FFCP PHASE1:Hg19::chr2:54785085..54785127,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6711 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11275 | |||
|TSSclassifier=weak | |||
|UniProt=Q01082 | |||
|association_with_transcript=-403bp_to_ENST00000333896,NM_178313,uc002rxx.2_5end | |||
|description=CAGE_peak_6_at_SPTBN1_5end | |||
|id=chr2:54785085..54785127,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.13e-24!254;CL:0000542!7.94e-15!53;CL:0000051!7.94e-15!53;CL:0000838!1.60e-14!52;CL:0000223!8.15e-12!59;CL:0002076!9.86e-09!43;CL:0000084!2.23e-07!25;CL:0000827!2.23e-07!25;CL:0000791!2.44e-07!18;CL:0000789!2.44e-07!18;CL:0002420!2.44e-07!18;CL:0002419!2.44e-07!18;CL:0000790!2.44e-07!18;CL:0000945!3.76e-07!24;CL:0000826!3.76e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.20e-08;42!CL:0000542;2.92e-08;53!CL:0000084;5.97e-08;25!CL:0000945;1.67e-07;24!CL:0000791;1.98e-07;18!CL:0000789;1.98e-07;18!CL:0002419;1.98e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.80e-24,253;CL:0000542,2.89e-16,53;CL:0000051,2.89e-16,53;CL:0000838,6.26e-16,52;CL:0000223,1.21e-13,58;CL:0002076,4.42e-10,42;CL:0000084,4.90e-08,25;CL:0000827,4.90e-08,25;CL:0000945,9.66e-08,24;CL:0000826,9.66e-08,24;CL:0000791,1.76e-07,18;CL:0000789,1.76e-07,18;CL:0002420,1.76e-07,18;CL:0002419,1.76e-07,18;CL:0000790,1.76e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000051;2.92e-08;53!CL:0000223;1.88e-07;58!CL:0000790;1.98e-07;18 | |||
|ontology_enrichment_disease=DOID:305!1.15e-20!106;DOID:0050687!1.47e-15!143;DOID:162!3.24e-14!235;DOID:14566!6.90e-13!239;DOID:299!6.77e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:299;6.83e-07;25!DOID:305;7.35e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.44e-23,106;DOID:0050687,4.56e-18,143;DOID:162,2.65e-16,235;DOID:14566,7.57e-15,239;DOID:299,4.33e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!8.85e-14!169;UBERON:0000925!8.85e-14!169;UBERON:0006595!8.85e-14!169;UBERON:0000077!8.14e-13!130;UBERON:0004921!1.42e-12!129;UBERON:0004185!1.42e-12!129;UBERON:0001041!5.09e-12!98;UBERON:0001007!1.24e-11!155;UBERON:0001555!1.24e-11!155;UBERON:0007026!1.24e-11!155;UBERON:0000466!4.04e-10!126;UBERON:0005911!7.22e-10!82;UBERON:0005177!4.41e-08!107;UBERON:0001004!2.08e-07!72;UBERON:0005172!2.62e-07!55;UBERON:0005173!2.62e-07!55;UBERON:0000464!4.29e-07!104;UBERON:0000065!7.00e-07!53;UBERON:0002530!8.52e-07!59;UBERON:0003929!9.39e-07!54 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,2.05e-12,118;UBERON:0004119,3.25e-12,160;UBERON:0000925,3.25e-12,160;UBERON:0006595,3.25e-12,160;UBERON:0001041,3.79e-12,87;UBERON:0005177,1.04e-10,101;UBERON:0001007,3.42e-10,145;UBERON:0001555,3.42e-10,145;UBERON:0007026,3.42e-10,145;UBERON:0005911,8.24e-10,82;UBERON:0005172,8.50e-08,54;UBERON:0005173,8.50e-08,54;UBERON:0009569,1.95e-07,112;UBERON:0001004,2.89e-07,74;UBERON:0000065,5.11e-07,54;UBERON:0002417,9.14e-07,60;UBERON:0000916,9.14e-07,60 | |||
