FFCP PHASE1:Hg19::chr22:30645188..30645226,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr22:30645188..30645226,- | |||
|id=chr22:30645188..30645226,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000569;3.62e-11;4!CL:1000497;4.36e-11;17!CL:0002518;4.36e-11;17!CL:0002494;3.39e-09;16!CL:1000507;4.29e-09;10!CL:1000494;4.29e-09;10!CL:0002582;7.97e-09;3!CL:0000064;2.28e-08;3!CL:0000067;2.28e-08;3!CL:0005012;2.28e-08;3!CL:0002304;2.28e-08;3!CL:0000708;2.28e-08;3!CL:0000077;6.19e-08;19!CL:1000449;1.06e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000569,2.83e-11,4;CL:0000011,2.83e-11,4;CL:1000497,3.26e-11,17;CL:0002518,3.26e-11,17;CL:1000507,3.50e-09,10;CL:1000494,3.50e-09,10;CL:0002494,3.80e-09,16;CL:0002582,7.71e-09,3;CL:0000064,1.28e-08,3;CL:0000067,1.28e-08,3;CL:0005012,1.28e-08,3;CL:0002304,1.28e-08,3;CL:0000708,2.39e-08,3;CL:0000077,6.81e-08,19;CL:1000449,8.78e-08,15 | |||
|ontology_enrichment_development_v019=CL:0000011;3.62e-11;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;9.57e-07;2 | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003103!1.59e-14!69;UBERON:0000481!6.08e-10!347;UBERON:0007100!2.91e-09!27;UBERON:0003886!6.33e-08!63;UBERON:0000948!7.16e-08!24;UBERON:0005498!7.16e-08!24;UBERON:0004140!7.16e-08!24;UBERON:0009881!7.16e-08!24;UBERON:0004141!7.16e-08!24;UBERON:0003084!7.16e-08!24;UBERON:0007005!7.16e-08!24;UBERON:0004139!7.16e-08!24;UBERON:0004291!7.16e-08!24;UBERON:0000119!8.34e-08!312;UBERON:0001048!1.11e-07!168;UBERON:0003104!1.39e-07!238;UBERON:0009142!1.39e-07!238;UBERON:0005256!3.49e-07!143;UBERON:0003914!4.23e-07!118;UBERON:0002100!5.20e-07!216;UBERON:0000483!6.92e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0002113;2.59e-11;24!UBERON:0011143;2.59e-11;24!UBERON:0004211;4.29e-09;10!UBERON:0009773;4.29e-09;10!UBERON:0001231;4.29e-09;10!UBERON:0004810;4.29e-09;10!UBERON:0000489;6.07e-09;29!UBERON:0006554;1.45e-08;30!UBERON:0001008;1.45e-08;30!UBERON:0003210;2.28e-08;3!UBERON:0001778;2.28e-08;3!UBERON:0001775;2.28e-08;3!UBERON:0000948;3.65e-08;22!UBERON:0006555;1.06e-07;15!UBERON:0004819;1.06e-07;15!UBERON:0001285;1.06e-07;15!UBERON:0007684;1.06e-07;15!UBERON:0003103;3.09e-07;61!UBERON:0002203;5.47e-07;6!UBERON:0001768;5.47e-07;6!UBERON:0002200;5.47e-07;6!UBERON:0007100;5.57e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003103,5.24e-13,68;UBERON:0002113,2.43e-10,26;UBERON:0003918,2.43e-10,26;UBERON:0011143,2.43e-10,26;UBERON:0005095,2.43e-10,26;UBERON:0007687,2.43e-10,26;UBERON:0004810,3.50e-09,10;UBERON:0000948,6.06e-09,24;UBERON:0005498,6.06e-09,24;UBERON:0004140,6.06e-09,24;UBERON:0009881,6.06e-09,24;UBERON:0004141,6.06e-09,24;UBERON:0003084,6.06e-09,24;UBERON:0007005,6.06e-09,24;UBERON:0004139,6.06e-09,24;UBERON:0004291,6.06e-09,24;UBERON:0001778,1.28e-08,3;UBERON:0001775,1.28e-08,3;UBERON:0003210,2.39e-08,3;UBERON:0000489,2.77e-08,31;UBERON:0004211,8.78e-08,15;UBERON:0009773,8.78e-08,15;UBERON:0001231,8.78e-08,15;UBERON:0001285,8.78e-08,15;UBERON:0007684,8.78e-08,15;UBERON:0004208,8.78e-08,15;UBERON:0007100,9.97e-08,27;UBERON:0005172,1.59e-07,54;UBERON:0005173,1.59e-07,54;UBERON:0006555,3.14e-07,16;UBERON:0004819,3.14e-07,16;UBERON:0002203,4.85e-07,6;UBERON:0001768,4.85e-07,6;UBERON:0002200,4.85e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0.631719873426831,0,0.737201809504527,1.39560233594486,0,0,0,0,0,0,0,0,0.369363174230364,0,0.626909442956176,0,0.136874425072884,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68280343881454,0.255725123687061,0,0.50133791063