FFCP PHASE1:Hg19::chr2:45236540..45236577,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10736 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10888 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NPC8,Q8TBA2 | |||
|association_with_transcript=0bp_to_ENST00000303077,NM_016932,uc002ruo.2,uc002rup.2_5end | |||
|coexpression_cluster_id=C1906 | |||
|description=CAGE_peak_1_at_SIX2_5end | |||
|id=chr2:45236540..45236577,- | |||
|ontology_enrichment_celltype=CL:0000327!1.96e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000327;5.55e-09;15!CL:0000499;2.08e-07;28!CL:0000153;4.47e-07;9!CL:0000447;4.47e-07;9!CL:0002556;9.71e-07;6!CL:0000188;9.72e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000327,5.16e-09,15;CL:0000499,1.95e-07,28;CL:0000153,4.11e-07,9;CL:0000447,4.11e-07,9;CL:0002556,9.33e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!8.81e-11!72;UBERON:0000078!3.77e-10!18;UBERON:0000165!7.57e-08!28;UBERON:0000930!7.57e-08!28;UBERON:0004119!1.11e-07!169;UBERON:0000925!1.11e-07!169;UBERON:0006595!1.11e-07!169;UBERON:0003104!3.32e-07!238;UBERON:0009142!3.32e-07!238;UBERON:0000065!5.10e-07!53;UBERON:0000481!8.73e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;2.70e-10;16!UBERON:0002036;2.70e-10;16!UBERON:0001434;2.08e-09;36!UBERON:0000165;1.96e-08;28!UBERON:0004905;7.43e-08;8!UBERON:0000982;7.43e-08;8!UBERON:0004770;7.43e-08;8!UBERON:0000075;9.81e-08;16!UBERON:0002204;2.64e-07;70!UBERON:0001044;4.86e-07;6!UBERON:0003293;4.86e-07;6!UBERON:0003294;4.86e-07;6!UBERON:0010047;4.86e-07;6!UBERON:0003408;4.86e-07;6!UBERON:0000167;4.86e-07;6!UBERON:0000072;5.52e-07;37!UBERON:0001758;9.71e-07;6!UBERON:0003672;9.71e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,2.00e-13,74;UBERON:0000165,2.82e-09,29;UBERON:0000930,2.82e-09,29;UBERON:0004119,4.01e-09,160;UBERON:0000925,4.01e-09,160;UBERON:0006595,4.01e-09,160;UBERON:0000065,2.74e-08,54;UBERON:0000072,3.93e-08,47;UBERON:0004905,7.51e-08,8;UBERON:0000982,7.51e-08,8;UBERON:0004770,7.51e-08,8;UBERON:0000075,9.54e-08,16;UBERON:0001007,2.60e-07,145;UBERON:0001555,2.60e-07,145;UBERON:0007026,2.60e-07,145;UBERON:0001044,4.81e-07,6;UBERON:0003293,4.81e-07,6;UBERON:0003294,4.81e-07,6;UBERON:0010047,4.81e-07,6;UBERON:0000167,4.81e-07,6;UBERON:0008947,5.70e-07,38;UBERON:0003258,5.70e-07,38;UBERON:0001758,9.33e-07,6;UBERON:0003672,9.33e-07,6 | |||
|phase1_expression=0.181678379270557,0.642301571672949,0.563817616383885,0,2.68176656656373,0,2.53299878168311,3.15859936713415,13.8428382945914,0,0,0.436882744260345,0.791300934685361,7.30221482464275,14.5814845320283,0,0,0,0,0,2.24400760368678,0,0.286235987131057,0.410623275218653,1.88313959392204,0,0,0,0,0,0,6.43594857135249,9.0361775633475,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,0,0.12786256184353,15.5418835525363,27.5735850849739,27.5208386025565,3.9764297352555,16.5455855902896,0,0,0.175669571386252,0.196468613246569,0.364295288292542,1.11235332835329,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549605231791222,0,0,7.84969293856562,5.4666914686485,0.379891534993739,0,0,0.354668382198357,11.2135520028461,0,0.49333509683432,13.0708634867902,1.75123873690594,0.980771418680752,23.6117587126093,10.37116664064,0,0,0,1.04614076386261,0,0,0,29.6023548319595,29.111733202889,71.3981147924539,0,5.43987244412825,0,0,10.6051751791062,15.2644594243796,18.2862316219561,13.1693286264251,4.59731693698529,22.8361849538027,1.13432183160021,0,1.70845911054854,0.423863802319124,0,0,0.257640540045629,0,0,0,0,0.0920498986422993,0,0,0.10075209822764,0.67824236924195,0,0.272746120590835,0,0,0,0,0.414644220061482,0.252320850875628,0,0,0,0,0.464367928031979,0,4.49565840151407,5.73187946265546,2.89213235860178,4.08087699109858,4.35758888184812,4.98268300133303,3.64044532032444,3.53198637225623,3.8474715694639,0,7.01208869017229,1.2347220339942,1.47008711385542,0,0,0,0,0.368965315629341,0,0,0,0,0,0,1.03993478527958,0,0,0.352226082707465,0,0,0,2.37061319387782,1.71697232418975,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,3.10992173311158,1.15295962733569,0.75745460055828,0,0,0,3.4214489204541,0,0,0,9.9796665067371,10.4630416519987,9.02060915597685,0,0,6.762422020448,0,0,3.60090323966999,1.41849132023278,7.19339883343468,0.285955987316295,0.542621605391443,0,2.60588947434988,0,0,14.1676507218005,0.871533458600294,8.29775826811074,0,0,0,46.9664716763502,138.982942359278,4.27910