FFCP PHASE1:Hg19::chrX:135863137..135863146,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9459|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=685|TSSclassifier=N|UniProt=F5H8B2,Q15052,Q8N4Q3|association_with_transcript=356bp_to_ENST00000535736,NM_004840,uc004fab.2_5end|coexpression_cluster_id=C1020|description=CAGE_peak_11_at_ARHGEF6_5end|id=chrX:135863137..135863146,-|ontology_enrichment_celltype=CL:0000037!5.79e-66!172;CL:0000566!5.79e-66!172;CL:0002032!1.05e-61!165;CL:0000837!1.05e-61!165;CL:0000988!1.31e-59!182;CL:0000738!2.84e-55!140;CL:0002031!4.68e-48!124;CL:0002087!2.73e-47!119;CL:0000763!1.79e-37!112;CL:0000049!1.79e-37!112;CL:0000766!5.60e-33!76;CL:0000839!1.99e-27!70;CL:0000557!5.43e-26!71;CL:0002194!6.22e-23!63;CL:0000576!6.22e-23!63;CL:0000040!6.22e-23!63;CL:0000559!6.22e-23!63;CL:0002009!1.13e-21!65;CL:0000542!7.74e-21!53;CL:0000051!7.74e-21!53;CL:0000838!1.45e-20!52;CL:0002057!9.88e-18!42;CL:0000860!1.05e-15!45;CL:0000134!1.08e-15!358;CL:0002320!1.37e-14!365;CL:0000084!9.50e-13!25;CL:0000827!9.50e-13!25;CL:0000791!1.16e-11!18;CL:0000789!1.16e-11!18;CL:0002420!1.16e-11!18;CL:0002419!1.16e-11!18;CL:0000790!1.16e-11!18;CL:0000219!1.41e-11!390;CL:0000048!2.15e-09!430;CL:0000723!9.59e-09!436;CL:0000094!2.29e-08!8;CL:0000236!2.50e-08!14;CL:0000034!2.52e-08!444;CL:0002393!5.42e-08!9;CL:0002397!5.42e-08!9;CL:0000945!1.25e-07!24;CL:0000826!1.25e-07!24;CL:0000625!8.73e-07!11|ontology_enrichment_celltype_v019=CL:0000094;1.10e-14;8!CL:0000081;2.34e-10;11!CL:0000763;1.89e-09;100!CL:0000775;2.29e-08;3!CL:0000766;7.10e-08;69!CL:0000898;2.04e-07;3!CL:0000576;2.95e-07;48!CL:0002393;5.85e-07;6!CL:0002397;5.85e-07;6|ontology_enrichment_celltype_v019_2=CL:0000037,1.89e-35,168;CL:0000988,7.08e-33,177;CL:0002032,9.82e-33,161;CL:0000837,9.82e-33,161;CL:0000763,3.86e-28,108;CL:0000049,3.86e-28,108;CL:0000738,3.84e-25,136;CL:0000766,8.19e-22,72;CL:0002031,5.52e-17,120;CL:0002087,8.93e-17,115;CL:0000094,5.77e-15,8;CL:0000557,5.96e-14,67;CL:0000839,8.22e-13,66;CL:0002194,1.28e-10,59;CL:0000576,1.28e-10,59;CL:0000040,1.28e-10,59;CL:0000559,1.28e-10,59;CL:0000081,1.48e-10,11;CL:0000134,2.34e-10,354;CL:0002009,4.05e-10,61;CL:0002320,7.04e-10,361;CL:0002393,2.67e-09,9;CL:0002397,2.67e-09,9;CL:0000473,1.16e-08,48;CL:0000234,1.16e-08,48;CL:0000775,1.25e-08,3;CL:0000219,3.26e-08,386;CL:0000860,9.44e-08,42;CL:0002057,9.44e-08,42;CL:0000898,2.56e-07,3|ontology_enrichment_development_v019=CL:0000049;7.11e-09;108|ontology_enrichment_disease=DOID:1240!1.21e-11!39;DOID:2531!7.89e-10!51;DOID:0060083!7.89e-10!51;DOID:8692!1.06e-08!31|ontology_enrichment_disease_v019=DOID:8692;5.64e-10;31!DOID:1240;2.90e-09;39|ontology_enrichment_disease_v019_2=DOID:1240,2.30e-10,39;DOID:8692,3.01e-10,31;DOID:2531,2.70e-08,51;DOID:0060083,2.70e-08,51|ontology_enrichment_uberon=UBERON:0002390!5.00e-25!102;UBERON:0003061!5.00e-25!102;UBERON:0002193!2.40e-22!112;UBERON:0002371!3.97e-22!80;UBERON:0001474!4.62e-20!86;UBERON:0002405!4.29e-16!115;UBERON:0004765!3.26e-14!101;UBERON:0001434!3.26e-14!101;UBERON:0002384!5.23e-14!375|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.63e-16,98;UBERON:0003061,1.63e-16,98;UBERON:0002193,3.24e-14,108;UBERON:0002371,6.36e-13,76;UBERON:0002405,1.03e-12,93;UBERON:0001474,1.60e-11,82;UBERON:0004765,5.89e-10,90;UBERON:0002384,3.13e-09,371;UBERON:0001434,2.28e-08,100;UBERON:0003351,9.21e-07,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.534893840235659,0.492603536699674,0.629686250509434,0.393364276848904,2.68680578668049,1.39334510984468,0,0,0,0,0.426507697462265,3.52320527201817,2.21598163412751,0.401088894940