|phase1_expression=0.726713517082227,0.428201047781966,1.40954404095971,0,1.34088328328186,5.23403114460221,0,0,0,4.42321085702716,2.79120467188971,8.73765488520689,6.85794143393979,0.37129905888014,0.994192127183747,0,0,0,0,0.738726348460727,1.02000345622126,0,0.572471974262113,1.64249310087461,1.12988375635323,11.6148376736886,14.2855025642906,13.3808328233255,2.36018566109342,2.30297638858328,1.23852898652861,3.67768489791571,3.91567694411725,7.39508020333575,0.542270404062111,4.26507697462265,4.9912074686924,3.32397245119126,2.00544447470142,3.47217393145363,0,0.32389366601898,0,0,0.755751887377619,0.485168122375632,0,0,0,1.43846196161075,0.768482119587302,0.945928919554341,0.344745680736619,0,0,0.188242339542605,0.818718450173537,0.449446968890169,0,0.962787081228281,0,0.989553900560148,1.59570926097305,1.70489900213078,0,0.56738522469114,0,0.502497330513487,2.08593167368081,1.08594422352558,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,1.75996244461323,3.82297027883492,2.66852776159066,3.41384178053206,1.60158394814405,3.4485146397269,2.64417949113945,0,15.9379631350646,9.98303221930596,8.41001101875504,5.28685314316103,3.36305137788922,3.68737718685108,15.1466522987651,15.7204305099666,10.896879446974,3.8452893939856,5.54067853277104,5.20792586308207,5.84480185223734,1.55974639639243,1.47302953737419,2.87994062958707,2.70803863765016,3.33037431286755,1.95089021339817,4.93313713811028,2.76350017785848,7.53488022911136,10.2317728581822,10.9691739516782,18.8163942848958,4.41906436520508,1.91610246800961,4.12352934579156,6.32549230048757,4.45991580053735,5.85975108470777,0.950452044448374,5.57127940587759,5.75939750194883,7.49584359314075,4.2619905367923,4.10563998460523,12.7012248231581,9.09296665663925,11.2963035028583,0,2.01210257911091,0.511450247374121,0,0.50133791063589,0,0,0,1.13441780596881,1.77383517970051,2.89854792787316,5.04269440666194,0.728590576585084,2.22470665670658,0.324547393654683,0,0,6.20075623193889,3.43196946468077,2.60020250930695,0.79504962946682,0.860234595106124,0.694281003215189,0.56530794192401,0.419499436209906,1.37559020970034,1.46296476575767,0.516833518338658,0.71153252537342,0.66944122552934,0.402829317109147,0.760272105718513,0,1.10298924103761,0.81014194788176,0.714397826272638,0.44905874525234,1.0135033243499,1.53316637465883,0.949265659568129,1.09921046358244,2.63560834872127,0,4.36094052142534,0,1.01304409331664,0.264818361626438,2.58152958673932,2.12801029319014,1.68203280042692,10.6748995729705,4.9333509683432,0,0.808264032418128,1.30769522490767,0.302714855289863,0,1.40592859100278,0.312160076830321,0,0.149448680551801,0.352303495931295,0.647491777472526,0.842704840213491,0.816616685019573,0.61417158655884,0.413303124703062,0,0,0.910161361938026,0,0.505008341862199,0.375355559615893,0.277064115484183,0.438977620880838,0.30648779579902,0.300476117813194,1.47461838108027,1.4351170855109,0,0.423863802319124,0.300091096084402,0,0.772921620136887,0,0.506328996723799,0.194874010322397,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0.508681776931463,1.73934767846967,3.27295344709002,3.44165514466805,2.43947412259191,1.72288698817931,2.90484857173796,2.07322110030741,2.27088765788066,2.55484151353081,0,0.643240938192885,0,0,0,2.24782920075703,2.69735504124963,4.33819853790268,3.52940712743661,3.4860711054785,4.50814176311084,1.8876383142423,3.72820783738158,1.53898862778556,1.4763109092493,0,1.6462960453256,1.47008711385542,17.7457048750563,25.5535076336183,18.9052770138049,3.97316789473185,9.22413289073352,2.40194934417936,3.07300799144152,3.37205259772859,2.21163739305