FFCP PHASE1:Hg19::chr2:204571375..204571432,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=940 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1653 | |||
|TSSclassifier=weak | |||
|UniProt=A8MQU8 | |||
|association_with_transcript=0bp_to_ENST00000374478_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CD28_5end | |||
|id=chr2:204571375..204571432,+ | |||
|ontology_enrichment_celltype=CL:0000738!5.37e-29!140;CL:0002087!4.81e-25!119;CL:0000037!8.01e-21!172;CL:0000566!8.01e-21!172;CL:0002031!1.19e-20!124;CL:0000542!4.72e-20!53;CL:0000051!4.72e-20!53;CL:0000838!2.03e-19!52;CL:0000791!1.91e-18!18;CL:0000789!1.91e-18!18;CL:0002420!1.91e-18!18;CL:0002419!1.91e-18!18;CL:0000790!1.91e-18!18;CL:0002032!2.17e-18!165;CL:0000837!2.17e-18!165;CL:0000084!2.25e-18!25;CL:0000827!2.25e-18!25;CL:0000988!3.06e-18!182;CL:0000625!4.34e-13!11;CL:0000624!1.77e-08!6;CL:0000766!8.39e-08!76;CL:0002009!9.80e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.73e-30;18!CL:0000789;3.73e-30;18!CL:0002419;3.73e-30;18!CL:0000084;9.75e-29;25!CL:0000625;8.84e-21;11!CL:0000624;4.19e-13;6!CL:0000542;2.25e-11;53!CL:0000094;1.36e-09;8!CL:0000898;1.78e-07;3!CL:0002087;4.36e-07;104!CL:0000226;8.55e-07;3!CL:0000842;8.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.57e-30,18;CL:0000789,3.57e-30,18;CL:0002420,3.57e-30,18;CL:0002419,3.57e-30,18;CL:0000790,3.57e-30,18;CL:0000084,9.40e-29,25;CL:0000827,9.40e-29,25;CL:0000738,5.50e-24,136;CL:0000838,2.81e-23,52;CL:0000542,1.14e-22,53;CL:0000051,1.14e-22,53;CL:0000625,8.44e-21,11;CL:0002087,1.06e-20,115;CL:0000037,1.42e-17,168;CL:0000988,6.13e-16,177;CL:0002031,6.97e-16,120;CL:0002032,5.73e-15,161;CL:0000837,5.73e-15,161;CL:0000624,4.19e-13,6;CL:0000094,1.47e-09,8;CL:0000898,1.77e-07,3;CL:0000226,8.72e-07,3;CL:0000842,8.72e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.73e-30;18!CL:0000051;2.25e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.91e-21!115;UBERON:0002390!8.02e-13!102;UBERON:0003061!8.02e-13!102;UBERON:0002193!7.75e-12!112;UBERON:0000178!1.56e-09!15;UBERON:0000179!1.56e-09!15;UBERON:0000463!1.56e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.58e-16;15!UBERON:0000179;8.58e-16;15!UBERON:0000463;8.58e-16;15!UBERON:0002390;7.46e-12;32!UBERON:0002193;4.13e-08;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.65e-16,15;UBERON:0000179,8.65e-16,15;UBERON:0000463,8.65e-16,15;UBERON:0002390,1.05e-09,98;UBERON:0003061,1.05e-09,98;UBERON:0002193,1.22e-09,108;UBERON:0004177,7.18e-07,7;UBERON:0005057,7.18e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0.157421562627358,3.93364276848904,6.1412703695554,2.32224184974114,0,0,0,8.75379366557408,0.284338464974843,0.293600439334847,5.53995408531877,4.01088894940283,4.55722828503289,2.23915474239924,5.18229865630367,2.83333124397605,0.436194716338694,0.755751887377619,0.242584061187816,0.464858073811369,0.822335776043652,0.619412741790207,0,1.0246428261164,0.47296445977717,0,2.5819387343353,0,0.188242339542605,0.272906150057846,1.12361742222542,0,1.92557416245656,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,1.21079900526674,1.10483290796269,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,7.28661131875997,0,59.0129310341499,36.5500009356723,34.335450332918,29.090450197978,53.7771739945424,57.2871844939027,38.9653456815823,28.9667187901451,86.6141367976021,84.182879941776,102.093056639411,21.0069764350107,21.0696143047003,14.6349735097272,12.1594007825773,26.9516869733599,58.5731924490139,66.3501253662488,41.8142095219907,23.7949619664889,59.3991765082978,72.8490184423175,102.219955575879,31.2194106037615,26.0433381542567,29.4640133778996,23.6402936952103,33.9164519559209,37.4792179657038,21.5467299360055,23.8127119107104,22.9831687276195,10.1627274397733,19.9857677358263,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.851363990735132,0,0,0,0.696518949197069,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.63560834872127,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,38.8487527484892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,2.43247561282381,7.5338563714819,0,0,0,0,0,0,0,0,13.3980916937311,13.3689096412901,12.0642454102963,0,0,0,0.167516265334349,0,2.24702107184155,0,