FFCP PHASE1:Hg19::chr7:127292240..127292260,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27044 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30646 | |||
|TSSclassifier=strong | |||
|UniProt=E7ESM6 | |||
|association_with_transcript=0bp_to_ENST00000438400,ENST00000463020_5end | |||
|description=CAGE_peak_1_at_SND1_5end | |||
|id=chr7:127292240..127292260,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.90e-13!180;CL:0002321!2.04e-11!248;CL:0000220!2.60e-11!246;CL:0000222!5.52e-10!119;CL:0000548!2.63e-08!679;CL:0000004!2.63e-08!679;CL:0000255!2.63e-08!679;CL:0000183!4.86e-08!59;CL:0000012!1.10e-07!682;CL:0000066!1.60e-07!254;CL:0000057!3.10e-07!75;CL:0000359!3.47e-07!32;CL:0000192!4.80e-07!42;CL:0000514!4.80e-07!42;CL:0000187!6.34e-07!54;CL:0000144!9.65e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0000359;9.27e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,5.94e-12,250;CL:0000222,1.41e-10,121;CL:0000057,1.45e-07,76;CL:0000192,2.14e-07,43;CL:0000514,2.14e-07,43;CL:0000066,2.63e-07,253;CL:0000187,3.00e-07,55;CL:0000359,3.47e-07,32;CL:0000680,7.48e-07,58;CL:0000056,7.48e-07,58;CL:0000355,7.48e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.91e-12!118;UBERON:0001637!2.69e-10!42;UBERON:0003509!2.69e-10!42;UBERON:0004572!2.69e-10!42;UBERON:0000055!7.51e-10!69;UBERON:0002100!1.86e-09!216;UBERON:0001981!1.98e-09!60;UBERON:0007500!1.98e-09!60;UBERON:0004537!1.98e-09!60;UBERON:0006965!1.98e-09!60;UBERON:0002049!8.56e-09!79;UBERON:0007798!8.56e-09!79;UBERON:0004872!1.20e-08!84;UBERON:0004573!1.26e-08!33;UBERON:0004571!1.26e-08!33;UBERON:0005256!1.56e-08!143;UBERON:0000490!3.04e-08!138;UBERON:0000486!8.11e-08!82;UBERON:0003104!1.79e-07!238;UBERON:0009142!1.79e-07!238;UBERON:0004290!2.33e-07!70;UBERON:0009569!7.99e-07!113;UBERON:0000914!8.19e-07!83;UBERON:0002329!8.19e-07!83;UBERON:0003077!8.19e-07!83;UBERON:0003059!8.19e-07!83;UBERON:0007282!8.19e-07!83;UBERON:0009618!8.19e-07!83;UBERON:0007285!8.19e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;7.99e-08;33!UBERON:0004571;7.99e-08;33!UBERON:0001637;1.15e-07;42!UBERON:0003509;1.15e-07;42!UBERON:0004572;1.15e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003914,6.24e-12,117;UBERON:0001637,2.69e-10,42;UBERON:0003509,2.69e-10,42;UBERON:0004572,2.69e-10,42;UBERON:0003104,8.05e-10,160;UBERON:0009142,8.05e-10,160;UBERON:0000490,1.08e-09,148;UBERON:0000055,1.81e-09,68;UBERON:0005256,2.99e-09,122;UBERON:0007503,3.84e-09,78;UBERON:0007500,4.86e-09,59;UBERON:0001981,4.86e-09,59;UBERON:0004537,4.86e-09,59;UBERON:0006965,4.86e-09,59;UBERON:0002100,6.35e-09,199;UBERON:0004573,1.26e-08,33;UBERON:0004571,1.26e-08,33;UBERON:0002049,1.91e-08,78;UBERON:0007798,1.91e-08,78;UBERON:0004872,2.62e-08,83;UBERON:0000486,4.04e-08,83;UBERON:0002329,1.15e-07,71;UBERON:0003059,1.15e-07,71;UBERON:0007282,1.15e-07,71;UBERON:0004290,1.15e-07,71;UBERON:0009618,1.15e-07,71;UBERON:0007524,1.87e-07,73;UBERON:0003077,2.74e-07,72;UBERON:0007285,2.74e-07,72 | |||
