FFCP PHASE1:Hg19::chr16:71660111..71660123,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=91862 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30525 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=21bp_to_ENST00000299952_5end | |||
|description=CAGE_peak_3_at_MARVELD3_5end | |||
|id=chr16:71660111..71660123,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.05e-26!254;CL:0000223!5.05e-22!59;CL:0002076!4.05e-20!43;CL:0002368!7.65e-12!13;CL:0002202!5.50e-08!9;CL:0002632!5.50e-08!9;CL:0002251!6.17e-08!21;CL:0000082!1.47e-07!19;CL:0002159!3.35e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.40e-10;13!CL:0002202;2.99e-08;9!CL:0002632;2.99e-08;9!CL:0000317;8.07e-08;2!CL:1000448;8.07e-08;2!CL:0002308;8.07e-08;2!CL:0002140;8.07e-08;2!CL:0002076;2.06e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.68e-11,253;CL:0000223,2.01e-10,58;CL:0002076,2.03e-10,42;CL:0002368,2.26e-10,13;CL:0002202,5.39e-08,9;CL:0002632,5.39e-08,9;CL:0000317,7.87e-08,2;CL:1000448,7.87e-08,2;CL:0002308,7.87e-08,2;CL:0002140,7.87e-08,2 | |||
|ontology_enrichment_development_v019=CL:0000223;5.82e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.73e-23!106;DOID:0050687!1.41e-15!143;DOID:1749!5.31e-15!14;DOID:299!1.95e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.66e-19;14!DOID:5093;3.27e-08;4!DOID:1612;3.27e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.41e-19,14;DOID:5093,3.30e-08,4;DOID:1612,3.30e-08,4;DOID:305,3.56e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.34e-33!169;UBERON:0000925!9.34e-33!169;UBERON:0006595!9.34e-33!169;UBERON:0001007!4.14e-27!155;UBERON:0001555!4.14e-27!155;UBERON:0007026!4.14e-27!155;UBERON:0004921!6.17e-24!129;UBERON:0004185!6.17e-24!129;UBERON:0000077!8.03e-20!130;UBERON:0005911!1.76e-18!82;UBERON:0001004!5.51e-16!72;UBERON:0001041!5.73e-14!98;UBERON:0000466!3.98e-13!126;UBERON:0000065!6.01e-13!53;UBERON:0005178!4.12e-12!34;UBERON:0002224!4.12e-12!34;UBERON:0005181!1.47e-11!35;UBERON:0005177!2.83e-11!107;UBERON:0005153!2.93e-11!37;UBERON:0000464!1.98e-10!104;UBERON:0009569!6.61e-10!113;UBERON:0002048!1.57e-09!22;UBERON:0000117!1.57e-09!22;UBERON:0000171!1.57e-09!22;UBERON:0000170!1.57e-09!22;UBERON:0005597!1.57e-09!22;UBERON:0000118!1.57e-09!22;UBERON:0000915!2.79e-09!52;UBERON:0003929!5.13e-09!54;UBERON:0008947!5.49e-09!38;UBERON:0003258!5.49e-09!38;UBERON:0005157!1.13e-08!51;UBERON:0000161!1.33e-08!35;UBERON:0000072!1.58e-08!46;UBERON:0004807!1.97e-08!28;UBERON:0001048!3.37e-08!168;UBERON:0000062!4.67e-08!511;UBERON:0000481!5.01e-08!347;UBERON:0000344!5.65e-08!12;UBERON:0004802!1.47e-07!19;UBERON:0000115!1.47e-07!19;UBERON:0000160!1.78e-07!27;UBERON:0005409!2.14e-07!35;UBERON:0007196!2.36e-07!14;UBERON:0001558!2.36e-07!14;UBERON:0003104!2.75e-07!238;UBERON:0009142!2.75e-07!238;UBERON:0002530!8.43e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;8.85e-10;17!UBERON:0004921;2.32e-09;33!UBERON:0005409;3.18e-09;22!UBERON:0007196;4.99e-09;15!UBERON:0001558;4.99e-09;15!UBERON:0002419;8.07e-08;2!UBERON:0007771;8.07e-08;2!UBERON:0003297;8.07e-08;2!UBERON:0001821;8.07e-08;2!UBERON:0003487;8.07e-08;2!UBERON:0001820;8.07e-08;2!UBERON:0003126;3.34e-07;7!UBERON:0001005;3.34e-07;7!UBERON:0003127;3.91e-07;2!UBERON:0003343;4.51e-07;4!UBERON:0004785;4.51e-07;4!UBERON:0000059;9.74e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.27e-16,160;UBERON:0000925,3.27e-16,160;UBERON:0006595,3.27e-16,160;UBERON:0