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,34.3234923363993,18.551421270401,15.5822234393029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69458841398202,0,0,0,0,10.6563997938756,6.88173486428138,5.12682468456746,9.76750279376935,11.9295059194996,12.3209929126616,9.72056587028607,7.9312517629427,0,0,0,0.929015875628594,0,67.2290419642513,14.1889382728652,0,0,0,0,0,13.9223154210247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78365540616599,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,4.97311047956066,0,0,0,0,0,0,0,1.57829449019094,11.974154617347,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769502585037971,0,0,0,0,0,0,0,21.4605926211047,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.530745387020035,2.4441205797345,0,0,0,0.404406797884062,3.21031058919516,0,0.182454789215666,0,0,0,3.62972148145992,0.30607276163049,0.884612114798832,0,0,0,0,0,0,0,0,0,0,0,1.39781334593624,0,0,0,0,1.16386819786103,0,0.451961481561065,0,0,0.126621591911757,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,1.14580212005842,0,0,0,0.446342914883745,0.604651252380536,0,0,0,0,0,0,34.5467194828401,0,0.272406812223151,0,0,0,0.449947783103001,0.77380195455795,0.242998226632099,0,0.315222829196793,0.524545881349981,0,0,0,2.85878130549347,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,2.13574825135389,1.72924735609633,0.828478110694391,6.45015828355536,27.2704052019163,0,0,0,0.2506898940227,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.398594520940089,0,0,0,0,0.39997479170986,0,211.996639962464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.752103283492572,0,0,0,0,0,0.135075169236789,0,0,0.317079050969534,0.546974809018219,0.548257766857182,1.98484471355718,0,0,0,0,0,0.227662191351298,5.14473746943305,22.8163295360443,0,0.203909198930495,0,0,0,0.549451649953598,0,0,3.65263488203798,0,0,0.929195074296532,0,0,0,0,0,0.17071847709395,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0.647428837187895,0.205325613712494,5.799072156691,0.971421986118279,0,0,0,0,0,0,0.926089897295336,1.74847648403166,0,0.490296643507811,0,0.392616934229891,0,0.8453114551668,0,4.69919589899268,3.86747327841463,0.0999411559249289,0,0,0,0.730336388246517,0.917458566809082,0.286679166302903,0,0.271965960763659,0.436350690340377,4.7612415646386,0,0,0,0,0,0,0,0,0,0,0.530450887527676,0.267964130156178,0,0,1.91910583710883,2.14257988317366,22.0894071639141,31.037357147929,0,0,0.606351566874658,0.217716747896961,0.342233301085281,11.9886654365966,1.00411087549747,0.332660356546013,0,0,0,0,2.34640942403454,0.122241444182866,0.813792356631477,0.665756774185513,4.02547587182052,5.77023286145819 | |||
|short_description=p2@CD28 | |||
}} |
Revision as of 08:01, 21 January 2014
Short description: | p2@CD28 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD28_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000374478_5end |
EntrezGene: | CD28 |
HGNC: | 1653 |
UniProt: | A8MQU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.57e-30 | 18 |
alpha-beta T cell | 3.57e-30 | 18 |
immature T cell | 3.57e-30 | 18 |
mature T cell | 3.57e-30 | 18 |
immature alpha-beta T cell | 3.57e-30 | 18 |
T cell | 9.40e-29 | 25 |
pro-T cell | 9.40e-29 | 25 |
leukocyte | 5.50e-24 | 136 |
lymphoid lineage restricted progenitor cell | 2.81e-23 | 52 |
lymphocyte | 1.14e-22 | 53 |
common lymphoid progenitor | 1.14e-22 | 53 |
CD8-positive, alpha-beta T cell | 8.44e-21 | 11 |
nongranular leukocyte | 1.06e-20 | 115 |
hematopoietic stem cell | 1.42e-17 | 168 |
hematopoietic cell | 6.13e-16 | 177 |
hematopoietic lineage restricted progenitor cell | 6.97e-16 | 120 |
hematopoietic oligopotent progenitor cell | 5.73e-15 | 161 |
hematopoietic multipotent progenitor cell | 5.73e-15 | 161 |
CD4-positive, alpha-beta T cell | 4.19e-13 | 6 |
granulocyte | 1.47e-09 | 8 |
naive T cell | 1.77e-07 | 3 |
single nucleate cell | 8.72e-07 | 3 |
mononuclear cell | 8.72e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 8.65e-16 | 15 |
haemolymphatic fluid | 8.65e-16 | 15 |
organism substance | 8.65e-16 | 15 |
hematopoietic system | 1.05e-09 | 98 |
blood island | 1.05e-09 | 98 |
hemolymphoid system | 1.22e-09 | 108 |
hemopoietic organ | 7.18e-07 | 7 |
immune organ | 7.18e-07 | 7 |