FFCP PHASE1:Hg19::chr1:201252522..201252533,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5317 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9023 | |||
|TSSclassifier=strong | |||
|UniProt=Q13835 | |||
|association_with_transcript=-46bp_to_ENST00000263946,ENST00000367324,NM_000299,NM_001005337,uc001gwd.2,uc001gwe.2,uc009wzm.2_5end | |||
|coexpression_cluster_id=C2548 | |||
|description=CAGE_peak_2_at_PKP1_5end | |||
|id=chr1:201252522..201252533,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.59e-13!43;CL:0002159!3.13e-11!13;CL:0002368!2.30e-10!13;CL:0000223!3.90e-09!59;CL:0000066!7.98e-09!254;CL:0000622!1.54e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.41e-16;42!CL:0002368;1.54e-15;13!CL:0002159;2.10e-15;14!CL:0000622;3.12e-12;5!CL:0000154;4.19e-10;6!CL:0002251;5.74e-10;20!CL:0000244;9.34e-10;4!CL:0000731;9.34e-10;4!CL:0002202;1.16e-08;9!CL:0002632;1.16e-08;9!CL:0002623;5.20e-08;3!CL:0002166;8.32e-08;3!CL:0002328;8.90e-08;3!CL:0002621;9.64e-08;3!CL:0000307;2.59e-07;3!CL:0000349;3.57e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.34e-21,42;CL:0002159,1.98e-15,14;CL:0002368,2.00e-15,13;CL:0000223,1.18e-14,58;CL:0000066,1.15e-13,253;CL:0000622,3.19e-12,5;CL:0000154,4.27e-10,6;CL:0002251,5.71e-10,20;CL:0000244,8.45e-10,4;CL:0000731,8.45e-10,4;CL:0002202,1.31e-08,9;CL:0002632,1.31e-08,9;CL:0002623,5.32e-08,3;CL:0002166,7.86e-08,3;CL:0002328,9.64e-08,3;CL:0002621,9.64e-08,3;CL:0002077,1.76e-07,34;CL:0000068,2.93e-07,3;CL:0000069,2.93e-07,3;CL:0000307,2.93e-07,3;CL:0000377,2.93e-07,3;CL:0000349,3.39e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000223;1.67e-08;58!CL:0000377;2.59e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!2.97e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;9.73e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.14e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0000924!1.00e-12!173;UBERON:0006601!1.00e-12!173;UBERON:0000166!4.95e-12!21;UBERON:0004121!5.99e-12!169;UBERON:0000161!1.34e-11!35;UBERON:0001004!9.37e-11!72;UBERON:0001444!4.11e-10!48;UBERON:0000153!2.78e-09!129;UBERON:0007811!2.78e-09!129;UBERON:0000165!4.45e-09!28;UBERON:0000930!4.45e-09!28;UBERON:0004119!2.25e-08!169;UBERON:0000925!2.25e-08!169;UBERON:0006595!2.25e-08!169;UBERON:0000033!6.95e-08!123;UBERON:0000064!6.99e-08!219;UBERON:0003102!7.83e-08!95;UBERON:0007023!1.40e-07!115;UBERON:0001044!1.94e-07!6;UBERON:0003293!1.94e-07!6;UBERON:0003294!1.94e-07!6;UBERON:0010047!1.94e-07!6;UBERON:0000167!1.94e-07!6;UBERON:0003408!4.88e-07!10;UBERON:0000365!5.75e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;6.55e-11;28!UBERON:0000161;3.91e-10;19!UBERON:0000166;3.91e-10;19!UBERON:0000486;1.06e-08;12!UBERON:0000365;8.81e-08;5!UBERON:0004815;8.90e-08;3!UBERON:0002031;8.90e-08;3!UBERON:0001949;9.64e-08;3!UBERON:0000305;2.55e-07;7!UBERON:0000153;5.28e-07;54!UBERON:0005631;6.46e-07;10!UBERON:0000158;6.46e-07;10!UBERON:0007811;6.56e-07;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000153,3.04e-14,62;UBERON:0007811,3.04e-14,62;UBERON:0001004,4.67e-13,74;UBERON:0000166,1.87e-12,22;UBERON:0000033,4.86e-11,56;UBERON:0003102,1.05e-10,99;UBERON:0000161,1.22e-10,36;UBERON:0000165,2.05e-10,29;UBERON:0000930,2.05e-10,29;UBERON:0004119,2.32e-10,160;UBERON:0000925,2.32e-10,160;UBERON:0006595,2.32e-10,160;UBERON:0001444,4.23e-09,49;UBERON:0005631,2.88e-08,14;UBERON:0000158,2.88e-08,14;UBERON:0000365,8.14e-08,5;UBERON:0004815,9.64e-08,3;UBERON:0002031,9.64e-08,3;UBERON:0001949,9.64