001007,7.01e-13,145;UBERON:0001555,7.01e-13,145;UBERON:0007026,7.01e-13,145;UBERON:0004921,1.12e-11,118;UBERON:0000160,3.19e-10,17;UBERON:0007196,8.76e-09,15;UBERON:0001558,8.76e-09,15;UBERON:0005409,2.75e-08,25;UBERON:0002419,7.87e-08,2;UBERON:0007771,7.87e-08,2;UBERON:0003297,7.87e-08,2;UBERON:0001821,7.87e-08,2;UBERON:0003487,7.87e-08,2;UBERON:0001820,7.87e-08,2;UBERON:0005089,7.87e-08,2;UBERON:0005088,7.87e-08,2;UBERON:0001004,1.40e-07,74;UBERON:0000915,3.71e-07,52;UBERON:0003126,3.84e-07,7;UBERON:0001005,3.84e-07,7;UBERON:0000059,4.41e-07,11;UBERON:0003127,4.73e-07,2;UBERON:0005178,5.45e-07,34;UBERON:0002224,5.45e-07,34;UBERON:0003343,7.92e-07,4;UBERON:0004785,7.92e-07,4;UBERON:0005181,9.79e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,1.204823675113,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.654895377488563,0.728590576585084,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,0.860413786167011,0.731842236777572,0.397589304964456,0.464775771478074,0.414644220061482,1.00928340350251,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,5.07020139287323,0,1.18157981336281,0,1.8448265781467,0,0.768251997860379,0,0.201057944823262,0.833296006426766,0,0,0,0,0,0,0,0,2.37061319387782,0.858486162094873,0,0,0,0,1.34385702559088,0.567100388969546,0.268675568108545,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.27407504055985,1.03473071292505,0,0,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846016147141356,1.40354529212299,0.736647911487171,0,0,0,0.902399225814824,0.15403067420883,0,0,0,0,0,0,0,0,0,1.01950509218015,0,0.223874754722178,0,0,0.256450125116389,0,0,0.721287081534056,0,0,3.44559322797703,3.90036147621913,0,0,0,0,0,0,0,0,0.0890320356467374,1.32227932288782,0.960950336825531,0.638063562472921,2.73126008309985,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.865999014529609,1.34060455107157,2.17781969722645,0.376575203107117,0.43050537267123,1.68471475667626,1.7737206141467,0,0,0,0,0,0,0,0,0,0.106824071127473,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43282702530686,0,0,0,0,0.23874448473769,1.18785872333055,0,0,0,0,0,0.211125408127993,0.19924798825107,1.93398740871803,0.755798243562828,0,0,0,0.269605053441981,0.895105873378046,0,0.0986434056369336,0,0,0,0,0,4.94812746061943,4.19807999981739,0,1.82069517256799,1.01701460117107,2.6002644994473,0,0,0,0,0,0,0,0,0.219385397153973,0,2.23077990845765,0.0769502585037971,0,0.46112780877612,0.987334088507493,1.3037684630641,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0.421996129056054,0.489698424477443,0.424059214301822,0,1.99052386215701,2.91909962861019,3.05515072466813,0,0,0,0,0,0,0,0.19566461893209,0,0,1.20990716048664,0,0,0.300646838828985,0.103688191397247,0,0,0,0,0.853828638089378,0,0.694238953340524,1.27390116638691,2.17648016451006,0.698906672968121,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0,0.126621591911757,0.977756913674015,0.0801588202515337,1.28071796843612,0,1.29681375438695,0,0,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,1.16495949527454,0.709048640765013,0.741742725430498,0.337017719270924,0.0984274815147488,0,0,0,0.482259445395058,0.412618309791701,0,0,0.77380195455795,0,1.67717343799633,2.36417121897595,1.94081976099493,0,0,1.91915197319445,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0.171086837884329,2.81926008926669,0.427149650270779,0.471612915298998,0.828478110694391,0,0,0,2.55336503108073