-09 | 98 |
blood island | 7.68e-09 | 98 |
skeletal system | 1.11e-08 | 100 |
hemolymphoid system | 4.22e-08 | 108 |
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