e-08,3;UBERON:0000065,2.33e-07,54;UBERON:0000305,2.34e-07,7;UBERON:0003408,2.52e-07,10;UBERON:0004121,4.35e-07,171;UBERON:0000924,4.35e-07,171;UBERON:0006601,4.35e-07,171;UBERON:0000974,4.91e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,1.74753097704138,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,9.19421224478927,9.0361775633475,6.65557218300218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.7717156823066,3.40644409211845,0,0,0.087834785693126,0,11.2931539370688,22.6178510098502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.9851728678394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0.23486899728753,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,9.08326009867495,10.9098448236334,5.73609190778008,0,0,0.116193942869518,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.5600456653801,12.3641928583382,3.9206299240536,7.59225250299943,0,0,0,0.579652024875384,0,0.144366447761074,0,0,0,0,0,0,0,13.1227367581488,6.88726725615324,7.08875486211932,5.82130397568514,2.61570544662566,4.98397482914775,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,2.29723871668228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.737476674166813,0.0868836144680828,0,0,0,0,0,5.45629628603267,0,2.41912234663744,0.248107807818777,0,0,0,0,0,0,0,0,0,0,0,0,9.2232976339511,9.20809889358963,0,0,0,0,0.385076685522074,0,0,0.527758144464379,0,0,0,0,0,0,0.764628819135115,0,0.223874754722178,0,0,1.28225062558195,0.328014645699706,0.650756789328606,0.103041011647722,0,0,7.46545199395024,15.6014459048765,0,0.290012154876366,0,0,0,0,0,0,0.623224249527161,6.44611169907815,6.1500821556834,3.44554323735377,6.2717824130441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202910376962704,0.6196469961995,0,0,0,0,0,0,0,0,0.349934720244983,6.44688155260931,6.03272047982209,4.3556393944529,0.282431402330337,9.90162357143829,6.73885902670502,15.9634855273203,5.28363820476007,0,0,0,0,0,0,0,0,0,0,4.16568367167754,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90460633053462,0,0,0,15.0409025384745,2.37571744666111,6.75753544618311,0,0,0,0,0,0,0,0,0,0,0,0.0898683511473268,0,0,0.591860433821602,0,0,0,0.0927680981618513,0,0,0,0,1.0241410345695,0,0,0,0,0,0,0.241192877250816,0,0,0.295547618953547,0.219385397153973,0,20.7741378975119,4.00141344219745,0,0,0,0,2.55200927785536,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,0,0,0,1.9566461893209,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0.277349346026277,0,5.09560466554764,0,0.17472666824203,0,0,0,0,9.60191263235352,0,7.23138370497704,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0.621262677827163,4.71388069233591,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0,0,0,0.403100834920358,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,1.799791132412,17.7974449548328,0.242998226632099,10.7339100031765,0,0,0,0,1.53532157855556,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0.13223260174269,0,0,0.213574825135389,0.157204305099666,0,0,0,0,10.2134601243229,0.544017803369474,2.0055191521816,0.612691153526923,0.327872630709804,0,0,0.244052529803926,0.1251909307065,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,2.52369796457302,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,12.58915569475,9.33115890049459,0.127894371303652,0,17.4565195460045,0,0,0,16.6073924107063,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0.159633859057151,0.205116364240755,0.252071696221718,0.691572524642179,0.161475645631851,0,6.57589713