|phase1_expression=116.637519491697,103.410553039345,128.127553323238,125.091622941413,141.239705839023,156.148595813966,151.979926900986,155.403088863,197.717520547278,114.0205465367,192.59312236039,147.229484815736,143.753003134507,100.869577662438,194.198862176559,133.120378997451,134.400879749347,135.837676812051,135.15738526497,98.8662096356607,137.904467281115,145.756445487311,34.0620824685957,62.4147378332352,57.6240715740145,126.769840135851,119.292156470771,130.030210730198,55.4643630356955,31.8578400420687,50.934504570989,139.752026120797,262.350355255856,285.45009584876,160.744441204126,208.704433291535,66.0600988503406,38.2256831886995,126.142457458719,76.170815621264,125.392665574358,98.1397808037508,131.363539493435,68.0463757488363,83.5105835552269,62.3441037252688,85.3014565443863,101.147300453369,56.3665595029088,84.2938709503901,87.0946402198942,49.6612682766029,69.6386275087969,96.1772178539901,94.7985406160392,77.7440862310957,78.5969712166596,40.2255037156702,72.8479663842748,70.9253149838167,65.2123868315022,99.944943956575,73.0036986895173,84.8187253560061,75.1641928048033,93.0511768493469,71.6245586344911,98.4894767806434,106.382515357721,61.2472542068429,87.7829278818385,67.7630850217119,52.5327563151868,37.8146962498376,48.89898899196,36.4806043184574,52.0081562208272,61.5725260650176,52.3965412632481,19.9508920618874,32.0255850290535,29.9569212174,45.7590235599439,28.3992077856308,31.1328238852244,43.0997524792172,28.4281150795569,29.3123744376786,33.713288512028,22.8972901088487,67.7363433240244,72.2301742926255,77.9837385375467,50.2251048600298,48.7642449793936,65.5826371089942,43.2761494250433,68.3838727183547,51.8115777478763,38.6200804352466,13.6887351986108,16.0972253949809,21.4309401248702,74.8678270268367,22.3900489680876,23.4825928258638,21.6643091012012,82.8750838625118,70.3621070298941,116.422036459403,126.844658163704,66.364906633327,26.0984351165226,27.5567052932404,25.0885257131944,73.5377634107205,18.7778041864941,18.555882056062,29.6033039662818,17.8396632021494,20.183587069549,9.50452044448374,25.1460448859881,25.4693356197293,33.7312961691334,19.6525119196534,25.4549679045524,55.038640900352,81.0343793224027,55.7573954948776,709.477980973629,156.273300310947,105.998063768287,278.308147336116,232.119452624417,172.512204082341,63.6228757640879,149.396905182909,58.6115866417221,94.4567233190522,83.618715979856,53.8324000295599,165.025765596522,127.920632760628,65.558573518246,74.7016573013856,79.1099865087248,120.437765274198,98.9551195649621,100.293525358983,125.021554233657,190.111845518453,155.171804218595,155.459684029103,169.897271665012,133.157132298993,149.013411140746,75.9745271957827,83.9608379940636,103.428669344283,139.378943719765,164.979046940917,124.471649349566,147.432895218693,142.58498282719,78.2265619768539,124.164743062272,115.989824897822,137.984973719295,167.070756083991,110.287449846105,6.58902087180316,3.87780264148325,169.204492231303,235.067733151886,93.2000565851307,201.394364016906,283.107744679079,102.144494073127,167.081924842408,239.117750434539,117.907088143402,112.035972743916,132.690011988643,116.384875016783,233.695868283774,222.40390684928,116.692073053231,144.842275649269,146.040786315379,117.317214233164,131.409203982373,131.926449660027,126.967529258833,92.0735312359569,103.54932949382,117.998042102724,52.2721257204104,130.062404800521,210.247274607684,227.083332813931,76.0879235072379,120.989608716189,86.1669399155809,133.010219126894,110.335606487647,109.373306884002,55.0146088326102,362.54645372719,138.812302732069,154.286424044161,265.280528938612,133.659130422255,308.395726434618,143.682