283,0.217010870715852,0.895661896959697,0.32389366601898,1.80302897343931,0.436194716338694,1.13362783106643,0.242584061187816,0.232429036905685,0,0.309706370895104,0.28769239232215,0.768482119587302,1.41889337933151,0.689491361473237,0.645484683583826,0,0.188242339542605,0,0,0.612167784741805,0.641858054152187,1.27867425159808,0.659702600373432,0.398927315243264,0.852449501065388,0.290209238628584,0,0,0.502497330513487,1.0429658368404,0.65156653411535,0.605399502633369,1.10483290796269,0.316462387440884,2.32380814943136,2.33864729961548,1.67726916406701,2.47122988522289,1.95229960693958,2.25015821375912,0.855038231223746,1.59133341759272,1.46131323011707,0,2.18455444504853,0.889509253863555,0.853460445133014,1.20118796110804,0.574752439954483,0.661044872784862,2.86216126360609,0.569212969109448,0.587237189370939,0.764546456250458,0,0,1.31692042387539,1.96709770113833,0.786021525498329,0.616804496998528,2.84217042164153,1.62961133316795,3.31413464014313,0,2.89667187901451,1.17842362989935,1.55073726208535,2.97884250141517,1.66518715643378,2.34106825607781,2.30213066445147,1.65810010671509,2.89803085735052,2.96573126324121,1.87278579662799,1.04535523804977,3.17266159553185,1.14966148080576,2.06176467289578,0.759059076058509,0.95569624297229,0.651083453856419,0.950452044448374,0.602300476311091,0.511946444617674,1.24930726552346,2.60454977248419,0,1.00803371612366,0.267440195783507,0.7241220194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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9459 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=685 | |||
|TSSclassifier=N | |||
|UniProt=F5H8B2,Q15052,Q8N4Q3 | |||
|association_with_transcript=356bp_to_ENST00000535736,NM_004840,uc004fab.2_5end | |||
|coexpression_cluster_id=C1020 | |||
|description=CAGE_peak_11_at_ARHGEF6_5end | |||
|id=chrX:135863137..135863146,- | |||
|ontology_enrichment_celltype=CL:0000037!5.79e-66!172;CL:0000566!5.79e-66!172;CL:0002032!1.05e-61!165;CL:0000837!1.05e-61!165;CL:0000988!1.31e-59!182;CL:0000738!2.84e-55!140;CL:0002031!4.68e-48!124;CL:0002087!2.73e-47!119;CL:0000763!1.79e-37!112;CL:0000049!1.79e-37!112;CL:0000766!5.60e-33!76;CL:0000839!1.99e-27!70;CL:0000557!5.43e-26!71;CL:0002194!6.22e-23!63;CL:0000576!6.22e-23!63;CL:0000040!6.22e-23!63;CL:0000559!6.22e-23!63;CL:0002009!1.13e-21!65;CL:0000542!7.74e-21!53;CL:0000051!7.74e-21!53;CL:0000838!1.45e-20!52;CL:0002057!9.88e-18!42;CL:0000860!1.05e-15!45;CL:0000134!1.08e-15!358;CL:0002320!1.37e-14!365;CL:0000084!9.50e-13!25;CL:0000827!9.50e-13!25;CL:0000791!1.16e-11!18;CL:0000789!1.16e-11!18;CL:0002420!1.16e-11!18;CL:0002419!1.16e-11!18;CL:0000790!1.16e-11!18;CL:0000219!1.41e-11!390;CL:0000048!2.15e-09!430;CL:0000723!9.59e-09!436;CL:0000094!2.29e-08!8;CL:0000236!2.50e-08!14;CL:0000034!2.52e-08!444;CL:0002393!5.42e-08!9;CL:0002397!5.42e-08!9;CL:0000945!1.25e-07!24;CL:0000826!1.25e-07!24;CL:0000625!8.73e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000094;1.10e-14;8!CL:0000081;2.34e-10;11!CL:0000763;1.89e-09;100!CL:0000775;2.29e-08;3!CL:0000766;7.10e-08;69!CL:0000898;2.04e-07;3!CL:0000576;2.95e-07;48!CL:0002393;5.85e-07;6!CL:0002397;5.85e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.89e-35,168;CL:0000988,7.08e-33,177;CL:0002032,9.82e-33,161;CL:0000837,9.82e-33,161;CL:0000763,3.86e-28,108;CL:0000049,3.86e-28,108;CL:0000738,3.84e-25,136;CL:0000766,8.19e-22,72;CL:0002031,5.52e-17,120;CL:0002087,8.93e-17,115;CL:0000094,5.77e-15,8;CL:0000557,5.96e-14,67;CL:0000839,8.22e-13,66;CL:0002194,1.28e-10,59;CL:0000576,1.28e-10,59;CL:0000040,1.28e-10,59;CL:0000559,1.28e-10,59;CL:0000081,1.48e-10,11;CL:0000134,2.34e-10,354;CL:0002009,4.05e-10,61;CL:0002320,7.04e-10,361;CL:0002393,2.67e-09,9;CL:0002397,2.67e-09,9;CL:0000473,1.16e-08,48;CL:0000234,1.16e-08,48;CL:0000775,1.25e-08,3;CL:0000219,3.26e-08,386;CL:0000860,9.44e-08,42;CL:0002057,9.44e-08,42;CL:0000898,2.56e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000049;7.11e-09;108 | |||