715122155,5.50168965336801,6.98619496671304,4.65558504423729,0,0,0,0,0,0,0,0,0,0,0,0,7.36148950314839,6.00204625271613,13.5632511849868,9.77463049194793,3.56857977594324,2.83864347061082,0.937131319941706,17.4548737842077,11.3703752027992,4.1389228517002,3.98535359121262,5.53107505625109,0,35.8316118156815,51.4715135716284,0,0,0,0.909382714338778,9.98612637062982,1.81434175997808,0,0.153461973288062,0,0.256278298511402,0.511707249066704,1.44768529029247,0,0.154209693802656,1.9531789784444,0.492762936082855,0,0.348631135379878,0.725156697549733,0,0.0920809889358963,2.41110341145674,0.546273504020151,4.58935452357984,0.902399225814824,0.308061348417659,5.49044838423799,0,0.105551628892876,0,0,7.1252252313706,1.54227252690289,16.7986791277189,14.5490034417907,0,0,0.895499018888713,0,0,0,0.328014645699706,0,0.206082023295445,0.27470839445503,0.082509499920588,0.574265537996172,0,0,8.12034033653824,10.4753059637958,5.52613229014066,2.20538515975249,2.14840489736547,3.77043404176994,3.83519823372454,6.94449878044551,2.14870389969272,1.53752053892085,1.40373983744043,1.51736671283325,0,0,0,0,0,0,1.29726953372744,0.572499546967965,7.07100901783368,5.37845022021834,4.5751246541718,0,0,2.22742273548156,0,0.539617372749944,0,0,0.202182481573316,0,0,0.48763373908959,4.6305563029944,0,0.9554993798559,0,4.52032466480971,0.551365343546124,0,1.31535265576129,0,1.31178950409327,0,0.30982349809975,0.281695602532241,0.143411352204052,0,0,0.709522128141196,22.5885169768501,9.54955189583715,0,0,4.13755084719702,10.0545341330368,4.3556393944529,0.564862804660675,6.02707521739722,3.36942951335251,3.54744122829341,3.21612760289743,0,0,0,0,0,0,0,0,0,0,12.7420912310136,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,2.45792611446766,2.68411329470899,2.0021897005429,0,0,0,0,0,0,0,1.17206543417515,0,0,0,0.23874448473769,0.593929361665277,2.45728561679386,0.994147647766298,0.140669416410513,0.779160935160341,0,1.05562704063997,4.38345574152353,0,6.04638594850262,0,0,0.933118762985422,0.0898683511473268,0,0,0.591860433821602,0,18.8932883245883,0,0.463840490809256,0,1.04171104434093,53.5255199976718,2.17499872630438,2.84483620713749,0,0.236387681767936,0,0,0,0,0.120596438625408,0,0.442317039724898,0.295547618953547,3.07139556015562,0.653630781113941,12.2692894965171,3.30886111566327,0,0,0,0.434589487688032,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0.424059214301822,1.08194319871046,0,0.176915129006678,0,0.296521128680622,0.123563938946503,0,0.134802265961354,4.81546588379273,0,0,0.19566461893209,0,0,0,0.91821828489147,43.5987399436567,0.300646838828985,1.03688191397247,0,0,0,0,0,0,0.347119476670262,0.587954384486266,11.1435784422915,0.34945333648406,0,17.9966776197698,15.348756588099,18.9686705792913,0.387956065953678,0,8.5872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| |||
|short_description=p1@SIX2 | |||
}} |
Revision as of 02:55, 21 January 2014
Short description: | p1@SIX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SIX2_5end |
Coexpression cluster: | C1906_Multipotent_small_normal_Fibroblast_smallcell_breast_Pericytes |
Association with transcript: | 0bp_to_ENST00000303077, NM_016932, uc002ruo.2, uc002rup.2_5end |
EntrezGene: | SIX2 |
HGNC: | 10888 |
UniProt: | Q9NPC8Q8TBA2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extracellular matrix secreting cell | 5.16e-09 | 15 |
stromal cell | 1.95e-07 | 28 |
GAG secreting cell | 4.11e-07 | 9 |
carbohydrate secreting cell | 4.11e-07 | 9 |
fibroblast of periodontium | 9.33e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 2.00e-13 | 74 |
mouth | 2.82e-09 | 29 |
stomodeum | 2.82e-09 | 29 |
endoderm-derived structure | 4.01e-09 | 160 |
endoderm | 4.01e-09 | 160 |
presumptive endoderm | 4.01e-09 | 160 |
respiratory tract | 2.74e-08 | 54 |
segment of respiratory tract | 3.93e-08 | 47 |
articulation | 7.51e-08 | 8 |
skeletal joint | 7.51e-08 | 8 |
articular system | 7.51e-08 | 8 |
subdivision of skeletal system | 9.54e-08 | 16 |
digestive system | 2.60e-07 | 145 |
digestive tract | 2.60e-07 | 145 |
primitive gut | 2.60e-07 | 145 |
saliva-secreting gland | 4.81e-07 | 6 |
gland of oral region | 4.81e-07 | 6 |
gland of foregut | 4.81e-07 | 6 |
oral gland | 4.81e-07 | 6 |
oral cavity | 4.81e-07 | 6 |
respiratory primordium | 5.70e-07 | 38 |
endoderm of foregut | 5.70e-07 | 38 |
periodontium | 9.33e-07 | 6 |
dentition | 9.33e-07 | 6 |