213087987,138.734145102321,113.611548017958,358.203525652398,158.786075157966,198.016419603045,277.617501347992,109.819787068128,101.566794793982,90.6393401335862,118.644562457013,84.0337464489781,129.414102203501,107.08405280376,107.827978982913,141.082695875919,113.292062043157,148.180807784787,206.513382675357,129.29142857677,129.846826071332,200.606944909815,221.617000872563,85.654123228847,91.8786560925654,90.3791362063058,82.8307735220279,83.665706531484,97.5182244546607,87.2358563796264,111.257570726071,108.883445415828,151.321868198053,214.569913919272,159.690716396583,246.97463512771,226.891512331077,209.342197152334,258.175189219774,67.1023911110269,96.5459242563441,87.3280154419495,134.773350481792,300.112681197844,112.894036018261,131.290415234795,127.716855681647,249.584348467099,119.795013880977,75.8184848537002,144.99973738124,103.366376596929,141.210581335866,102.927496358918,76.6498266020497,60.952517508736,85.9297351245017,60.3731004059233,85.9088118028849,107.793909084794,93.5660454067648,100.518543944852,94.6633584969106,98.5249051562331,110.030828920416,78.333454825455,52.6529635399092,43.3315761480214,36.3182282610743,45.9522457672023,94.2308751295788,185.646374821323,222.713149699089,130.015058977256,89.4599186518915,157.980448425901,118.903795974321,128.726484828474,143.430862646149,79.4253635440889,149.438103415991,1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| |||
|short_description=p1@SND1 | |||
}} |
Revision as of 19:08, 22 January 2014
Short description: | p1@SND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SND1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000438400, ENST00000463020_5end |
EntrezGene: | SND1 |
HGNC: | 30646 |
UniProt: | E7ESM6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 5.94e-12 | 250 |
mesodermal cell | 1.41e-10 | 121 |
fibroblast | 1.45e-07 | 76 |
smooth muscle cell | 2.14e-07 | 43 |
smooth muscle myoblast | 2.14e-07 | 43 |
epithelial cell | 2.63e-07 | 253 |
muscle cell | 3.00e-07 | 55 |
vascular associated smooth muscle cell | 3.47e-07 | 32 |
muscle precursor cell | 7.48e-07 | 58 |
myoblast | 7.48e-07 | 58 |
multi-potent skeletal muscle stem cell | 7.48e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
epithelial tube | 6.24e-12 | 117 |
artery | 2.69e-10 | 42 |
arterial blood vessel | 2.69e-10 | 42 |
arterial system | 2.69e-10 | 42 |
mesenchyme | 8.05e-10 | 160 |
entire embryonic mesenchyme | 8.05e-10 | 160 |
unilaminar epithelium | 1.08e-09 | 148 |
vessel | 1.81e-09 | 68 |
trunk mesenchyme | 2.99e-09 | 122 |
epithelial vesicle | 3.84e-09 | 78 |
epithelial tube open at both ends | 4.86e-09 | 59 |
blood vessel | 4.86e-09 | 59 |
blood vasculature | 4.86e-09 | 59 |
vascular cord | 4.86e-09 | 59 |
trunk | 6.35e-09 | 199 |
systemic artery | 1.26e-08 | 33 |
systemic arterial system | 1.26e-08 | 33 |
vasculature | 1.91e-08 | 78 |
vascular system | 1.91e-08 | 78 |
splanchnic layer of lateral plate mesoderm | 2.62e-08 | 83 |
multilaminar epithelium | 4.04e-08 | 83 |
somite | 1.15e-07 | 71 |
presomitic mesoderm | 1.15e-07 | 71 |
presumptive segmental plate | 1.15e-07 | 71 |
dermomyotome | 1.15e-07 | 71 |
trunk paraxial mesoderm | 1.15e-07 | 71 |
dense mesenchyme tissue | 1.87e-07 | 73 |
paraxial mesoderm | 2.74e-07 | 72 |
presumptive paraxial mesoderm | 2.74e-07 | 72 |