|ontology_enrichment_disease=DOID:1240!1.21e-11!39;DOID:2531!7.89e-10!51;DOID:0060083!7.89e-10!51;DOID:8692!1.06e-08!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;5.64e-10;31!DOID:1240;2.90e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.30e-10,39;DOID:8692,3.01e-10,31;DOID:2531,2.70e-08,51;DOID:0060083,2.70e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!5.00e-25!102;UBERON:0003061!5.00e-25!102;UBERON:0002193!2.40e-22!112;UBERON:0002371!3.97e-22!80;UBERON:0001474!4.62e-20!86;UBERON:0002405!4.29e-16!115;UBERON:0004765!3.26e-14!101;UBERON:0001434!3.26e-14!101;UBERON:0002384!5.23e-14!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.63e-16,98;UBERON:0003061,1.63e-16,98;UBERON:0002193,3.24e-14,108;UBERON:0002371,6.36e-13,76;UBERON:0002405,1.03e-12,93;UBERON:0001474,1.60e-11,82;UBERON:0004765,5.89e-10,90;UBERON:0002384,3.13e-09,371;UBERON:0001434,2.28e-08,100;UBERON:0003351,9.21e-07,6 | |||
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| |||
|short_description=p11@ARHGEF6 | |||
}} |
Revision as of 10:53, 14 September 2013
Short description: | p11@ARHGEF6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_ARHGEF6_5end |
Coexpression cluster: | C1020_Mast_CD4_acute_chronic_CD8_thymus_Peripheral |
Association with transcript: | 356bp_to_ENST00000535736, NM_004840, uc004fab.2_5end |
EntrezGene: | ARHGEF6 |
HGNC: | 685 |
UniProt: | F5H8B2Q15052Q8N4Q3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.89e-35 | 168 |
hematopoietic cell | 7.08e-33 | 177 |
hematopoietic oligopotent progenitor cell | 9.82e-33 | 161 |
hematopoietic multipotent progenitor cell | 9.82e-33 | 161 |
myeloid cell | 3.86e-28 | 108 |
common myeloid progenitor | 3.86e-28 | 108 |
leukocyte | 3.84e-25 | 136 |
myeloid leukocyte | 8.19e-22 | 72 |
hematopoietic lineage restricted progenitor cell | 5.52e-17 | 120 |
nongranular leukocyte | 8.93e-17 | 115 |
granulocyte | 5.77e-15 | 8 |
granulocyte monocyte progenitor cell | 5.96e-14 | 67 |
myeloid lineage restricted progenitor cell | 8.22e-13 | 66 |
monopoietic cell | 1.28e-10 | 59 |
monocyte | 1.28e-10 | 59 |
monoblast | 1.28e-10 | 59 |
promonocyte | 1.28e-10 | 59 |
blood cell | 1.48e-10 | 11 |
mesenchymal cell | 2.34e-10 | 354 |
macrophage dendritic cell progenitor | 4.05e-10 | 61 |
connective tissue cell | 7.04e-10 | 361 |
intermediate monocyte | 2.67e-09 | 9 |
CD14-positive, CD16-positive monocyte | 2.67e-09 | 9 |
defensive cell | 1.16e-08 | 48 |
phagocyte | 1.16e-08 | 48 |
neutrophil | 1.25e-08 | 3 |
motile cell | 3.26e-08 | 386 |
classical monocyte | 9.44e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.44e-08 | 42 |
naive T cell | 2.56e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.63e-16 | 98 |
blood island | 1.63e-16 | 98 |
hemolymphoid system | 3.24e-14 | 108 |
bone marrow | 6.36e-13 | 76 |
immune system | 1.03e-12 | 93 |
bone element | 1.60e-11 | 82 |
skeletal element | 5.89e-10 | 90 |
connective tissue | 3.13e-09 | 371 |
skeletal system | 2.28e-08 | 100 |
pharyngeal epithelium | 9.21e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.30e-10 | 39 |
myeloid leukemia | 3.01e-10 | 31 |
hematologic cancer | 2.70e-08 | 51 |
immune system cancer | 2.70e-08 | 51 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.