956872,0,8.43771553199723,0.577628330751691,0,0,0,0.0752103283492573,0,0,0,0,1.33070477595341,0.135075169236789,0,0,0.317079050969534,0,1.09651553371436,3.96968942711435,41.3297424245108,0.127762427639595,4.28561468702629,2.01770233331294,0,0,0.177404740325278,0,0.171488009437418,0,0.0657727735628491,0,3.33694205676207,0.313972371402056,0.314231179832004,0,0.913158720509496,0,0.9555033757741,3.00201485541957,0,0,0,0,4.35153944742377,18.4375955261466,22.811568839865,0.860454717640555,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,1.02662806856247,0,7.77137588894623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.128915775947154,0,1.60698544745092,5.29342307573538,0,0,0.458729283404541,0,0,0.475940431336403,0,0,0,0,0,0,0,0,0,0.26721740526556,0,0.250707539292375,0.0757786982182394,0,0,0,4.69114760182158,1.1903221573187,3.48780113114433,2.42091385753846,0,0,0.202117188958219,16.764189588066,5.81796611844978,5.32081218815241,1.14755528628282,0.665320713092027,0.976839223331694,0,0,0,0,0,4.47585796147312,0,2.81783311027437,0 | |||
|short_description=p2@PKP1 | |||
}} |
Revision as of 23:15, 10 January 2014
Short description: | p2@PKP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PKP1_5end |
Coexpression cluster: | C2548_salivary_immature_tongue_esophagus_amniotic_cervical_Corneal |
Association with transcript: | -46bp_to_ENST00000263946, ENST00000367324, NM_000299, NM_001005337, uc001gwd.2, uc001gwe.2, uc009wzm.2_5end |
EntrezGene: | PKP1 |
HGNC: | 9023 |
UniProt: | Q13835 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.34e-21 | 42 |
general ecto-epithelial cell | 1.98e-15 | 14 |
respiratory epithelial cell | 2.00e-15 | 13 |
endodermal cell | 1.18e-14 | 58 |
epithelial cell | 1.15e-13 | 253 |
acinar cell | 3.19e-12 | 5 |
protein secreting cell | 4.27e-10 | 6 |
epithelial cell of alimentary canal | 5.71e-10 | 20 |
transitional epithelial cell | 8.45e-10 | 4 |
urothelial cell | 8.45e-10 | 4 |
epithelial cell of tracheobronchial tree | 1.31e-08 | 9 |
epithelial cell of lower respiratory tract | 1.31e-08 | 9 |
acinar cell of salivary gland | 5.32e-08 | 3 |
epithelial cell of Malassez | 7.86e-08 | 3 |
bronchial epithelial cell | 9.64e-08 | 3 |
gingival epithelial cell | 9.64e-08 | 3 |
ecto-epithelial cell | 1.76e-07 | 34 |
duct epithelial cell | 2.93e-07 | 3 |
branched duct epithelial cell | 2.93e-07 | 3 |
tracheal epithelial cell | 2.93e-07 | 3 |
tracheoblast | 2.93e-07 | 3 |
extraembryonic cell | 3.39e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
anterior region of body | 3.04e-14 | 62 |
craniocervical region | 3.04e-14 | 62 |
respiratory system | 4.67e-13 | 74 |
oral opening | 1.87e-12 | 22 |
head | 4.86e-11 | 56 |
surface structure | 1.05e-10 | 99 |
orifice | 1.22e-10 | 36 |
mouth | 2.05e-10 | 29 |
stomodeum | 2.05e-10 | 29 |
endoderm-derived structure | 2.32e-10 | 160 |
endoderm | 2.32e-10 | 160 |
presumptive endoderm | 2.32e-10 | 160 |
subdivision of head | 4.23e-09 | 49 |
extraembryonic membrane | 2.88e-08 | 14 |
membranous layer | 2.88e-08 | 14 |
urothelium | 8.14e-08 | 5 |
lower respiratory tract epithelium | 9.64e-08 | 3 |
epithelium of bronchus | 9.64e-08 | 3 |
gingival epithelium | 9.64e-08 | 3 |
respiratory tract | 2.33e-07 | 54 |
amnion | 2.34e-07 | 7 |
gland of gut | 2.52e-07 | 10 |
ectoderm-derived structure | 4.35e-07 | 171 |
ectoderm | 4.35e-07 | 171 |
presumptive ectoderm | 4.35e-07 | 171 |
neck | 4.91e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.14e-10 | 14 |