FFCP PHASE1:Mm9::chr3:28664288..28664311,-: Difference between revisions
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{{FFCP|EntrezGene=100505213|HGNC=|UniProt=G3UW66|association_with_transcript=2bp_to_ENSMUST00000094335_5end|description=CAGE_peak_1_at_LOC100505213_5end|id=chr3:28664288..28664311,-|ontology_enrichment_celltype=CL:0000055!3.08e-30!50;CL:0000393!4.91e-30!39;CL:0000211!4.91e-30!39;CL:0002319!4.49e-29!43;CL:0000540!1.66e-28!33;CL:0000047!1.66e-28!33;CL:0000031!1.66e-28!33;CL:0000404!1.66e-28!33;CL:0000221!3.01e-28!44;CL:0000133!3.01e-28!44;CL:0002321!8.12e-23!70;CL:0000220!8.12e-23!70;CL:0000107!1.74e-17!9;CL:0000117!6.03e-15!23;CL:0000337!6.03e-15!23;CL:0000723!4.01e-13!91;CL:0000048!4.01e-13!91;CL:0000034!8.47e-13!97;CL:0002609!9.45e-13!6;CL:0000548!1.65e-12!115;CL:0000004!1.65e-12!115;CL:0000255!1.65e-12!115;CL:0002371!5.61e-12!118;CL:0000144!1.80e-11!121;CL:0000012!1.80e-11!121;CL:0002608!3.56e-07!3;CL:0002613!5.15e-07!3;CL:0000120!6.77e-07!3|ontology_enrichment_celltype_v019_2=CL:0000540,9.00e-46,33;CL:0000047,9.00e-46,33;CL:0000031,9.00e-46,33;CL:0000404,9.00e-46,33;CL:0000393,9.71e-42,39;CL:0000211,9.71e-42,39;CL:0002319,7.99e-41,43;CL:0000221,8.61e-40,44;CL:0000133,8.61e-40,44;CL:0002321,2.51e-30,70;CL:0000107,1.96e-26,9;CL:0000117,5.20e-24,23;CL:0000337,5.20e-24,23;CL:0002609,5.03e-19,6;CL:0000723,1.36e-18,91;CL:0000048,1.36e-18,91;CL:0000034,3.86e-17,97;CL:0002608,2.49e-10,3;CL:0002613,4.42e-10,3;CL:0000120,6.75e-10,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002410!1.74e-17!9;UBERON:0000010!1.87e-17!11;UBERON:0000073!9.44e-15!75;UBERON:0001016!9.44e-15!75;UBERON:0001017!6.41e-14!73;UBERON:0005743!6.41e-14!73;UBERON:0004121!1.38e-11!102;UBERON:0000924!1.38e-11!102;UBERON:0006601!1.38e-11!102;UBERON:0000011!4.49e-07!3;UBERON:0000013!5.15e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000010,1.19e-26,11;UBERON:0002410,1.96e-26,9;UBERON:0001016,2.08e-21,75;UBERON:0001017,4.99e-20,73;UBERON:0004121,6.78e-16,95;UBERON:0000924,6.78e-16,95;UBERON:0006601,6.78e-16,95;UBERON:0000011,3.56e-10,3;UBERON:0000013,4.42e-10,3;UBERON:0010313,2.19e-09,3;UBERON:0002342,2.19e-09,3;UBERON:0002005,2.19e-09,3;UBERON:0005428,2.19e-09,3;UBERON:0005062,2.19e-09,3;UBERON:0002020,3.48e-09,34;UBERON:0002346,8.15e-08,64;UBERON:0003075,8.15e-08,64;UBERON:0007284,8.15e-08,64;UBERON:0003528,1.75e-07,29;UBERON:0002791,1.75e-07,29;UBERON:0001893,1.75e-07,29;UBERON:0011216,7.92e-07,194|phase1_expression=0,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,1.96222640742402,0,0,0.55994568650145,0,0,0,0,0,0.85960031981627,4.64104883049698,8.29497489524351,2.11596391708813,4.43681982454325,0,0,0,0,0,0.299600110518405,0,7.56934169851887,2.43010688997043,8.41299845405528,0,1.98781686856452,10.9016811301309,6.42164655822184,2.75765635983006,0,0,0,4.61602007055678,2.19570344645783,11.9810075228055,0,0,0,0,0,4.10078780815661,0,6.87701196971748,0,0,9.51959867190851,2.69851595818909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9180800292775,0,2.2085575359138,1.95219372148319,6.03185513651837,4.30143836314594,6.68396022247182,6.22768367735431,2.83367491172426,5.84511715822624,6.7198922250909,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p1@LOC100505213}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:100505213 