589,0,0,0,1.32348744029695,3.99112915432615,1.93236528524877,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0.286836620748814,0.354668382198357,0,1.06748995729705,0.49333509683432,1.55605517699883,0,0,0.454072282934794,0,0.234321431833797,0,0,0.448346041655403,0,0,0,0,0.368502951935304,0,0,0,0,0,0,0.125118519871964,0,0,0,0.45071417671979,0.226864366320042,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,1.2347220339942,1.47008711385542,0,0,0,0,0,0.857839051492628,0,0,0,0,0,0,0,0.34779121492523,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985326475791887,0.176096868026452,0.829312462163088,0.864719720501769,0.25248486685276,0,0,0,0,0,0,0,1.56983518083505,3.05172048183296,1.1734125731352,0.517086863031111,0,3.381211010224,0,0,0.514414748524284,0,0.532844358032199,0,0,0,0.65147236858747,0.355391948742546,0,0.602878754119172,0,0.99972991182057,0,0,0,0,0,0,0.144781306667579,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.468565659970853,0,0,0,0,0.368738337083406,0.0868836144680828,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0.256278298511402,0,0,0,0.771048469013278,2.48586415438378,1.31403449622095,4.67328986265259,3.25389059687886,0.120859449591622,0,0,1.03333003348146,0,1.04899531967539,0,1.69433741629712,10.1965469992991,0,2.63879072232189,0,0,0.215915916102139,0,1.08378575017541,5.51858751240339,0,0,1.56712328305525,0,0,2.56450125116389,2.29610251989794,0.976135183992909,0,0,0,0,0,0,4.25351160485337,0.308097234229289,0.921022048356777,1.7918754422989,0,0.145016693914229,1.36362603865761,0.445160178233687,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,1.58189712359363,0,0.511795582622668,0,0.95460974377781,0.78494864019923,0.359744915166629,0,0.471249609382746,1.01091240786658,0,0.421258456238981,0.48763373908959,0,0,0.9554993798559,0.848432591722276,1.13008116620243,1.65409603063837,0,0,0.578775534266688,0,0,0.30982349809975,0.281695602532241,0,0.0982490410131212,0,1.41904425628239,0,0.658589785919804,0,1.04980416073495,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0,8.66231869737023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0.439524537815682,0,0,0.568272293612826,0,0,0,0,0,0.111308705022906,0,29.7686825460471,0.398495976502139,0.276283915531148,0,0.715880777515084,0,0,0.449341755736634,0,0,0.789147245095469,0,0,0,0,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,1.30586246527318,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0.485560759068186,0,0,0,0,0,0,2.65861549082874,0.992975867626496,0.941798755221676,2.38944859545918,0,0.277349346026277,0.520679215005393,0.0979923974143777,0.174118413160805,0.52418000472609,0,0,0,0,0,0.264768380074501,0,0,0,0,0.195551382734803,0,4.4825128895264,0,0,0,0,0,2.36079817574322,0,0.67952103036807,0.104602846312333,0,0,0,0.684526894459965,0,0,0,0.279282401272254,0,25.8434288847653,0.199679000498991,0.429226048136571,0.669514372325618,0.0671834724867263,0,0,0.630265458457789,0.494495150286999,0.337017719270924,0,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.419636705079985,0,0,0,0,0.662091970365432,3.051222451857,0,0,0,0,1.06720276974141,0,0,0.146552233678082,0,0.258565912723101,0.13223260174269,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0.244052529803926,0.1251909307065,0.573409195690071,0.221858103073705,0.124192805882767,0,0,0,0,3.05845565607623,0,0,4.0298796779456,0.934853239388898,3.32883516901568,0,0,0,8.23824246228925,1.20984739010591,6.372925223894,1.92211694986524,0.318593534327405,0.449803112163605,1.70789252563