,0,0,0,0,0.471162288750703,0,0,0,0,0,0,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05656061679314,0,0,0,0,0,1.67855409263333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0.252071696221718,0,0,0,1.27592034051333,0.353909170043221,1.10057159113007,1.27078232765372,0,0,0,0,0,4.68908406739856,0.523813388962845,0,0.591424344868181,0,0,0,0,0,2.74128883428591,0,0,1.66091155931474,0,0,1.21393120847326,0,0.177404740325278,0,0,0,0,0.236387681767936,0.778619813244484,0.706437835654626,0,0.840816489941367,1.82631744101899,0,0,0.285906176706625,0,0,0,0,0,0,0,1.29068207646083,0,0,0.423387050190929,0.9164274741762,0,0,0.223710863595585,0.687051635306701,0.609589624911347,0,0,0,0,0.701818390386317,0.198950775161368,0,0.22589216407792,0,0.301925687133347,7.56306749457858,2.62271472604749,0,0,1.17838273550813,0,0,0,0,0,0,0,2.14264726326789,0.705789743431384,0.802413666891683,0.730336388246517,0.917458566809082,0,0,0,0.436350690340377,0.5290268405154,0,0,0,0,0,0,0.203977659483963,0.801652215796681,0.459474497674225,0.250707539292375,0.0757786982182394,0,0,0,0.213233981900981,0.23806443146374,0.193766729508018,0.124149428591716,0,1.78212043178862,1.21270313374932,0.435433495793923,0.342233301085281,0.5388164241167,2.07994395638761,1.33064142618405,0.488419611665847,0,0,0,0,0.244482888365733,0.813792356631477,0,0,0 | |||
|short_description=p3@MARVELD3 | |||
}} |
Revision as of 12:11, 20 January 2014
Short description: | p3@MARVELD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_MARVELD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 21bp_to_ENST00000299952_5end |
EntrezGene: | MARVELD3 |
HGNC: | 30525 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.68e-11 | 253 |
endodermal cell | 2.01e-10 | 58 |
endo-epithelial cell | 2.03e-10 | 42 |
respiratory epithelial cell | 2.26e-10 | 13 |
epithelial cell of tracheobronchial tree | 5.39e-08 | 9 |
epithelial cell of lower respiratory tract | 5.39e-08 | 9 |
sebum secreting cell | 7.87e-08 | 2 |
epithelial cell of sweat gland | 7.87e-08 | 2 |
epithelial cell of skin gland | 7.87e-08 | 2 |
acinar cell of sebaceous gland | 7.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.27e-16 | 160 |
endoderm | 3.27e-16 | 160 |
presumptive endoderm | 3.27e-16 | 160 |
digestive system | 7.01e-13 | 145 |
digestive tract | 7.01e-13 | 145 |
primitive gut | 7.01e-13 | 145 |
subdivision of digestive tract | 1.12e-11 | 118 |
intestine | 3.19e-10 | 17 |
tracheobronchial tree | 8.76e-09 | 15 |
lower respiratory tract | 8.76e-09 | 15 |
gastrointestinal system | 2.75e-08 | 25 |
skin gland | 7.87e-08 | 2 |
epidermis gland | 7.87e-08 | 2 |
gland of integumental system | 7.87e-08 | 2 |
sebaceous gland | 7.87e-08 | 2 |
skin sebaceous gland | 7.87e-08 | 2 |
sweat gland | 7.87e-08 | 2 |
sweat gland placode | 7.87e-08 | 2 |
sebaceous gland placode | 7.87e-08 | 2 |
respiratory system | 1.40e-07 | 74 |
thoracic segment of trunk | 3.71e-07 | 52 |
trachea | 3.84e-07 | 7 |
respiratory airway | 3.84e-07 | 7 |
large intestine | 4.41e-07 | 11 |
open tracheal system trachea | 4.73e-07 | 2 |
thoracic cavity element | 5.45e-07 | 34 |
thoracic cavity | 5.45e-07 | 34 |
mucosa of oral region | 7.92e-07 | 4 |
respiratory system mucosa | 7.92e-07 | 4 |
thoracic segment organ | 9.79e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.41e-19 | 14 |
thoracic cancer | 3.30e-08 | 4 |
breast cancer | 3.30e-08 | 4 |
carcinoma | 3.56e-08 | 106 |