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:G3UW66 | |||
|association_with_transcript=2bp_to_ENSMUST00000094335_5end | |||
|cluster_id=chr3:28664288..28664311,- | |||
|description=CAGE_peak_1_at_LOC100505213_5end | |||
|id=chr3:28664288..28664311,- | |||
|ontology_enrichment_celltype=CL:0000055!3.08e-30!50;CL:0000393!4.91e-30!39;CL:0000211!4.91e-30!39;CL:0002319!4.49e-29!43;CL:0000540!1.66e-28!33;CL:0000047!1.66e-28!33;CL:0000031!1.66e-28!33;CL:0000404!1.66e-28!33;CL:0000221!3.01e-28!44;CL:0000133!3.01e-28!44;CL:0002321!8.12e-23!70;CL:0000220!8.12e-23!70;CL:0000107!1.74e-17!9;CL:0000117!6.03e-15!23;CL:0000337!6.03e-15!23;CL:0000723!4.01e-13!91;CL:0000048!4.01e-13!91;CL:0000034!8.47e-13!97;CL:0002609!9.45e-13!6;CL:0000548!1.65e-12!115;CL:0000004!1.65e-12!115;CL:0000255!1.65e-12!115;CL:0002371!5.61e-12!118;CL:0000144!1.80e-11!121;CL:0000012!1.80e-11!121;CL:0002608!3.56e-07!3;CL:0002613!5.15e-07!3;CL:0000120!6.77e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,9.00e-46,33;CL:0000047,9.00e-46,33;CL:0000031,9.00e-46,33;CL:0000404,9.00e-46,33;CL:0000393,9.71e-42,39;CL:0000211,9.71e-42,39;CL:0002319,7.99e-41,43;CL:0000221,8.61e-40,44;CL:0000133,8.61e-40,44;CL:0002321,2.51e-30,70;CL:0000107,1.96e-26,9;CL:0000117,5.20e-24,23;CL:0000337,5.20e-24,23;CL:0002609,5.03e-19,6;CL:0000723,1.36e-18,91;CL:0000048,1.36e-18,91;CL:0000034,3.86e-17,97;CL:0002608,2.49e-10,3;CL:0002613,4.42e-10,3;CL:0000120,6.75e-10,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002410!1.74e-17!9;UBERON:0000010!1.87e-17!11;UBERON:0000073!9.44e-15!75;UBERON:0001016!9.44e-15!75;UBERON:0001017!6.41e-14!73;UBERON:0005743!6.41e-14!73;UBERON:0004121!1.38e-11!102;UBERON:0000924!1.38e-11!102;UBERON:0006601!1.38e-11!102;UBERON:0000011!4.49e-07!3;UBERON:0000013!5.15e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000010,1.19e-26,11;UBERON:0002410,1.96e-26,9;UBERON:0001016,2.08e-21,75;UBERON:0001017,4.99e-20,73;UBERON:0004121,6.78e-16,95;UBERON:0000924,6.78e-16,95;UBERON:0006601,6.78e-16,95;UBERON:0000011,3.56e-10,3;UBERON:0000013,4.42e-10,3;UBERON:0010313,2.19e-09,3;UBERON:0002342,2.19e-09,3;UBERON:0002005,2.19e-09,3;UBERON:0005428,2.19e-09,3;UBERON:0005062,2.19e-09,3;UBERON:0002020,3.48e-09,34;UBERON:0002346,8.15e-08,64;UBERON:0003075,8.15e-08,64;UBERON:0007284,8.15e-08,64;UBERON:0003528,1.75e-07,29;UBERON:0002791,1.75e-07,29;UBERON:0001893,1.75e-07,29;UBERON:0011216,7.92e-07,194 