588,3.14800713539001,0.651616610620649,0,0,0.463721619900307,1.52631302506568,0.433099343283221,0.462985512576611,0.190254152234598,3.95102198979638,1.71697232418975,0,0,0,0.93733833986777,3.69560682037491,3.40260233381728,5.10483579406235,6.97521452433509,3.83382679165211,0,0.088048434013226,0,0.720599767084807,0.75745460055828,0.190493682876507,0,1.17217447210047,0,0.925447434329912,0.300343057843917,2.5724378936752,1.45770409648969,2.1798003441664,2.0534720029866,1.42198887333556,0,0,0.26593811658487,1.04007436911366,0.771622122786426,2.83698264046557,1.5985330740966,1.28680194292333,0,0,0.65147236858747,0.710783897485092,2.37585561880029,4.22015127883421,1.74306691720059,2.39935178836937,0,0,0,1.91699884393266,0,2.85273810081437,0.434343920002738,0.410952645100767,0.537182889719687,9.30306695146276,6.10795356625974,10.7813787429759,7.05886699538616,0.508189248444927,0,0,0.167516265334349,0,0,0,0.414415513436035,0.49076596687656,0.500170521059677,0.542530047399471,0.415941723061614,0.713715955188647,1.57702415033935,0.117141414992713,0.300946099727719,0,0,2.65690239414175,1.47495334833363,0,0.391602314925481,0,5.37596867919507,6.68714022537712,5.65656056358255,5.75942385747893,8.32177197552485,6.65258645325297,0.744323423456331,2.30192959932094,2.52594084989766,1.53766979106841,0,1.28683136914886,1.48418066444991,0.925258162815933,0,0.492762936082855,0.519254429183621,0.11621037845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| |||
|short_description=p6@SPTBN1 | |||
}} |
Revision as of 03:10, 21 January 2014
Short description: | p6@SPTBN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SPTBN1_5end |
Coexpression cluster: | NA |
Association with transcript: | -403bp_to_ENST00000333896, NM_178313, uc002rxx.2_5end |
EntrezGene: | SPTBN1 |
HGNC: | 11275 |
UniProt: | Q01082 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.80e-24 | 253 |
lymphocyte | 2.89e-16 | 53 |
common lymphoid progenitor | 2.89e-16 | 53 |
lymphoid lineage restricted progenitor cell | 6.26e-16 | 52 |
endodermal cell | 1.21e-13 | 58 |
endo-epithelial cell | 4.42e-10 | 42 |
T cell | 4.90e-08 | 25 |
pro-T cell | 4.90e-08 | 25 |
lymphocyte of B lineage | 9.66e-08 | 24 |
pro-B cell | 9.66e-08 | 24 |
mature alpha-beta T cell | 1.76e-07 | 18 |
alpha-beta T cell | 1.76e-07 | 18 |
immature T cell | 1.76e-07 | 18 |
mature T cell | 1.76e-07 | 18 |
immature alpha-beta T cell | 1.76e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.05e-12 | 118 |
endoderm-derived structure | 3.25e-12 | 160 |
endoderm | 3.25e-12 | 160 |
presumptive endoderm | 3.25e-12 | 160 |
foregut | 3.79e-12 | 87 |
trunk region element | 1.04e-10 | 101 |
digestive system | 3.42e-10 | 145 |
digestive tract | 3.42e-10 | 145 |
primitive gut | 3.42e-10 | 145 |
endo-epithelium | 8.24e-10 | 82 |
abdomen element | 8.50e-08 | 54 |
abdominal segment element | 8.50e-08 | 54 |
subdivision of trunk | 1.95e-07 | 112 |
respiratory system | 2.89e-07 | 74 |
respiratory tract | 5.11e-07 | 54 |
abdominal segment of trunk | 9.14e-07 | 60 |
abdomen | 9.14e-07 | 60 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.44e-23 | 106 |
cell type cancer | 4.56e-18 | 143 |
cancer | 2.65e-16 | 235 |
disease of cellular proliferation | 7.57e-15 | 239 |
adenocarcinoma | 4.33e-07 | 25 |