885,7.87941794897625,0.265841714557995,0,1.20206087197775,0,0.813741466409323,0,1.07410557042488,1.85613503951397,0,0,0,0,1.26184898228651,0,1.28664954824955,0,0.226705925512272,0,6.60789102167462,9.67079741840032,1.23520578864389,3.94711289241673,0,5.01576499504378,0.844712203265363,0,4.49059444250558,1.21543982470953,0.138258436151731,0,0,0,0,0,2.3244333569449,0,0,0,0.567515953566836,0.552317850755522,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0,0.462102664601353,0,0,0,0.526472298444801,0,0,0,0,15.9684573114409,0,0,0.206686796501184,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313972371402056,0,1.96190514319652,0,16.6264245238338,1.43325506366115,0.142953088353313,0,0.23248285073625,0,8.01711364730253,0,0,0,0,0,0.0852134047591577,0,60.7133201641733,0.93061915699296,0,0.223710863595585,2.15930513953535,9.87535192356382,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0.980593287015622,0,0.196308467114945,0.297046400327086,0,0,0,0.257831551894309,0,0.71421575442263,0,0,0.730336388246517,0,0.286679166302903,0,0,0,0.5290268405154,0,0,0,0,0,0.253397002022874,0.101988829741982,0,0,0,0.151557396436479,0,0,0.310298987585686,0,0.23806443146374,0,0,0.112131862580613,0,0,0.217716747896961,0.342233301085281,0,1.00411087549747,0,0.569822880276821,0.106727345877715,0,0.449126010532934,0,0,0.406896178315738,0,0.402547587182052,0 | |||
|short_description=p@chr22:30645188..30645226,- | |||
}} |
Revision as of 15:14, 21 January 2014
Short description: | p@chr22:30645188..30645226, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30645188..30645226, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cardiac mesenchymal cell | 2.83e-11 | 4 |
migratory trunk neural crest cell | 2.83e-11 | 4 |
kidney cell | 3.26e-11 | 17 |
kidney epithelial cell | 3.26e-11 | 17 |
kidney tubule cell | 3.50e-09 | 10 |
nephron tubule epithelial cell | 3.50e-09 | 10 |
cardiocyte | 3.80e-09 | 16 |
visceral preadipocyte | 7.71e-09 | 3 |
ciliated cell | 1.28e-08 | 3 |
ciliated epithelial cell | 1.28e-08 | 3 |
multi-ciliated epithelial cell | 1.28e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.28e-08 | 3 |
leptomeningeal cell | 2.39e-08 | 3 |
mesothelial cell | 6.81e-08 | 19 |
epithelial cell of nephron | 8.78e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
compound organ | 5.24e-13 | 68 |
kidney | 2.43e-10 | 26 |
kidney mesenchyme | 2.43e-10 | 26 |
upper urinary tract | 2.43e-10 | 26 |
kidney rudiment | 2.43e-10 | 26 |
kidney field | 2.43e-10 | 26 |
nephron tubule epithelium | 3.50e-09 | 10 |
heart | 6.06e-09 | 24 |
primitive heart tube | 6.06e-09 | 24 |
primary heart field | 6.06e-09 | 24 |
anterior lateral plate mesoderm | 6.06e-09 | 24 |
heart tube | 6.06e-09 | 24 |
heart primordium | 6.06e-09 | 24 |
cardiac mesoderm | 6.06e-09 | 24 |
cardiogenic plate | 6.06e-09 | 24 |
heart rudiment | 6.06e-09 | 24 |
ciliary epithelium | 1.28e-08 | 3 |
ciliary body | 1.28e-08 | 3 |
blood-cerebrospinal fluid barrier | 2.39e-08 | 3 |
cavitated compound organ | 2.77e-08 | 31 |
nephron epithelium | 8.78e-08 | 15 |
renal tubule | 8.78e-08 | 15 |
nephron tubule | 8.78e-08 | 15 |
nephron | 8.78e-08 | 15 |
uriniferous tubule | 8.78e-08 | 15 |
nephrogenic mesenchyme | 8.78e-08 | 15 |
primary circulatory organ | 9.97e-08 | 27 |
abdomen element | 1.59e-07 | 54 |
abdominal segment element | 1.59e-07 | 54 |
excretory tube | 3.14e-07 | 16 |
kidney epithelium | 3.14e-07 | 16 |
vasculature of eye | 4.85e-07 | 6 |
uvea | 4.85e-07 | 6 |
vasculature of head | 4.85e-07 | 6 |