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,1.96222640742402,0,0,0.55994568650145,0,0,0,0,0,0.85960031981627,4.64104883049698,8.29497489524351,2.11596391708813,4.43681982454325,0,0,0,0,0,0.299600110518405,0,7.56934169851887,2.43010688997043,8.41299845405528,0,1.98781686856452,10.9016811301309,6.42164655822184,2.75765635983006,0,0,0,4.61602007055678,2.19570344645783,11.9810075228055,0,0,0,0,0,4.10078780815661,0,6.87701196971748,0,0,9.51959867190851,2.69851595818909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.9180800292775,0,2.2085575359138,1.95219372148319,6.03185513651837,4.30143836314594,6.68396022247182,6.22768367735431,2.83367491172426,5.84511715822624,6.7198922250909,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104859344425711,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0897138566094757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342869252385415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@LOC100505213 | |||
}} | |||
Revision as of 08:37, 6 August 2015
| Short description: | p1@LOC100505213 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_LOC100505213_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 2bp_to_ENSMUST00000094335_5end |
| EntrezGene: | 100505213 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 9.00e-46 | 33 |
| neuronal stem cell | 9.00e-46 | 33 |
| neuroblast | 9.00e-46 | 33 |
| electrically signaling cell | 9.00e-46 | 33 |
| electrically responsive cell | 9.71e-42 | 39 |
| electrically active cell | 9.71e-42 | 39 |
| neural cell | 7.99e-41 | 43 |
| ectodermal cell | 8.61e-40 | 44 |
| neurectodermal cell | 8.61e-40 | 44 |
| embryonic cell | 2.51e-30 | 70 |
| autonomic neuron | 1.96e-26 | 9 |
| CNS neuron (sensu Vertebrata) | 5.20e-24 | 23 |
| neuroblast (sensu Vertebrata) | 5.20e-24 | 23 |
| neuron of cerebral cortex | 5.03e-19 | 6 |
| somatic stem cell | 1.36e-18 | 91 |
| multi fate stem cell | 1.36e-18 | 91 |
| stem cell | 3.86e-17 | 97 |
| hippocampal neuron | 2.49e-10 | 3 |
| striatum neuron | 4.42e-10 | 3 |
| granule cell | 6.75e-10 | 3 |
| Ontology term | p-value | n |
|---|---|---|
| peripheral nervous system | 1.19e-26 | 11 |
| autonomic nervous system | 1.96e-26 | 9 |
| nervous system | 2.08e-21 | 75 |
| central nervous system | 4.99e-20 | 73 |
| ectoderm-derived structure | 6.78e-16 | 95 |
| ectoderm | 6.78e-16 | 95 |
| presumptive ectoderm | 6.78e-16 | 95 |
| parasympathetic nervous system | 3.56e-10 | 3 |
| sympathetic nervous system | 4.42e-10 | 3 |
| neural crest-derived structure | 2.19e-09 | 3 |
| neural crest | 2.19e-09 | 3 |
| enteric nervous system | 2.19e-09 | 3 |
| vagal neural crest | 2.19e-09 | 3 |
| neural fold | 2.19e-09 | 3 |
| gray matter | 3.48e-09 | 34 |
| neurectoderm | 8.15e-08 | 64 |
| neural plate | 8.15e-08 | 64 |
| presumptive neural plate | 8.15e-08 | 64 |
| brain grey matter | 1.75e-07 | 29 |
| regional part of telencephalon | 1.75e-07 | 29 |
| telencephalon | 1.75e-07 | 29 |
| organ system subdivision | 7.92e-07 | 194 |